Array 1 116-1676 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCER010000032.1 Flavobacterium psychrophilum strain 1350-M11 contig00032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 116 46 69.6 29 TAAT.T....A.ACC...CGGGT....................... TTTTGTTTTCGTCAAATTCCCCATTTGTG 191 46 100.0 30 .............................................. ATTAATGCGCTAATTATCGAAGGTAGCACT 267 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 343 46 100.0 30 .............................................. ATTTAATGTAATTGTACCCGAACCAGCTCC 419 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 495 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 570 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 646 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 722 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 798 46 100.0 30 .............................................. AAAAGATTTAGCAACATAGATGATTGTTTT 874 46 100.0 29 .............................................. TTTTACTTTTTATTTAAAGCAACTGTAAT 949 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 1025 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 1101 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 1176 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 1252 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 1327 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 1403 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAATATTTAGC 1479 46 100.0 30 .............................................. AAGCGTTTTTTACTTCGTCGCTTTTCTCTT 1555 46 100.0 30 .............................................. TGTTTGGGCTACGTTAAAACAAGTCGGGTC 1631 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 21 46 98.4 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : CAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCAAAT # Right flank : CATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 677-218 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCER010000048.1 Flavobacterium psychrophilum strain 1350-M11 contig00048, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 676 42 97.6 27 G......................................... ATTGAAAAAAGCATTCTCTCGAATAGT 607 42 100.0 27 .......................................... ACCGGAAAAAGCACCTCGATTAATAGT 538 42 97.6 27 .A........................................ ACTGAAAAAAGCACTATTTTCAATATC 469 42 100.0 27 .......................................... GCGTGCAAAAGACCCATCTCCAATAGA 400 42 95.2 27 .......................T....A............. GCCTGCAAAAGACCCTTTTCCGATAGT 331 42 97.6 27 ................................G......... TCTTTCAAAAGCAGCATCTCCGATAGA 262 42 81.0 0 T..A..G.T......G.......T..........TT...... | TTG [248] ========== ====== ====== ====== ========================================== =========================== ================== 7 42 95.6 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : GGTTAGCCGTTTGAAGCTAACCTTTTATTGTATAAAATATTTTTTTAAAATTACTGAACAATAATTGTTTTTGTTGCCTTACCTTGATTTGTCATTACTTCTACAAAGTAATTGCCTTTTGCAAAGCTTGAAACATTTATTTCTAAATGATTAGTTGTTTTTATTAACTGCCCTAATGTGTTGTAAAAATTTACTTTTTCTAATTGTAATCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAGCTGGGTTTGGGTATATTTTTAAAGCACTTTCTATTGCAAATGAATGATTAGAAAGTAAACCACCAGAAATAGGGCTGAAATTTCTCCAAACCGCGGCTGCCTGATAAACGGCTTGAGTACCAGTAGGAACATTTAAAGCACAGTTTGACTGAGTAACATTACCGAAGACATCTGCATTAATAGCTAAAGGCATTGTAATGTAACATTTTACTGTGGTTAAACGTTTACAATTATAAAAAGCAGCATTTTCAATAGT # Right flank : AAAGCGCAAAAGCATTCTTTCCGATAGATCTAACGAAATTCCCAACGTTAACCGACGTTAAACCTTGACAGGAAAAAAACGCAGATTCTCCAATAGCAGTCACAATATAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAACAGTATAT # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.12, 8:0.8, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 16-329 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCER010000088.1 Flavobacterium psychrophilum strain 1350-M11 contig00088, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =============================== ================== 16 38 100.0 31 ...................................... GACTACTATTGGAGATCAGGCTTTTGCAGAT 85 38 100.0 31 ...................................... GACTACTATCGGAAAAGGGTCTTTTGCAGAG 154 38 94.7 31 .............T....A................... AACTACTATTAGAAGGGGTATTTTTGCAGGC 223 38 97.4 31 .............T........................ GACTGATATTGAAAATGGTGCTTTTTTCAGT 292 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== =============================== ================== 5 38 98.4 31 TGTTCTGGTTTAACATCAGTTACAATTCCTAATTCTGT # Left flank : GGTGCTTTTTTCAGTT # Right flank : | # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTCTGGTTTAACATCAGTTACAATTCCTAATTCTGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [15.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //