Array 1 1524449-1526124 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXTE010000001.1 Escherichia fergusonii strain RHB26-C04 RHB26-C04_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1524449 29 100.0 32 ............................. CGAATTATTAACGGCGTGGACGTTTTGGCGGG 1524510 29 100.0 32 ............................. ATCCCGTAATAATCGAGAAGTTCGATCAACTG 1524571 29 100.0 32 ............................. CTCACCAGTATTTTACCCGACAGCGTTAAATC 1524632 29 100.0 32 ............................. CCTGGCTGCGGCAGGCGTTAATTAATAATCCG 1524693 29 100.0 32 ............................. GCTACACGCCGAAAATTGAAAGCGACTGGCTT 1524754 29 100.0 32 ............................. TTCAGCCTTGTGTTTTTCCTTAATTGCAAGTT 1524815 29 100.0 32 ............................. CCCGCTTACCGTGGGCGCAAAATGTGCAATTA 1524876 29 100.0 32 ............................. TTTTCGAAACCGGCACCCCCTGCGCCTCCGTC 1524937 29 100.0 32 ............................. GAATAAATGATCATGACACAGCGTTGCACAAT 1524998 29 100.0 32 ............................. GTCCTACCTGTTGGCGATTTCAGCATCATCAT 1525059 29 100.0 32 ............................. AACTTTTTAACAATGTGGCGCGGGCGATGGGC 1525120 29 100.0 32 ............................. CCACATTGGCACGAAATATAGCAGCCAGAACA 1525181 29 100.0 32 ............................. CCCGTGGATTCACAGTAAAACGCAGCCGTATA 1525242 29 100.0 32 ............................. CAGCGGCCTCAACGCTTAAACCGCACCGCTTA 1525303 29 100.0 32 ............................. TGATCCGGGTGTCTAACGAACTGCTGAGCGAT 1525364 29 100.0 32 ............................. TTGCAAAGTGGAACTCGGCGCAGAACGTTATG 1525425 29 100.0 32 ............................. CCGAGGAAATCGACGCGCTGGCCCGGTCCGCG 1525486 29 100.0 32 ............................. GCTGAACCAATTGCCAAACCCTCACAGGATCC 1525547 29 100.0 32 ............................. CTACAAAAAACCCATCAGGCAATTCAACGGCA 1525608 29 100.0 32 ............................. GGGTATTTTGGTATTTTGCCTGGCGCTAAAAC 1525669 29 100.0 32 ............................. TTGGCGCGGATCTACAACCCTGACTGACGGGG 1525730 29 100.0 32 ............................. AGTGAGCCAGCCTGGATTGTTGAGGCGCGTAA 1525791 29 100.0 32 ............................. GCTGAAAAATTGGGGCATGAACTGGATGTTGC 1525852 29 100.0 32 ............................. ACGGCGCATTTTTGAGTTCCGTGTACTGCTCG 1525913 29 100.0 32 ............................. AAATTTCATAACGTCAATTTCGACGGCTGCGG 1525974 29 96.6 32 .........A................... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 1526035 29 93.1 32 ................T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 1526096 29 75.9 0 ........A..T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 98.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTCTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTATCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1540931-1541509 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXTE010000001.1 Escherichia fergusonii strain RHB26-C04 RHB26-C04_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1540931 29 100.0 32 ............................. CCGCCATTTCCACGCTACAGCCTCCGCTTCGA 1540992 29 100.0 32 ............................. GTCACTTCGTTTTTATCAACGGCCAGCACGGC 1541053 29 100.0 32 ............................. CATGCATTGCTCAGCCAGTTTTATGGCAGCCC 1541114 29 100.0 33 ............................. CGGTTATCACAGAGCTGAAACAGAACTGGAAAA 1541176 29 100.0 32 ............................. GCAAACAGAACGGGCACGTAAAATGGAATGAC 1541237 29 100.0 32 ............................. GTTTACATGCAGGCGCTGGTCACGTGGGCTGC 1541298 29 100.0 32 ............................. GATGGCTGTCATAAAAATTTCTCCGCTATTTG 1541359 29 100.0 32 ............................. CATTACGTAAAAGCGTAGAAGGCGAAAATCAC 1541420 29 93.1 32 .................A........T.. GCAACGACGGTGAGATTTCACGCCTGACGCTG 1541481 29 89.7 0 .T.........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 10 29 98.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTGAGA # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAACCCCATCAAGACGCCTTTGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCATCGGGAAGGCCGGTGTTTTTGAGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //