Array 1 226439-226706 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASJ01000002.1 Gilliamella apis strain NO15 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 226439 28 100.0 32 ............................ GCCGCCTTGTTTTTTAGTGCGTTTTTTAATTG 226499 28 100.0 32 ............................ TTCACGGCGTTTGCTCGGTATTAATCAGCACG 226559 28 100.0 32 ............................ TGTCCCTGCGGTGAATTTAGGAGGTAATTATC 226619 28 100.0 32 ............................ ACATTGTTACATTTTTATTTATTTCTTTTTCT 226679 28 96.4 0 .....................A...... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : TCAGCTAGTTCCAATAATTAAAGTGTATTTTGGCAAATAAGTATGGTGTATTTAATTTAGCGACATTCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCTGTGTTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTATTCACCGTATAGAACTAGCCACCAAACAACAAAACGTCCGAAACTCAAACAACCAAAAATTTTGAGGAACGGGGTTTTTAAAACTTAAATTCCTACTTATTGTTAACCCTTTTTTTTAACTTAAAATAAAGTATTTAAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTACCAACTGCATTTATAGTATATTGGATTCTA # Right flank : ATATATAAGTGGCGGTATAGGTAATATCAAGTAGTACACCGCTTATTGAGTAGGTTAAAAATAGTGATTTTTTAAGAGGGGATAAAGGGGATATTATTTCTAAAAAACAGCAAATAATCGATGCTGTTTTCGAGCTATCAGTGTTCATCTTTACAAAAGTTAACAATTAAACCGTCAAAAAAAGTTGCATGGTTTTTTGCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTTATGCCATTAGGCTTAAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACACAACACACAACACACAACCTGCCCAACCTATAAATTCACCTTTCTAAAGTTAAGCTCACGCCGTTTATTATTTCACTACAGTTTATTATTTCAGCAATTCCCGAAATTTCAGCAAAATTTTTCAAAATTTCTTAGTTTAGTCTTTTTATCTCGGCCGATGGTTTTGGTATTAA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 229079-229346 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASJ01000002.1 Gilliamella apis strain NO15 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 229079 28 100.0 32 ............................ GATTTGTGAGCCAACGGTTAGTTTTTCTATCG 229139 28 100.0 32 ............................ ACATGTATCGTTTTAAACCGTTCTAGCGATAT 229199 28 100.0 32 ............................ AGTCAGCAGAAACGGTGCGAGTTATTGATAAA 229259 28 100.0 32 ............................ GTGATAGGGTTCTGGAATAAAAACAGTTATAG 229319 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : TAGGTATTGAAGCTGAGGATAAGAAAAATAATGTTAGGGCGATAAAAGCAATTTTGTGGTGCGACTTTGGCAACGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGTAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAATAACCACAAAACAGCAAAACGTCCGAAACTCAAACAACCAAAAATTTTGAGGAGAGGGGTTTTTGAAAATTAAATTCCTACTTATTGCTAACCCTTTTTTTTGACTTAAAATAAAATTTTTAAAAATCAATACGTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACAACATTTATAGTATATTGGATTCTA # Right flank : ATACACCGCTTATTGAGTAGGTTAAAATGGTGATTTTTTAAGAGGGGGATAAAGGGGCTATTATTTCTAATAAACAGCAAATAATCGATGCGGTTTTCGAGCTATCAGTATTTTCTTTACAAAAGTTAACAATTAAACCATCAAAAAAAGTTGCATGGTTTTTTGCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTTATGCCATTAGGCTTAAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACACAACACACAACACACAACCTGCCCAACCTATAATTTTACCTCTCTAAAGTTAAGCTCACGCCGTTTATTATTTCAGCAATTTCCGAAATTTCAGCAAAATTTTTCAAAATTTCTTAATTTAGCCTTTTTATCTCGGCCGATGGTTTTGGTTTTAACCGTAGTTATTTTACAATCTATCTCTTTTTCTAATTATGCATTAACCACTAA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10380-10653 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASJ01000027.1 Gilliamella apis strain NO15 NODE_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10380 29 100.0 33 ............................. GTTTTTAGTCGTGAATATTGGTCGGGAACACCT 10442 29 100.0 32 ............................. GGAAAGGGCGAGAATGAAGAAATCACTGAGCC 10503 29 100.0 32 ............................. CCTGCCATTTATGATTCCTTGCTATTTTCTAT 10564 29 100.0 32 ............................. TATATCTCAATCCAACACAAATTTTTGTTGTG 10625 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 100.0 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : TTTAATGATGATGGTGAACCAACCAGCACCGCCGGCCGCCCTATTCTATCGGCCATTGAAGGTCAAGATTGTGATCAGGTGGTAGTGGTGGTCACCCGCTACTTTGGTGGCATCAAATTAGGCACAGGCGGACTCATTCGGGCTTACGGTGGTTCGGCTAGTCACTGCTTACAACAAGCAGAATTAATCGAACTTATTGCTAGAACATCATTACAATTTCATTGCTATTACAATGAATGGCCAATTATTGAAAACCGCTTAAAAGAACTAGATGCAGTCATTGAACAACAAAATTTTGATGCTGAAGGTGTAACTGTCATTATTGCTATAACACAAGATAATGTAGTCATACTTAAAAAAAATATTAGCGATATTACTCGCGGTAGAGTGATTATCAAGACTTAAAACACCTGTGTAAATATCCATCCAAATACAGCAAAAAAATTGGTAGAAATTGTAGAATGCGTATTTTAATTATAAAACAAACGGTTATAATTAGA # Right flank : GTCTTAAAACCAGAAGATGAAGTAGATTTTATTCTGCCTGGTTATATGCCTATCGTGTGGTCACGTTTTTATGCCAGTGATCTGCACTATGAAAGTATGCTAGGTAAAGGTTGGATACTACCTTATGAGCAGCACCTTTACCAAGAAAACAACATCCTTTACCACGTTGATAATCAGGGAAGAACGCTACCTTTTGAAATTATCGAAGAAGGCCAAAAAATCTATCTTGCTGATGAACAAATTTTTTTGATTCGTACCGAAGGTGGTCATTATGCCATCCAGACCTTAAATGACCAATTCTATTATTTTGGAGAGGTGTTCGATAATGGTGAAAAAGCTTACCTACAACGCATAGAAGATAAGTTTGGTCACTATATCCACTTTAACTATGACAATGACCAACTGACCGATATAACAGCAACAGGTGGTATTAGGCTACACCTACATTACCGACATCCCAAAGGTAAAGTTACTGAAATAGTGCGTATTATTGATAACCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 15109-15321 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASJ01000027.1 Gilliamella apis strain NO15 NODE_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15109 29 96.6 32 ............................A GAATCAATTTCAATTTCATCAATAAATAAATC 15170 29 100.0 32 ............................. AAGGTATCGATTTAATCGACCAGATTTTACCG 15231 29 100.0 32 ............................. GAACTTTTCGCGTCAAATTTTGTTCTATCTCC C [15239] 15293 29 82.8 0 .....................C..TTGA. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.9 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : ATTAATGAAATAGTACATGTTAGACGTTGATCGGCTTGAGAAACATATATCTGACGCATTAGGAATCCCATTACATGAACTTTGGCCTTCTCGTTATGTTCGGGGAAAAAGGTAAGGAGTAAGTTTAAGGCTGCATTAAGCGCTATTTTGTTTTTTTATTTTTTGAACTGGTAATAAATTGATAGCGGCTTTTTTGCCAATCAATCCACTGGCTTAAAGCATCAAGTTGCATGATGTTTATTTGTTTTAAAAAATTTTTACGCCAATAAATTAAAGTCCGTTTTGAAACACCTAATTGTCGATCAATTCCAGCATGACTTATCCCTTCACTTATAAGGTCTATGTAGGGAAGCCATAAGTCTATAAAGTGCATTTTATGAAATGGGGTATTTGTTAATGGATTAAACGACTTATTACAATGCGTACATATAAATTGGGGACGATCAGGATTGATGATAGGGCTAATCAATCTTGGGCATTTTTTATGACAATGCGGGCAT # Right flank : GTTCCCTGTGTGTACAGGAATTAACTTCAAATTCAAACAAACCACCTTCTGGCGGTTTTTTATTGCCCAGAATTCCTAAATAACTTACTATTGCCAAAAAAGGAGATGGCATGAAAAGAATTACTTTATTTGGGATAGCTTGTTTTGCTTTGTATGGTTGCGGTAACGATAGTGATGGGCAAAAGGTCACTGAGGAGATGTTACTTGGTGAGTGGAACTGCAAAGTTAGCTCGCAAGAAGCAGAATCAAGGAATGGTAAGTTACAAGATTTTGGTGATCCAGAGTTCGAGGAAAATAAATACATTTTTACCAAAAAAGATGGAAAGCTTTTTGTAAGTTTATCTTTATATAAAGAAGATTTAATGCCTTTTAATCTAGAGGATATTTACAAAAGACCTGAGTATACGGAATATGATAGACAAAGAACTCAAAAGATTAAATACCTATCAAAAGATAGTTTTAGTCTAAACGGTACATATACAATCATCGATAAAAACAAC # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.38%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6364-7553 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASJ01000029.1 Gilliamella apis strain NO15 NODE_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6364 29 100.0 32 ............................. GTAATGTCACATTTAGTACATTCGATGGTTCT 6425 29 100.0 32 ............................. TTGCTAGGTTGGACTCCACAACATGCAAACGA 6486 29 100.0 32 ............................. CATAAATTTGCACGTGTTGATATGGACTATAC 6547 29 100.0 32 ............................. GATGCAACAATGCAACAGCAAGATTTTTATAT 6608 29 100.0 32 ............................. TATAAAATGCACATTATACAAACAACATCAGA 6669 29 100.0 32 ............................. CAATTAGTTTATAAAAATTCTCTAAAAAACAT 6730 29 100.0 32 ............................. TGCCATAAAAATGCTCCAATAAATTGATATAG 6791 29 100.0 32 ............................. ATCGGTTTCGTTACCACCGTTTTTATACCGTT 6852 29 100.0 32 ............................. CTAGGCAACACGCAACCTAAGGACAGGTTACC 6913 29 100.0 32 ............................. GCAATTCAGAGAACTATACAAAGAAAAACGCA 6974 29 100.0 33 ............................. CGCATTAATGGTAAAGATAAACTTGTTTTAGTC 7036 29 100.0 32 ............................. GGTTTAGTATGAGTAACGATATGGAAAATAAT 7097 29 100.0 32 ............................. TGGTTGGGTGGAGTTACAAAAGCAAGAAAAGA 7158 29 100.0 32 ............................. ATGTGATTGATCTCGACATGTCAGAAGATGGC 7219 29 100.0 32 ............................. CGAATTAATAACTACCTCAGTCGTGTAGTGGT 7280 29 100.0 32 ............................. CCGTCTTTGATTTGAAATGTTTTAGCCCAGCC 7341 29 100.0 32 ............................. GCTTATACAGTTTATATAAAAGGCCCTACTAA 7402 29 100.0 32 ............................. ATGTGCCATAGCGCCGCGAATATCAAAGGCTA 7463 29 100.0 33 ............................. TCTTCTTTATAATTTGCCGATAGACTGTCTAAC 7525 29 93.1 0 ..........................A.T | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.7 32 GAGTTCCCTGTAGGTACAGGGATATACCG # Left flank : CTTATCGAAGAAGTTTTATCTGCTGGTGGAATTGAACCGCCCCCAGCTCCAGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTCTTGCTGACAGTGGCTTTAGGAGTCGCTAAAAATGAGTATGTGTGTTGTAGTAACTGAAAATGTCCCTCCAAGGTTACGAGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGGGTTTACATCGGTGATATATCAAGACCAATAAGAGAAATGCTATGGCAACAAATCACTAAACTTGCTGAGGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACTGAGTCAGGATTTGACTTTCAAACTTATGGTGCAAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGGTTGGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAATGTTCTTTAAAAATTAGAAAAATTTGGTAGATTTTAACTAACTAAAAAATATTATATAAAACAAATATCTATATTTAGA # Right flank : TTTATTAGCTAATAAAATTACATCCAAATGGTTTTAAATTATCTACCTTTATGTGAGTAGATGGTATACACTCCTCAATATTTTTTACAAGGCTCTAATGATAGCTATTTATAAAAATAAAAGTTAATAATCATATGCATAGATAATATGAAATAGAGGTTTTTTAGTTAAACTAAAATAATTATTAAAAATAGCGTACAATACTCAATATTAATCGTAAATTCATTATCAATCATTTAGGAATTTTGTATGACAGGTAAATTTATTGTCATCGAAGGTTTAGAAGGTGCAGGCAAAACAACAGCCATCAATACTGTTGCACGTATTTTAAAACAACATCATATTTCTGATTTACAATTTACTCGCGAACCTGGCGGTACTCCAATTGCAGAAGCATTACGAAATATTATTAAAAATGGTTTAGATAATGAGCCGCTAACTGATAAAGCGGAATTGCTAATGCTTTATGCTGCTCGTATTCAATTGGTTGATAATGTAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTAGGTACAGGGATATACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13875-13425 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASJ01000030.1 Gilliamella apis strain NO15 NODE_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 13874 28 100.0 32 ............................ ATTGATGCTGACAAAATCAGGTGATGTAACCA 13814 28 100.0 32 ............................ ATTCGGGGGCGCCGGTAGTGTATTGTTGTTAA 13754 28 100.0 33 ............................ CTGCTAATGGTACCGATTTTATTAAAAATAAAA 13693 28 100.0 33 ............................ CTCCTCAAAACCTGTTGTAACATACTGTATTTT 13632 28 100.0 32 ............................ AACAATCAAAAAGCCTGTTACTAGCAGGTTTT 13572 28 100.0 32 ............................ GATGGAATAATTCCATCGGAGGGGGATTTGAA 13512 28 100.0 32 ............................ TACCCCGCCTAGAGCTTTACCAATCGCTTTAC 13452 28 92.9 0 ....................TA...... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.1 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : ACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCGCAAAACAACAAAACGTCCGAAACTCAAACAACCAAAAAAAATTGAGGAACGGGGTTTTTGAACCTTAAATTCCTACTTATTGCTAACCCTTTTTTTTTGACTTTAAATAAAATAATTAAAAATCAATATGTTGAAAAATAGCTTAAAAAAAGGGTTTTTAATAGTAAAATTACGCTTTTTCTTTTTGCCAACTGCATTTATAGTATATCCGGCTCT # Right flank : TATAGTAAGTGGCGGTATAGGTAACATCAAGAAGTACACTGCTTATATAGCGGTTTAAAATTGATTGCCTAGTGATAAATAAACTGACAACAAATTAAATTTATCTATTTAAAAAATCCTTAAAGCAAATTACTCCCTCAAAAATTGAGAAGAGGAGAGAATTGCTTTTAATCCTATATTGCTTAGTCTTTCTGGTTAAAAATTGAATCTATATCAAATTAGGCTATAATGCCGCATCGTTTAATTTTTATTATTAAAAATGAATATTGGTTTTATTGGCGCCGGTAAAGTGGGTTGTAGTTTGGCTAAATATTTCAGCCAATGTGGTTTGCCAGTCGTTGGTTTTTATAGCCGTGATGCACATCAAGCACAAGCAGCAAGTGATTTTACGAATAGCAAAGCATATTTAACTTTATCTAACTTAGTAGAGGATTGTGATTGTCTATTTTTGACTGTGCCGGATAGTCAAATTAGCTCAGTTTGGCAAGTGGTTAGTCGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2654-2267 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASJ01000034.1 Gilliamella apis strain NO15 NODE_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2653 28 100.0 32 ............................ ACGCTGCCCGGGCGAGATTTTCGCTGCTATCG 2593 28 100.0 32 ............................ TACCAAAAAAATAATTCAAAAATAATTCAAAA 2533 28 100.0 32 ............................ TCGTTACGCCAATATTTGTTTTCAAATTGTTT 2473 28 100.0 32 ............................ TGCACTGTCCGCTAGCGCTGGTATAGCAATGC 2413 28 100.0 32 ............................ ATTGATTTGGTCACCGTAAGATAACTCGCCTA 2353 28 100.0 32 ............................ ATTCATTTATCCATCCGTTACCAAATTCTCTT 2293 27 92.9 0 .....................A-..... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.0 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : GAAAAATAACATTAGGGCGTTAAACAATCATTGCCCTGCTAAGGCAATGGCGTTGATGCTGACGAAGTTGGCGATAAAATCGATTTTGTGGTGCGACATTCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGAGCGTTAAAAGCGAACGAAGACGGAGGGCAGTCACGCAGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAAAAATAACCACAAAACAACAAACGTCCGAAACTCAAACAACTAAAAAATTTGAGGAGAGGGGTTTTTGAAAATTAAATTCCTACTTATTGCTAACCCTTTTTTTTGACTTAAAATAAAATTTTTAAAAATCAATATGTTGAAAAACCGCTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTACCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TATATAAGTGGTGGCATGGGTAACATCAAGAAGTACACTGCTTATTGAGTAGGTTAAAAATGGTGATTTTTTAAGAGGGGATAAAGGGTATATTATTTCTAATAAACAGCAAATAATCGATGCTCTTTTCGAGCTATTACTGTTCTTCTTTACAAATGTTAACAATTAAACAGTTAAAATAAGTTGCATCGAGTTTTTTCAATTACTATAATTTTCCACTATATTTATATAAATGGATAGATTTTATACTTTTTAGTATAAAATTGTAAATAAATCATTAATTTAATTGACAGGAATGTCGGATATGTGTTATAATTTACAACACCAAACACCAAACACCAAACCTGCCCAACCCATAATTTAACCTTTCTAAAGTTAAGCTCACACCGTTTATTATTTAATCACAGTTTATTTTTTCAACAAATTCAGCAAAATTTTTCAAAATTTCTTAATTTAGCCTTTTTATTTCGGCCGATGGTTTTGGTATTAACCTTGGTTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 96141-95875 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASJ01000009.1 Gilliamella apis strain NO15 NODE_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 96140 28 100.0 32 ............................ TAATGTCATATTTCTAAACCACCTATTCGGCG 96080 28 100.0 32 ............................ CCACCCCAACGCCTCGCAATTGGTGGTTGTTG 96020 28 100.0 32 ............................ CAGATGACATTTCTTTTAACGTCTTACCTGAT 95960 28 100.0 32 ............................ ATTATGTTTTGACGTTGAGCAACCGAAGGGCG 95900 26 85.7 0 ...................--.A.A... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.1 32 CTTCTAGGCTGCATAAGCCGTTTAGAAA # Left flank : CGAAAAACGTTTAACCGCACAAGGTAAATGGTCAGCCGAGGTAAAAAGCAAAATGGTTGAAAAATGGGGTAGCATTCATTTGAACTATCCACACCTTCATTTTGCTAGTAAAAGCACAGGGCAACATTTTATTATGTGGCTGAAACAACAAAAATGTGCAACGGCTGTTCAAGGTACATTTAATAGTTACGGACTCAGCAAAACTGCTACTGTTCCTGATTTTTAACTAAATAATAAGGGCATTATTATAATGCCCTTAACTGCCAATATCTAACCATATTAACAGCATAAATTTTGAGGAGCGTACTTTTTAAAGCTAAAAAATTTGAGGAAAGGGGGTTTTTGAAACTTAAATACCATGCAGTGTTAACCCTTTTTTTTAACTAAAAATAAACTGTTTAAAAATCAATTAATTGAAAAACTACCGAAAAAAAGGGTTTTTGCAAAGTAAAATAGATTTTGCCTTTTGCATAACGATGTTTATAGTATTTTGGGTTCTA # Right flank : TTTGAGGAACGGGGTTTTTTGAGCTTAAAATCCTTAATAACTGAAATGATCTGAATAGGTAAAAATATCTAAAACTAGGTAGGCAAGAATTATGAAATAAGGTTTTTGCGGATTGATGTTGTTGAGATTAAACTTTACAAAAGTTAACAATTTAGATTCTAAAATCAGTTGCATAGATTATTTTCAGTCACTATACTTTTAGCGGATTTTAAGTACAATAATCGGCTGTTATTTAGTCAAATTAACTTAAAAAAACCAAATAAAACATGGAATTACTTGACAAGGTTGTTGTTATGAACTATAATTTTAAACACCAAACACCAAACACCAAACCTGCCCAACTTATACTTTAAATTCATCTCGTTATTGCAATCAACGTTTAGTCTTTTCTAATAATTTATTTTTTCCTCGATTTTTAAGGTTATTTTTATTTTCGCCGCTTTTTAGCGTTTTCGCCGTTACTTTAGTTTTATTCTTTTCATCAAGTAGTTATGCACTAA # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTAGGCTGCATAAGCCGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 105867-105659 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASJ01000009.1 Gilliamella apis strain NO15 NODE_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 105866 28 89.3 32 ...T...G.T.................. TGCGCAACTTCTTCTAATCCAAATCCTTGCTC 105806 28 100.0 32 ............................ GCAAATTAACCTTGCTGTATGTTTAGCCCATG 105746 28 100.0 32 ............................ CTAAGTCGGAATCATCGCAAACATTGATTATC 105686 28 75.0 0 .................C..CAA.ATC. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 91.1 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : TTATTTCTTAGTTCTTAGGTATTAAAGCTGAGGATAAGAAAAATAACGTTAGGGGGATAAAGAGCGCTTTTGTGGTGCGACATTCGCAATGTGCTGATAACTGAGAGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGAGCGTTAACAGCGAACGCAGGCAGAAGGTAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCACAAAACAACAAACGTCCGAAACTCAAACAACTAAAAAATAAAGAACTAAAAAATTTTGAGGAGAGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATGATTAAAAATCAATATATTAAAAAATCACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCCTTGTCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TTTGTATCATCTTTTGGATAATTATAGTTATTTTAAAAAAGATCGTTTTTTACACAAAGTAATGTTATTTTATCATCATTATAAATTGAATTTACTGTCTAAATATCATGGATTTGATTCATTCGTCTGATCTTAAAACCATTTTACATTCCAAGCGTGCAAATATCTATTATTTAGAGCATTGTCGAGTTTTAGTCAATGGTGGTCGAGTTGAATATGTGACCGATCAAGGGCAGCAGTCATTATATTGGAATATTCCAATAGCCAATACCAGCTGTATTTTACTTGGTACAGGTACTTCATTAACTCAAGCTGCGGTGCGTGAACTTTCTCGAGCAGGAGTTATGATTGGCTTTTGTGGGGGAGGGGGAACGCCTCTATTTTCCTCGACAGAATCGGAATTTGCCTGCCAATTCTTTTCACCGCAAAGTGAATATCGTGCAACCGAATATCTGCAAAGTTGGTGTCAATTCTGGTTTGACGATAATCTCCGCCTACAA # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3834-4231 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASJ01000006.1 Gilliamella apis strain NO15 NODE_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================== ================== 3834 28 100.0 32 ............................ ACAAAACCATTTCTACTCACTAGTTAGCGGTG 3894 28 100.0 32 ............................ ATTCCGTTAGGTGCTTGTGTAGAATGACCGAA 3954 28 100.0 32 ............................ TGCGGATATTGTTATAAAACATTCCGATGATA 4014 28 100.0 32 ............................ ATACACCTCTTGCCACTCTTGTAATTGTGCGG 4074 28 100.0 32 ............................ TAAAAATGGAAATATTGTTTCTAAATATAAAT 4134 28 100.0 42 ............................ TGATAAGAAATGATAAGAAGAAAACTAAGAAAACCAAGAAAA 4204 28 78.6 0 .................CTTT....TT. | ========== ====== ====== ====== ============================ ========================================== ================== 7 28 96.9 34 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : TCAGCTATTACTGATAATAAACGTTTATTTTTATAAATTAGTTTAGTGCTTCTTATTTAGCGACATTCGCAATGTGCTGACAACTGCGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTAGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTATTCACCGTATAGAAACAACCGCAAAACAACAAACGTCCGAAACTCAAACAACCAAAAAAAAATTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACATAAAATAAAATAATTAAAAATCAATATATTAAAAAATCACTTAAAAAAAGGGTTTTTATTGGTAAAAATAGACTTTGTCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : AGTAATTAAAATGGATTTTTAGTATTTAAAACTCGCTGTTCTCAAATTTATCTATGAAATAATTAAAACGCTTATATAAGCGTTTTAACTCTGATTAATATCATTATATCTACTATAAACTATTAGAACATTAATAGTTGTACAATTAAATTGCAGTCATATAGACCTGATTATTCAGTAAGTTTTTAGGATCAAACTGTTGTTTAATTGCACGCATTAATTGGCGATTTGCTTCAGGAATGGCAGCATTGTAATAACTTACTTTCGCCGTTCCGATGCCATGTTCTGCTGAAGGCAATCCTCCAAATTCAAGACATTTTTGATAAAGCGCTTGGTGAACATTTTGCAGATCAGATTGCCATTGTTTGTCATCACGATTATCACGCAAAATGCATAGATGAATGTTACCATCACCAGCATGACCAAAGGCTAACATGCGCATTTGAGTTTGTGCTTCTAGCTGTTTGGTGAAATTGATAAAATCGCTAATGCGATTTATT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 62854-63180 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASJ01000006.1 Gilliamella apis strain NO15 NODE_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 62854 28 100.0 32 ............................ GATAGCATTTAGAAAATCGCCGTCATCTTTAT 62914 28 100.0 32 ............................ TATCATTTGCGATTCTATTTGTGCCAGCAATC 62974 28 100.0 32 ............................ AACATATAAAGGTTGGGAAAATGCCATTAATT 63034 28 100.0 32 ............................ ACTTGAGCGCATCGGCGCACAATTTAATAACA 63094 28 100.0 32 ............................ ATTTCACTAATTGAATTAATGGCTGTTTTAAA 63154 27 85.7 0 ...C...A............A..-.... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 32 GTTTACTGCCGTGTAGGTAGTTTAGAAA # Left flank : TAAGAGTTTATTTTGGCAAATAAGTTTGGTGTATTTAATTTAGCGACATTCGCAATGTGCTGACAACTGAGAGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCTGTGTTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGACCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGGCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAATAACCACAAAACCGAAAACGTCCGAAACTCAAACAATCCAAAAAATAAAGAACCAAAAAAATTTGAGGAACGGGGTTTTTGAAACTTATAATACCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAAATCAACACCTTGAAAAATGGCTCAAAAAAAAGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACAACATTTATAGTATATCGGGTTCTA # Right flank : ATATTAATTATTTCTAAAAAGATTAGGAAAAATTTTTCAAAAAGCTAAAAATCCAAATTAGTTATAGCTTTGTTAAATAAAAAAAAACCCAGTAATTGGTTGTCCAACTATTGGGGGTCACTTCAAGGAACGGTTTTTTATTATTGGTTAGATAATTTTACAATTATCCTTGGTATTTTTTCATGACAATTGATGCATTAGTACCGCCGAAACCAAAGCTATTAGACATTACTGTGGTTAATTCACGTTCGGTTGGCTCGGTAATAATATTCATGCCTACTGCTTCATCTGCAAGTTCGTCAATATTGATACTTGGTGTAATAAAGCCGTGTTCAAGCATAAGTAGTGAATAAATCAATTCTTGTGCACCGGTGGCACTTAATGAGTGACCAGTCATGGATTTAGTTGAAGAGATAGCCGGGATATTATCACCAAATACTTGTTTGATTGCCCATAACTCTTTGACATCACCAACTGGCGTTGAGGTACCATGAGTATTG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 108918-109244 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASJ01000006.1 Gilliamella apis strain NO15 NODE_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 108918 28 100.0 32 ............................ ATCATTGCGAAGAGCGAATGCCAACATCCATG 108978 28 100.0 32 ............................ TATTAATATTTTTTATTACATCATAGTTTTCC 109038 28 100.0 32 ............................ TTGATTTACACAAACCTGTCACGTTCGCAATT 109098 28 100.0 32 ............................ TAACGGTTCACGTGTTTACGTGCAAAAATCAA 109158 28 89.3 32 .......G...CA............... AATTTTATTTGAAGATACGCCGAGCAGTTCGC 109218 27 85.7 0 ....................-CC.A... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 95.8 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : CTAAATTCTATTTGCAGTTCAAAGTACCGCGTTACCAAGATTTGCCAGCTAGCAAGTTTGACGAGGCTATTAAGTGGTTGGGTGGTGTAAGCATGAGAAACGGGTTGTCTGATGAAGATTGGTACGATTTAGCTTGGCTTTATAAAGTAGCAGATAGGATGCGTTCTCAAATTGAGCTTATCGAGCCAGCCCTTAGGGCAATTGATTCTAGTTTTGTCAGTGCATTTCACTCTATGTCAATCGAGTACAAACGAAATTTACATAGTGCAAAATTAATTATTGAGCGAGAAACAGCGCATATTAAAGCAAAAAATATAATAGACAAATGGAATAGGGTTTTACCTGTAATTAGACATCATTAATTAGTTAACCCTTTTTTTGCTGATTCTTATAATTCATTTAAAATCAAATGATTATAAACAGGTGTAAAAAAAGGGTTTTTAGCTACAAATTGGTTATTATTCTTTTTCTGAACAAAGTTTATTGTGTATAATGTTCTA # Right flank : ATTCAAAATTAAAACTATCACAAACCGCCTTCTGGCGGTTTTTTATTGCTCATTATTCCGCAAATCAATAACAGATTTAACGCTCACATGAATAGCTCGACGGAGCAAAAGCATGAAGCTGCCTACCTTCAGTGGATTGTTTTCATGTGAGCTTTTATTAAAAAGGTAAAAGGAGTGATTAATGAATAATTTAAAAAAATTATAAGTCCCATTTTGCAATACAACAATCCAAGCCATTGAGCATAATGGACAGCTTTATGTTTCAATGCGCCCCATTTGTAAGAATATTGGTTTGTAGTGGGGATCTCAGTATAACCGTATCATGCGTGACGAAGTAATGAAAACCTGCGTCTTCATTATGAAGACTGAGATTCTATAACCCTCTAATTTCTTCTTGGTTTATTAATAATATGAAAAAATCCATCACCTTTAAGAGATCATTTAATGATCAACTTATCGAAATATTATGCTATTATTCTGACGATAAAAATAAACAGGAT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 62024-61817 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASJ01000015.1 Gilliamella apis strain NO15 NODE_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 62023 28 100.0 32 ............................ ATTCTCCTAGGCCTAAAAAGAAAAAGGCTAAC 61963 28 100.0 32 ............................ GTTTAGAAAGCATTATGATTGAATATTTCATA 61903 28 100.0 32 ............................ AAACGAAATAACGGCTAGACATTGCTCATTAA 61843 27 96.4 0 ...................-........ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTTCACTGCCGTATAGGTAGTTTAGAAA # Left flank : CTTATTTAGCGACATTGGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGAACGTTAAAAGCGAACGAAGGCGGAAGGTAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCACAAAACAACAAAACGTCCGAAACTAAAACAACCAAAAAATTTTGAGGAAAGGGGTTTTTAAAGCCTAAATCCCGCCAATAAATCGTTAACGTTAGTTATAAAATCAACTAGTAACCAAAAAATTTGAGGAGAGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATGATTGAAAATCAATATATTAAAAAATTACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGTCTTTTTAACAACTGCATTTATAGTATATTGGATTCTA # Right flank : TAATATTGTATAAATTAAAAATCCAGTAGCTCAGGGTTAATACCTAGTGCGCTAGCTATTTTAATACGTGTTGCTTTCCTTAATTTTTGACTTTTTTCATATTGAGAATATGCAGATTGACTGATACCGATTTTATTGGCAACTTCAACTTGAGATAATTTTAGATATTCTCGCCATGCTTGAACTGGTGAATAATTATTATCAAAAACCAGATTAACAACTTCGTTGGGCACACCAGTATCAGTATTAATTTGTTTAGTATTCGCTAATTCTAAATATTGTGTATAAGGCATAACCACAAACTGTGGTTGCCCTTGTTCATTATTAATAAACTGTATGTTATTAGTAAGTGCGTTCATCTCGTTTTTTCACCTCTTCGATAGAAACAATATGAATAATGCCATCAAAATTAAAAAACACTCGATAATTTCCAACTCTTAATCTGTACTGATATTTGTAGTTAGTCAGAGATTTTACATTAATGCAATTAGGCATGTTTG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 57146-56698 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASJ01000016.1 Gilliamella apis strain NO15 NODE_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 57145 28 100.0 32 ............................ CTGTTCGGCGGTAATTTCGAAATAATTAAATA 57085 28 100.0 32 ............................ CATAGCCAGCATGTGCTTGGTAATGCATCGGA 57025 28 100.0 32 ............................ TGTGGTAGCGGTCGGCAGCGGTGAAAACTATA 56965 28 100.0 32 ............................ TCAATTGATGAATTGAGGCTTGCTGCCAAAAA 56905 28 100.0 32 ............................ GTTATGACTACCACCGACAAAAACCACTCGTT 56845 28 100.0 32 ............................ TGCCGAGCATAAATGCTTAAATAACCGAAAAG 56785 28 92.9 32 ............G.......T....... TCGAGTTACAACTCCTCAAATTGCAGAACACG 56725 28 67.9 0 .......G....G....CG.T..TTTT. | ========== ====== ====== ====== ============================ ================================ ================== 8 28 95.1 32 GTTCACTACCGTATAGGTAGCTTAGAAA # Left flank : CCCATCCAATAAATCGTTAACGTTAGTTATAACATCAGCTAATTCCAATAATAAAAGTTTATTTTTATCAATCAGTTTGATGCTTCTTATTTAGCGACATTGGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGAGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCGCCGTATAAAAACAACCACAAAACAACAAAACGTCCGAAACTCAAACAACCAAAAAAATTGAGGAAAGGGGTTTTTGAAATCTAAAACATCCTACTACTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAATATATTAAAAAATCACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTTTCTTTTTGCCAACTGCATTTATAGTATATGGGATTCTA # Right flank : TGCCTGTCATTCGACCACTCAGCAGATGAAGTAACCAAACTTTTACAAAGAGCTAAAATTATCATTGATGTACAAAAAAGCAACGATAAGCTACGTAAAAATTGTAGGTAAGGATTATTTTAAAGATGATTATGAGAATGGAAATTTGTTTCAATATTGAGTGACCTTGTTTGTTGATTATGAAGCTAAAAATGATTTTGGTGTTGATTTAAAAAACACTTCAATATGTTATTTTTATTCTATTTTAATAAGGAATGATTATTTTATGTTCCCAGATTTTGATAAAATGGCGATCTCAAATAAAATATATAGTTATATTGATTTAATGGCATCAATAGAACATTTTCATTCTTCTTTATTTGATATTGGAAAAATAAGTATTGTCGATAAAATATCGTACCAGATTGATAAAAATAATTTCCTCTATTATGAGAATGATTGAATTAATAACTTTTATTGCACTTGGCTAACAAATTTTATACTATCTATCAAAATTATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 26157-25701 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASJ01000018.1 Gilliamella apis strain NO15 NODE_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26156 29 100.0 32 ............................. CTTCTTTTTCTAATTTTAATCCATCAATTCAA 26095 29 100.0 32 ............................. GGTGAATTCGTTTTTACAAAAGAAGCAACCAA 26034 29 100.0 32 ............................. CCATTTGATTGGGTGCTAGGTATTAGCTGGAA 25973 29 100.0 32 ............................. CGCATACAAGATGCCCCGTTTTGTCTAATTCG 25912 29 100.0 32 ............................. GAAAACGGTAAACGTTTCTAATAATACTATGA 25851 29 100.0 32 ............................. TTAGCCGAGGGGTATAACCATTTGGCTAAAAA 25790 29 100.0 32 ............................. CCGGTTATCGAACTGCACGAAAATATATGGGG 25729 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : GGACAAAGTTCACAAGCTAAAAGTATTATATTGAATTTTAATAAATGCTATAGCCGTGAACAGTTCAATGGTGAATGGGATAAGGAAATTGAAGTTTCAACCCGTTTATCAAAAGATAATATTGATCTTTATTTAGCATATCAACAAGATGGAAAAGTTATTCCTTACTGTAGTAGTAACGAATACGCATGGGAACAAAGCCATGTTACAATTAGTGCATCTAAATGGGCTAGAGTTAAAAAAGCCGTCCCACAACTTGACGAACAGCCTCTAGAAAAATTGAGACAACAAATACATAGACCAAATGCCATTATTGTGTTAATTGAGCCAGAAAAAGAGCCTTCTTTTTATTCTAAGGAATTAGGCTTTTATCTAAATTAATTTAAAGTTAAATATTAATAATTTTAACTTGCAATAAGTTGAGTGAATTTCATACAGAAAAAATCGGTAAAAAATTACTCCCTTATATTTCAATTATAAAACAAATGGTTATAATTAGG # Right flank : TATTACTGGCTAATTCGTTAAAACTGCCTGGCTAGATTTGGGTGAGGATGGAATACTTTGATCATCTGCAAAAATCAGTAGTTCGCCGTCGCTATATCTAACGTTTTATGATTGATGGTGAGGTTAAGCCAATGTTAGCTGTATTAGAGTATTTAAATGAACATAAAATAAAACCCAACCGCCGACACGTTGGGTAGGCTGCGCGTGGGATTGGAGGTCCTGTCGGAGACTGCCCGCGAATACCTTTTAAATAGTATAGGTAAAAAAATGACTGGCGTAAATATTGAATTCAATGTACAAGACGCACTAATCAACATAGAATTTGCTTTGCTCGATACACATGGTTTATTTAATCATATAAGTAAAACATTACTTGATATTCATGAAGCACGCTTTAATACACAGGAATCACCTGATGGTATACACCATGGCAAGCATTATCACCATGGTATCAAGAAAGTAAGCCAAAACAAAAAGATAAAGCTTAAGGCTCGATGGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //