Array 1 153992-154561 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGSB01000004.1 Escherichia coli strain TUM18592, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 153992 28 100.0 32 ............................ AGCAGCTTTCCAGCGAGCGCGGTTAACTCACT 154052 28 100.0 32 ............................ AAAACGGCGGGTTTTTTACGCGTGTGGCTGCA 154112 28 100.0 32 ............................ GTTAACCGTTTCACACTTAACACTATGAACCG 154172 28 100.0 32 ............................ CTACAGCAACTGATGCAACGGTAAGCGCGATC 154232 28 100.0 32 ............................ AGCAGCGGTGGCGAACCGCGCGTTGTTGATTT 154292 28 100.0 32 ............................ AGAACTCGAAATTTATCGCGGGACTTTTCAGC 154352 28 100.0 32 ............................ AGGCTGCTGGCGCTCTCGTTGTTAACGGCAGC 154412 28 100.0 32 ............................ GTTCCACGCGGATATCTGTAATTTCCAGCAAA 154472 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 154532 28 85.7 0 ....................A...C.CT | T,C [154552,154556] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 163619-165688 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGSB01000004.1 Escherichia coli strain TUM18592, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 163619 28 100.0 32 ............................ TGAAAGTTGACGCCAGCGGCGACCCGCGTCAC 163679 28 100.0 32 ............................ AAGGCAAGTGATGGCGAAATTACCCGCGCAAT 163739 28 100.0 32 ............................ AAATTGGGGACACTTTCTTCTACCTCTTTTGT 163799 28 100.0 32 ............................ TCAATGCTGCTAAACGCGCACATGAAGAGTCA 163859 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 163919 28 100.0 32 ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA 163979 28 100.0 32 ............................ AGCCAAAATAATGCGTCGCTTTCTGACATTTT 164039 28 100.0 32 ............................ TCGAGCGTACCAGGTTTACTGTCGTCATATAC 164099 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 164159 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 164220 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 164280 28 100.0 32 ............................ GGGTTGCGCAATGGGCTGGCCGACGAACGCGG 164340 28 100.0 32 ............................ AGGTCGTAAACCCCATTTTCAAAACCAATCAG 164400 28 100.0 32 ............................ TGTGGCGCTGATGCGTCTGGGCGTCTTTGTAC 164460 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 164520 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 164580 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 164640 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 164700 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 164760 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 164820 28 100.0 32 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCCC 164880 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 164940 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 165000 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 165060 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 165120 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 165180 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 165240 28 100.0 32 ............................ AGTTCGCGGCAGACATACACGCCGGGAGTTTT 165300 28 100.0 33 ............................ GTTCGACGATTGAGTCCGCCGCTGTTGTTTGAT 165361 28 100.0 32 ............................ CGGCGGACCACTCATCATCGTATAAATCTTTC 165421 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 165481 28 100.0 32 ............................ GACGAATGCCGCACACCAGGGCGTCTCGTCGT 165541 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 165601 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 165661 27 92.9 0 .......................-C... | T [165681] ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //