Array 1 1190917-1190169 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063199.1 Vibrio sp. SCSIO 43132 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1190916 28 96.4 32 ...........C................ AAAACCCATCGCGGACCGAACAATAGTTCGAC 1190856 28 96.4 32 ...........C................ TAACCTATCTCTAACAACTTTGAATGCAATTC 1190796 28 92.9 32 ........T..C................ TCAAATAAAACCGTTGCGTAGTTGTGGAGTCG 1190736 28 96.4 32 ...........C................ CTATGCAGTAGCGCTAAAAAATCGTCGGTTGG 1190676 28 100.0 32 ............................ TTATCGTCAAAGAGCGCACCAAAGCCCGCTAT 1190616 28 100.0 32 ............................ TCCGGTCTCGAAAGAGAATGTGGATAAGAGTG 1190556 28 100.0 32 ............................ TCAAGATAATCAACGTCAAACGTTGCTAAGTA 1190496 28 100.0 32 ............................ ATGCTCCAAGCCTTCAGCAACATCGGCGCCGA 1190436 28 96.4 32 .......A.................... TTGATGGGTTTTCCTTCGCGTTCGGCTTCCAT 1190376 28 100.0 32 ............................ GATAAGAGTAGAGAAATTGCTGATAAGTGCTT 1190316 28 92.9 32 ...........C.C.............. CTTGATGTGGTACAAACCCGCACGGTTTGTAA 1190256 28 96.4 32 ...........C................ CTAATAAAAAACAAACGGGTGGTGCTATAACG 1190196 28 89.3 0 ...........C.C......T....... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 96.7 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TTGTCGATACTCATGGAGCAACCTTGGTTAAAAGGCTTAAGGGATTACACACAAGTAGGCTCTATTTCGCCCGTGCCGGAAAGCATCTTGGGTTATAGAACGGTTTCAAGAGTTCAGAAGAAAAGCCCTCAGAATATGCGTAAGCGATCCATTAAAAAAGGGTGGCTGTCGGCTGGAGAAGCCATTCACCGGATTCCAGATACGGCGCAATCTCTGCTGGCGTTGCCTTACTTGCAGCTAAGAAGCCTATCAAATAAAAACGTTATGCGGATATACATCAAACTGGGAGAAGTCAGCCAAACTCAAACGGCTGGAGAATTCTCTAGCTACGGGCTAAGCCGGACTGCCACCATTCCTTGGTTCTAATTTAAACCCTATTTTTTTCACTATATGCAAGTCATTGATTTTTAATGGCTTGCAAAACAACTTCAAAAAAGGGTTTTTCGCACTCATTTCTTACCCGCTCTTTAACAACCTACGTTCCCGCTCTATACTCTACC # Right flank : TGACTACTCTGCGCAGCATTATTAATTGTTGCTTACCAAGAGTATACAATCACATGTGACTAGGACAATTATGCGGTACTCTATTTACGATAGGTGTAATGTTTGTATTTATCAGTGCATCAATTCTCTTGTTTAACCAGATTGATGCACTTTTATTTGTCCTCAGGACAAATATCTTTGTTTGTCTGCAAGTTAACGTCAAATCCATAATAAGCCACATTTTTGTTATGGAATACCTTTGTGGACAAGCCCTTTTCATTAATCGATAAACCCACGTTTTTCGGTGCCCTCTTCTTACTTACCTTAGTTACGATTCCTCTTATCGCATTTCCTGCCGAAGGTGCCCATTGGATAGCGATAGCCAAATCCTTTATGACCGACAAGCTGGGCTTCCTGTACCTGACGCTGGGGATGACCGCATTCTTCTTTATGATTTATGTTGTGTTCAGCGACATGGGGCAAATCAAATTAGGTGACACAGATGAGAAACCCGAGTTTGC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : CTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1200141-1199333 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063199.1 Vibrio sp. SCSIO 43132 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1200140 28 100.0 32 ............................ TTTTTGATTTGCTACCGAAATAATGTTCATTT 1200080 28 100.0 32 ............................ TTGATTGAGTCGAACTCTCGCCAAAATAACGT 1200020 28 100.0 32 ............................ CACAATTACGCGGGGTTTGTGGCGGGCAAAAT 1199960 28 100.0 32 ............................ AACAAAGAAGAGAAAATAATGGATACTTTAGG 1199900 28 100.0 32 ............................ AATTTATCCAGACGCTCATTGGTCGCGCGCAT 1199840 28 100.0 32 ............................ CGTATCGAGCAGCTTTGGAACGCTGAACCAAA 1199780 28 100.0 32 ............................ TAATGCTTGTGTTGAGCTTAAGTGTTCCCCCG 1199720 28 100.0 32 ............................ ATGTATTTATTGGCTTCGCCATTGTCTGTATT 1199660 28 100.0 32 ............................ ATCAAGTTTCAGAGAACGTAGGGCGCAATGAG 1199600 28 100.0 32 ............................ CTAGAATCAAAAGTCCCCGTCCTTGGCGATAT 1199540 28 96.4 32 .............C.............. TGTTCGTGTTTTAAGATGAGCGAGCCGTAAAT 1199480 28 96.4 32 .............C.............. GGAGCGTGTGAACGAGTAACAGCAACACTTTC 1199420 28 96.4 32 .............C.............. ACCGATATTCGTGGGTAATGGTACCGCTTTGT 1199360 28 92.9 0 ...........C.C.............. | ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.7 32 CTTTACTGCCGTATAGGCAGCTTAGAAA # Left flank : GGATCAGAGCCAGTGCGAGTCACGCCAGCCACTGCAACCACCAGCAGCACGAATGCTAAAGCGACCGATGAAGCCGTCGCGAATTCTGCCGTCAAAGTGGAACAGAACAAAGTGACCTTGTCTGCTGAAGGCAAGGCTCTGCTGGCAGCATTACAACAAATCGAGAAAGAAGGCGTAGCTGTAGGCGATAAGAGCGTCGGTGATAAAGTCGAATCGTTCGCCCATGGCGCACTAGGGATGGATCACCCAGACAAGTTTAAAGAAGAAGACGATACCTCCTATTCCGCGGGGCAATATTTGTCCGCAGCGGCAACACTTGGCGGCATCATTGCGCTTTTGATTTAGCTTTTCGCCATAAACCTATAATCAAAACCCTATTTTTTAGTAATATTTTAACTTTTTGATTTTTAATAAGTTAATTAAATTCAAAAAAATAGGGTTTTTGCCGTAATCCTTGCATCACCCCTTTCCTATCAGTCGTTCCAGCGCTATGCTCTACC # Right flank : TACCGTTTATGAGCCGGATGCTCTAACCCACTTTGACTACCGTACAGGTAGCAGCCATCAACATGGCATTATGCAATCGATATCACCAATTCAACTTTAAAAGGACGGTAATATAGCTGCTTCAATAATGAGACAGAATCATTTAGCAAGAGAGAAAAGTGGCTGACGAATTCAAACCCAGTGAACTCAAAACAATACTGCACTCTAAACGCGCCAACCTCTATTACCTTCAGCATTGTCGGGTTCTCGTCAATGCGGGAAGGGTCGAATACGTGACAGATCAAGGGAAAGAAAGCCTTTACTGGAATATCCCCATTGCCAATACCACTTCTATCATGCTTGGTACGGGTACATCCATCACTCAAGCGGCGATGCGAGAGCTAGCAAAAGCAGGGGTTTTAGTCGGTTTTTGCGGCGGTGGCGGAACACCGCTGTTCTCTGCAAATGAAGTGCAGGTTGACGTATCTTGGCTACTCCCCCAATCGGAGTACAGACCCATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : CTTTACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTGTACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //