Array 1 792835-793119 **** Predicted by CRISPRDetect 2.4 *** >NZ_QCWL01000001.1 Geobacillus sp. LYN3 PseudoContig, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================== ================== 792835 30 100.0 38 .............................. ATGAAGAAGGGCGAAAATTATTCGTCAGTGAACTTGAG 792903 30 93.3 38 .................A...........T CGCGGTATACAACGCCAAAATCTTTCTCATTCATCCCT 792971 29 90.0 90 ...................-...A.....A CCAAGCTAAAAGAGGTTCTATTATTGTTTTTATCGTAATTATGAAATTGAACCAGCGTTCCAACGTGATATAATGAATTGGTAACTATTT 793090 30 70.0 0 A........GC.....C...T.....CGTA | ========== ====== ====== ====== ============================== ========================================================================================== ================== 4 30 88.3 56 GTTTTTATCTTACCTATGAGGAATTGAAAC # Left flank : CATCATCGCATTTTCGAACGGATACACTATCCCCCACTTTTCTGAGTCATCTTATTATCAACTTCCGCCGCTCATTCGCGATGATGATCCATTGATGAATGAGCTGTTTCAAGCAGCCATCGAGTCAACGGAGGAAGCCATCTTAAATTCGTTGACAATGGCAGAGACGACAACCGGACGGAACGGGCGAATTGGCGAGGCTATTCCGTATGACCTTTTTCAATGACAACAAAGGGTATGTCTAGATGAATCGGCAACATCGGCATGTTGGCCGGTGAACAAATCGAAATTAGTCTTTATTAGTTTAGTTAATCACCACGTCTGTTTTTGTTGCCGTCGACCTCCAATCATGCAAAAAGTGCGGGGGATCGACGACACTTTATTTTTCGCCCTCCTGCTTACAGGCATCAAGGATCAACTCTATTGACGCAATTTTATAAATGTTTTATACTGGACTTAACCTATTTTGAAAAATGTTGATTTATCAATGATTTTTTGGG # Right flank : AGTGTTCCGGCAGCTTTCCCTGCACCATGTCAATGTCACATTCTGACCTATATGCGCATTCTCGTTTCTCTCTAGCATAATTCTAGTGGAGAAACGAGTTTTTTTATTGCACTTTTATTGTGTGCATGTTCTAATAGTGATTGATGGGAATTAGGAATAGATTGATTTCATTGGCAGAGGATATATTCGAAGCAAGGAGTGGGGGCTGATGGAGAAAGAGGCGATCATCCGCTTTGAGCGGGTGACGAAGGAATACGATGGGTTAGTCGTGCTCGATGATGTCAGTTTTGAGATTGAGCGCGGGAAGTTTTATACCTTGCTCGGGCCGTCGGGATGCGGGAAGACGACGATTCTGCGTTTGATCGCGGGGTTTACGGAGCCGACGAAAGGAACGATTTATTTTCACGGAAAGCCGGTAAATCATGTACCTGCGAATAAGCGGCAAGTGAATACGGTGTTTCAGGATTATGCTTTGTTTCCGCATTTGAACGTGTTTGAAA # Questionable array : NO Score: 4.36 # Score Detail : 1:0, 2:3, 3:3, 4:0.41, 5:-1.5, 6:0.25, 7:-2.09, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 2177379-2174387 **** Predicted by CRISPRDetect 2.4 *** >NZ_QCWL01000001.1 Geobacillus sp. LYN3 PseudoContig, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 2177378 29 100.0 36 ............................. GATTTTATGAAAGGAGGTAAGGCAATGGGTATCCTC 2177313 29 100.0 36 ............................. CTACATACTGCATTTGCTCCAAGAAGGGAAAGTGTC 2177248 29 100.0 34 ............................. TTCTTATCCGTCAATTCCCCAATTGCGTTTAATT 2177185 29 100.0 35 ............................. ATGGTATACCGATAATCGTAATAGCGCTGATAACT 2177121 29 100.0 35 ............................. ACAAGTGTCCATTTTTTCTTGTCAGCGAAAGGAAC 2177057 29 100.0 34 ............................. CCGTTACCCCTTCGATTAAGTCGGCATATGGCTT 2176994 29 100.0 38 ............................. TTGTTGGTAAAAAACTTACTGACAAAGGATTTTAATAT 2176927 29 100.0 38 ............................. CACGGCACTATACATCACCTTTCCGTCATCAAATTCAA 2176860 29 100.0 37 ............................. GCGGCAACGGTCTTTTGCACAATTTGAACGAATTGTT 2176794 29 100.0 35 ............................. ATTTCTTGGTCATCTCCGCCTAACACAAACGCTTG 2176730 29 100.0 36 ............................. TTGATTGACACAGGCCGCTTGGTAGGTGCTATCCGC 2176665 29 100.0 36 ............................. AGTGTAGCTTCCAATCGGCAGCGGCGCTAACTGTGC 2176600 29 100.0 37 ............................. ACGTGATCGAATTCAGCCGTAAGGACGACGAGAAAAA 2176534 29 100.0 36 ............................. TAGCATCCGTCATTGCATTAGCAGGCGATAGAGTGA 2176469 29 100.0 35 ............................. AAGAAGAATAGCCACAAAACTGCGCCGTAAGTCAC 2176405 29 100.0 40 ............................. TTGCGACAAGCATAGGAATCGTAAATAAACTGTTTATCGA 2176336 29 100.0 36 ............................. TCGGCATGGAGTTTGCTGGACTGATTCAGAAGAAAA 2176271 29 100.0 37 ............................. TCTCTTCATCGCTGATATACGGCACTTGAACAATCTT 2176205 29 100.0 35 ............................. ATTCATATGCCAACACCGAGGTAACAGGGAACACC 2176141 29 100.0 35 ............................. ACAACGGTTATGACGGAGAATTAGAGTTGGCCAAC 2176077 29 100.0 36 ............................. ACGCATCATTTAACACTGATTCTTTCGTCTTCACCT 2176012 29 100.0 35 ............................. CCTTTTTTGTTTTAAAACGGCAACGCACTTCCGAA 2175948 29 100.0 37 ............................. AATGTTATCTTTGCTATGTTCTTCGCACCGACTATAA 2175882 29 100.0 39 ............................. ACGATGCCACAATTGTGTGCCTGGCGCCATATATTCCAC 2175814 29 100.0 35 ............................. TTTGTATACGTTGTCACACCGAATGATCGCTGCAT 2175750 29 100.0 37 ............................. CCATTCACAAAGGCTTCACTGTACTACCTTCCAACCT 2175684 29 100.0 38 ............................. TGAATATAAATTCTTCGAATCAACTTCTGTACAATTGC 2175617 29 100.0 39 ............................. ATCAGAAAATGAAAGACTTCGACGAGAGAAAACACTTTC 2175549 29 100.0 34 ............................. GTCTTTCGGTTTCTCTTTGCATACTCGGTAATCC 2175486 29 100.0 39 ............................. TGTCTCCGACTGCATAGAATTCAATATCCGAAATGACAC 2175418 29 100.0 34 ............................. ACGTGTTGAAGGATCCTTTTCTACCCACGAACGA 2175355 29 100.0 36 ............................. GACTGTGAAACCCATTTCTTTTAGTCGTTTCTGCAC 2175290 29 100.0 35 ............................. TTCGATGGTGAAGTAATTGAGATTAGTGACGAAGA 2175226 29 100.0 39 ............................. TGTCTCCGACTGCATAGAATTCAATATCCGAAATGACAC 2175158 29 100.0 35 ............................. CGAGAAGGCATTAGAGGAGTTTTGTGATGGGTTGC 2175094 29 100.0 37 ............................. TATGGATATGCCTAAACTCTTTAAAATCGGCGTTTTC 2175028 29 100.0 35 ............................. TGCGCTGATGGTGGAGCTTGGGGAGTTGGCTAATT 2174964 29 100.0 38 ............................. CATTTAATAAAGGTTGGAGAAAATTCATGGTTGGCCAA 2174897 29 100.0 38 ............................. CTACCTCGGACTCATCAACCCAATCAGCAGCAAATCGC 2174830 29 100.0 37 ............................. TCGTTTATTTCTGTCACGATATAGCGGCGGTTTTTAT 2174764 29 100.0 34 ............................. AGGACATCAACAGTAGAGTACTTATTTGTAATAC 2174701 29 100.0 35 ............................. TAGTTGTTATTGCCTCGAGGCATAAATCCGTTTTT 2174637 29 100.0 34 ............................. CTGGAGAAAATATTGCAAAAGGCCAACGGACTCC 2174574 29 100.0 28 ............................. CATATACGAGAAAGAACAAGCCAAACAG Deletion [2174518] 2174517 29 82.8 73 .......T................GGG.T ATAAAGATAAAATAGACATTTGTGGTGTATTTTTTATTCGCTTTATTTGAACATAGTTTTTTGTCTTTTTAGA 2174415 28 82.8 0 ..A....T.........-....A.....A | G [2174391] ========== ====== ====== ====== ============================= ========================================================================= ================== 46 29 99.3 37 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : CGATCTATTTTTTGGATGAAAACGAGACAAAAAGATCTCTTCCGGTTCATCAAGTGGATAACTTAAGTGTGTAAGAAGTTAAAGGAATATTTAACGTGGACACAGAATAGTGTGTTTGAAGGCGAGATTTCGAAAAGCTTATTAATGAAATGTATGTATGAGCTAGAATTAATCATAAATAAAGAAGAAGATTCGATTTATCTTTATCAAGTGCCTAACCCCAAAAATATAAAGAAGCAGGTTTTTGGACAGGAACGGAATTTTGATGAACTATTCATTTAATAGCAAAGCCTGAAAGTGTAGAGTAGCTCTCAGGATGCAGTAAACCTCCGTTTTGATCTAATACTGGAAAATGCTTGATATATCAACAGAAATCACTTATTTTTTTACTAGATCAAAAACACAACTGCCGCTTTACTGCAAAACCTAATGTACTGGTGTGATCAATGTTTGAAGAAAAACATTGATACATCAATATTTTGTCGTTGTTTGAAAATAGG # Right flank : ATGAAATACATGCCATAACACGAATTGGTCATTTGTGATTTATCCAACATGAAGTAGAGCTTTACTATTATTCAAAATAGAAAAAATATGTTATATGAAAGGATGAAAGACAAGCATTAATGATATAATTGGCAGAAGATGTATCATCTGTTTTTCACTAGTTATCTTACAAGACAGAAAGAATGAGTGGGGGTCAACATGAGAATACGCGACTGGGATTGGAATTTAAAGGTGCGCTTATTTGGCGAGGCGCTCGTCCATATCGCATTTTGGATGTTTTTTCCGTTTATGGCGATATATTTTACTGAGTCATTTGGAAAGGATAAAGCAGGACTATTATTGATTGTTTCGCAAATTTTTTCCGTGATCGCTAGTTTGATGGGCGGATATTGCGCGGATGTATTCGGACGCAAGCGGATGATGGTGTTGTCTGCCTATGGTCAAGGGGCAGCGTTTTTCTTTTTTGCGCTTGCTAGTTCTCCGTGGTTTACTTCGCCGTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //