Array 1 393-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCNJ01000058.1 Klebsiella pneumoniae strain COL-Kpn57 contig_16_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 392 27 93.1 32 --........................... TACAGGACGACAGCATCCTGGAACATTTCGAC 333 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 272 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 211 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 150 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 89 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : C # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-209 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCNJ01000115.1 Klebsiella pneumoniae strain COL-Kpn57 contig_54_0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 27 93.1 32 --........................... TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 60 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 121 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 182 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-575 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCNJ01000116.1 Klebsiella pneumoniae strain COL-Kpn57 contig_54_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 27 93.1 32 --........................... CGGAAATTTTGATTAGTTGAATCTGTGCCATT 60 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 121 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 182 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 243 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 304 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 365 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 426 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 487 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 548 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-575 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCNJ01000117.1 Klebsiella pneumoniae strain COL-Kpn57 contig_54_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 27 93.1 32 --........................... CACGTCCGGAAACCACGGGTTATCCGTGTAAT 60 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 121 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 182 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 243 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 304 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 365 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 426 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 487 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 548 28 93.1 0 .....A......................- | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-329 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCNJ01000118.1 Klebsiella pneumoniae strain COL-Kpn57 contig_54_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 27 93.1 32 --........................... GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 60 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 121 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 182 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 243 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 301 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //