Array 1 95251-93883 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYEF010000008.1 Klebsiella pneumoniae strain MRSN20522 MRSN20522_contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95250 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 95189 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 95128 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 95067 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 95006 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 94945 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 94884 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 94823 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 94762 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 94701 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 94640 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 94579 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 94518 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 94457 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 94396 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 94335 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 94274 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 94213 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 94152 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 94091 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 94030 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 93969 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 93911 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2500-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYEF010000009.1 Klebsiella pneumoniae strain MRSN20522 MRSN20522_contig00009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2499 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 2440 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 2379 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 2318 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 2257 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 2196 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 2135 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 2074 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 2013 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 1952 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 1891 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 1830 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 1769 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 1708 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 1647 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 1586 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 1525 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 1464 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 1403 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 1342 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 1281 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 1220 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 1159 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 1098 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 1037 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 976 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 915 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 854 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 793 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 732 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 671 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 610 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 549 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 488 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 427 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 366 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 305 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 244 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 183 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 122 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 61 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : GCCGCTTTAACCCGCTCCGGCAGATCCGGGTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //