Array 1 3499683-3498925 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGTM01000001.1 Klebsiella pneumoniae strain MGH172 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3499682 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 3499621 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 3499560 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 3499499 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 3499438 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 3499377 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 3499316 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 3499255 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 3499194 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 3499133 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 3499072 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 3499011 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 3498953 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8596-6313 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGTM01000002.1 Klebsiella pneumoniae strain MGH172 scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8595 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 8534 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 8473 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 8412 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 8351 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 8290 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 8229 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 8168 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 8107 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 8046 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 7985 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 7924 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 7863 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 7802 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 7741 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 7680 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 7619 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 7558 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 7497 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 7436 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 7375 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 7314 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 7253 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 7192 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 7131 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 7070 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 7009 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 6948 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 6887 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 6826 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 6765 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 6704 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 6643 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 6582 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 6521 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 6460 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 6399 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 6341 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 38 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGTAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGAAATTTTGATTAGTTGAATCTGTGCCATT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12297-9342 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGTM01000002.1 Klebsiella pneumoniae strain MGH172 scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12296 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 12237 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 12176 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 12115 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 12054 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 11993 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 11932 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 11871 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 11810 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 11749 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 11688 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 11627 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 11566 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 11505 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 11444 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 11383 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 11322 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 11261 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 11200 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 11139 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 11078 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 11017 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 10956 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 10895 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 10834 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 10773 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 10712 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 10651 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 10590 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 10529 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 10468 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 10407 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 10346 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 10285 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 10224 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 10163 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 10102 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 10041 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 9980 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 9919 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 9858 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 9797 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 9736 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 9675 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 9614 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 9553 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 9492 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 9431 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 9370 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 49 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : GCAATCCCAGAGCGCGAATATCTTGGGCTCTCGTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //