Array 1 3756-4394 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCTU01000012.1 Escherichia coli strain VREC0069, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3756 29 100.0 32 ............................. AATGGCCGGGTGGTGATGGGTTCCCGTTCACT 3817 29 100.0 32 ............................. TGGCTGAGTACTTCGGCAAACGACACGGCGAT 3878 29 100.0 32 ............................. CGAGCGCAACACGGCCATATTATTACCCCATT 3939 29 100.0 32 ............................. CTTATAACCGGCGGCAAAAATCGTCGCGTTGG 4000 29 100.0 32 ............................. AGATTGGTTTTCCAGTCTTTGGCGGTTGGCAA 4061 29 93.1 32 .T..........C................ CTGTGCCGGTAGCCCCCTCCCTGTTCAGCCTC 4122 29 93.1 32 .T..........C................ TGTTTTAGAGATGTGTATTCAAAATCAGATAG 4183 29 100.0 32 ............................. AAATTGATCCCAGGGTGATTATCGTGGGGATC 4244 29 93.1 32 .T..........C................ ATTTCTTTAATTATTTAGCTGATGCTTTTAAA 4305 29 93.1 32 .T..........C................ GGTAAAAACACGGTCTGAACCGACATTCATGT 4366 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.2 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGTTGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 58842-60518 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCTU01000024.1 Escherichia coli strain VREC0069, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 58842 29 100.0 32 ............................. CTGGCAATGGATCGTATGAATCTTGCGATAGA 58903 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 58964 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 59025 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 59086 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 59147 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCGGCCTGTC 59208 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 59269 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 59330 29 100.0 32 ............................. GCGTCTCGAGCGCCGGACGATTCAAAACCAGC 59391 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 59452 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 59513 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 59574 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 59635 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 59696 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 59757 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 59818 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 59879 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 59941 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 60002 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 60063 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 60124 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 60185 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 60246 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 60307 29 96.6 32 ................A............ ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 60368 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 60429 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 60490 29 89.7 0 .A.......A..................A | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //