Array 1 625879-627127 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCVG01000002.1 Escherichia coli strain VREC0212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 625879 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 625940 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 626001 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 626062 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 626123 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 626184 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 626245 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 626306 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 626367 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 626428 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 626489 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 626550 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 626611 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 626672 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 626733 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 626794 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 626855 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 626916 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 626977 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 627038 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 627099 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 652826-654380 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCVG01000002.1 Escherichia coli strain VREC0212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 652826 29 100.0 32 ............................. CAACTGGCGGAATACAGGACGGGTGGATATTC 652887 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 652948 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 653009 29 100.0 32 ............................. TGCGCGGAACGGAGATTGTAAATATCAAAATC 653070 29 100.0 32 ............................. ACACAGGCGCGAAAACAATCGAACGCGCTAAA 653131 29 100.0 32 ............................. GGAGGATGTTCGGTCCCGGAACTAAACCGGCA 653192 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 653253 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 653314 29 100.0 32 ............................. CGTGGAGGAGAGGGCGACGCGCTGGCAGACAC 653375 29 100.0 32 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 653436 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 653497 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 653558 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCT 653619 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 653680 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 653741 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 653803 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 653864 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 653925 29 96.6 32 ............T................ CAATTCATAAATTAATTTACTATTTTGAGTGC 653986 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 654047 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 654108 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 654169 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 654230 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 654291 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 654352 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //