Array 1 2085-1515 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYQM01000020.1 Escherichia sp. 20412-1 MOD1-EC4616_20_length_81568_cov_59.792230, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2084 28 100.0 32 ............................ GTGAGCCACTAACTCAAAGCCCCCGTCAGTGA 2024 28 100.0 32 ............................ AGTTCGTTAAATGCTTCCTCCATTTTCATATA 1964 28 100.0 32 ............................ TAACATCATTGCCCGCCAACCACCGGGACAAT 1904 28 100.0 32 ............................ GTGTTAACGAGAAATACCCGCGCACAGTTCGG 1844 28 100.0 33 ............................ TAAAGAACCGTCGGCAGAACGCGTTAACGGCAT 1783 28 100.0 32 ............................ CATATCGTTTACAGTGAATGCACTACCAACAA 1723 28 100.0 32 ............................ GCCAGACGTTCTGAAATCAGGCTCATACAGTT 1663 28 100.0 32 ............................ ACGCGTCGCAATATGCGTCAACGTCGCCAGTA 1603 28 100.0 32 ............................ TCCATTTCCGACGCTGTAACGTATATGAGCAT 1543 28 92.9 0 ....................T...C... | C [1520] ========== ====== ====== ====== ============================ ================================= ================== 10 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AATTCATTGTCGAGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCACAAAGCGGAAGCAGCGCATTAATCAGATTGTTAAGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGTGGGGGAGGTTCAGACCCTTTTTTTGATGATGATGGTAAGTTGTTGATAATTAGTGCTGCTGGACGGTAAGGATAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAGTATGTCACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACGTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCTGGAGTGATGGTTGGTTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 26110-25782 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYQM01000038.1 Escherichia sp. 20412-1 MOD1-EC4616_38_length_38617_cov_56.230008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 26109 28 100.0 32 ............................ CTCGTCTATAATGATTAGCCAGGGCGCATCGC 26049 28 100.0 32 ............................ AGCGAAACCTGGTGGCCGGAAGAAGCCGATCA 25989 28 100.0 32 ............................ GATCGAGCAGCGCAATATGCTGGCGGCGTTTC 25929 28 100.0 32 ............................ AAAGCTTGATGACATTTTAGAAAATTCAAAAG 25869 28 96.4 32 ...........T................ TGTTTGAGAACCTTCGCCGCATGGGGCATCAG 25809 28 85.7 0 ...........T........T..TT... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTACGTGTTTTTTATTCATGGCGGATCAATGCAAAAAAAGCCCGTACTTTCGCACGAGCTCTTCTTTAAAGATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGCTGCCTTACCACATGGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGCAAAACGGTCAAGAAGAATTTATTTAGATTGATTTGTTTGGTTACGCAATGAACACACGATTCATTCGCCCGAGATTATGGTCGTATGCGTTCTGATCAATTGTTTATCAAAAGCTACGAGGGAAATATGAGAGTGAAGAAATACCAATCGACCCATTTTTTAGAGTGACATGTAACTCATTGATTTTGTTTATTACTATTTTGACGTCTCGAAAAAGGGTATGAACCTGTGATTTTGTGATTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTTCA # Right flank : ATCCATACCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAAAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //