Array 1 8764-9663 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVLZ010000025.1 Francisella tularensis subsp. novicida FSC159 FSC159_24_len56863, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 8764 36 73.0 34 T...T...AA..AG.C.....AA.......-...... AATTATCAAAGCAAATGAAAAAGATTAGCTGTAA A [8771] 8835 37 83.8 169 ..........T.AG...........T...TG...... TTTAAAGTAGCTAGAAAATTCAATTTTAGACCTACTTATTTTTATTATTTGAATGCTTTGGTAGTATGTTGAGATCAACATTTTGCTGTAAAACTGTTTTCGTGATTATATTATTTGATACAATGTCTCCAGCTAGAAACTTTTAGGAATAATTTACAAAATTAATTAA TG [8860] 9043 37 100.0 37 ..................................... TTCCTAGATCGATTGTTATTGATTATATGAAGCGTAC 9117 37 97.3 35 ............A........................ CTTTATTTCTTGATGTTATACAGTCTACAACCGAA 9189 37 97.3 36 .....C............................... ACAAGATTAGAAACTTTAGGTGTTAATAAAGTTACC 9262 37 100.0 36 ..................................... TGCCGTAACTTCTCCGGTGTCTCTATTTGTGTAAGC 9335 37 100.0 36 ..................................... CGCCTTTAATAGTCTCTGCAACGGTTTTAACTATAA 9408 37 100.0 36 ..................................... TGCCGTAACTTCTCCGGTGTCTCTATTTGTGTAAGC 9481 37 100.0 37 ..................................... CTCCAGACCCTGCTGGTAGAGCTAGAAAAACAAGTGC 9555 37 100.0 35 ..................................... GATGGAAATAATCTATATGTAAGAGTAAATAAGGC 9627 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 11 37 95.6 49 GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Left flank : AACGACAATGAACACATTTGAGATTACAACGTCTAGTTGTTTCCCATGCCATCCATTTAAGTTGATGTTTCACTAAATTCTTAATCCAAAACGAAATATAATTTTGCTATAACTATTATAACAAATAATCATTAAACTAACTGTATAAAGCTAATAAAAATAACTTTAAAAAAGCTATTTTAAAGACTCTTTTAGCTTGGTTAGTTTGAGATTTTTATTTATACTTTATAAATACTGATAATCTCAATATTAGTTATGATTACACTTTTGTTGTTAGCTATCGCGTTTATAGCAACCCTATATGCTTTATACTACTTTATTTTAGCTATTTTTAAGCTAATTGTAGCGATATATCATTTTAACTATTTTTTTTCTAAAACTGATTCAAAAAATTAATTAATTCATAAAATAAATTGCTTAAAGTCTATCAAAACTTTGTTTGTCTATTTCTGAAAGTAGTATTTAGATAAAAGCTTATGAAAAATTATTTTTAAATGAGT # Right flank : GAGCCAAAACAAACCTAGTGTTTGCAAGGCTTTGAGAGTTTTTTAAAATGGTATTTTTTCGCAAATACCCTAATTGTAAAAAAACGTAGACATTTTGCGAAAAAATATCTAAAATTATTAATGTACCAAATAATTAATGCTCTGTAATCATTTAAAAGTATTTTGAACGGACCTCTGTTTGACACGTCTGAATAACTAAAAAGCAAAAATTTGCCACTCAAGTGGCTTTTTTGTTTGTCAATTAATATATCTTGTTCACTTCTTAGCTCGATTACATCAAGATGGCTGAGAAATTTAATATGGAGATTTCTAAATATTTGCGAGATTTCTGCCTTCAGTGACAATTAGAGATTTTACTATCAACGATCATTACAAAAGTTGTAATATTCACATTGTATACATTGATGATCCGTTGCAGATGAGTCTGGCTTATTACCACTATCTAAAGTACTAAGAATATCGCTGATAGTTTTTATAAGTTTGTTGATTAACTCATCAGT # Questionable array : NO Score: 4.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-1.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: F [matched GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //