Array 1 136267-136965 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVQM01000060.1 Klebsiella pneumoniae strain 194_KPNE 752_160396_2165468_393+,...,157+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 136267 28 100.0 33 ............................ TGAAAAACCTTCACAAATCCTGGCCCCGACAGG 136328 28 100.0 33 ............................ TCCGGCACCACACTGGTGAGCCTGCTGGATTCT 136389 28 100.0 33 ............................ CCATTTCATAGTTAATCCTGGTCTGACAGGACT 136450 28 100.0 33 ............................ TACGCGCCGCTGTCACCATTTCCGCTGCTCCCC 136511 28 100.0 33 ............................ TAATCCGCAGCTCCGCGGGTACCAGGTCGACAG 136572 28 100.0 33 ............................ TCAGCTGGGCGTTCGTCAGCAAACTGGCAGCAA 136633 28 100.0 33 ............................ TATCATCTCATCAGAGAGCTTCATCGGCGACGA 136694 28 100.0 33 ............................ TATGGCTGCCGACTGACGGCGACGCCGAGAACT 136755 28 100.0 33 ............................ TATGTTCCAGGCGTTCTATGCCCCTGCTGATGC 136816 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 136877 28 96.4 33 ..............T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 136938 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.1 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGAGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGATATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGAATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACGTTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 145719-146478 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVQM01000060.1 Klebsiella pneumoniae strain 194_KPNE 752_160396_2165468_393+,...,157+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 145719 28 100.0 33 ............................ CCGTGCTATCTTTCACGAAGTCCATCGCTTCCT 145780 28 100.0 33 ............................ TGTCCTTGATGCCTACGTATATGATAATGCTGA 145841 28 100.0 33 ............................ TCAAAATTTCCGCATCGATCCTGACCCCGGCCA 145902 28 100.0 33 ............................ TCCCCTGGCCGAGAAGGGGGGGTATAAGCGCCA 145963 28 100.0 33 ............................ CTTTCAAAGATGGAAGCGATCAGTTATCCCTGG 146024 28 100.0 33 ............................ CGTGGGATGACAAGGCCCGCGCCTGGACAGTCA 146085 28 100.0 33 ............................ TTATGAGTATTCCAGCTTCACAACTTGCAGGGG 146146 28 100.0 33 ............................ CAGGTTTCCGCCCAGGTGCGCAGCGCGTATCGC 146207 28 100.0 33 ............................ TTAAGTGGATACTCTGCAAGCTGAATAACCAGC 146268 28 100.0 33 ............................ TTATTGGCGTGGGATGGTCTTTCGAACGATCCC 146329 28 100.0 33 ............................ CCAGCAAGGGGAAATTTGATGGGGCAGTTGATT 146390 28 100.0 33 ............................ CCCGATTGATCGAGCGATCGGTTTGTTCAAGCG 146451 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGACAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //