Array 1 72865-71928 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKZV01000002.1 Thermogemmatispora aurantia strain A1-2 sequence02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 72864 37 100.0 44 ..................................... CTTTATATGAAGTCTACGCCACACTTTTTTCTCGTGTGGCGTGA 72783 37 100.0 35 ..................................... CTACCATCCGCGCGCGAATCTCCTCGCGCGTCGGT 72711 37 100.0 40 ..................................... CACCGGTTACAATGCCGGGCGCCAAAGCATCAACATGAAG 72634 37 100.0 36 ..................................... GGCAAGGGGTCCAACTGCATCAAGAAAGCCTGGTCA 72561 37 100.0 37 ..................................... TCGAAGCGTCTCATGGTACTCAGGTGATTGCTCTCGA 72487 37 100.0 33 ..................................... CTGGGTTCACCTCCTGGCCAGGCCAGGTCTTGC 72417 37 100.0 40 ..................................... TCGACGTAAAGCCAGCGCTGAGAGAGCGAGCACCAGGCAG 72340 37 100.0 42 ..................................... GGAAACTCCTTCTTCCAGAAGAAAAGGGATGGAGGAAACCGG 72261 37 100.0 37 ..................................... CCTGCCTGGAATGAAAGAGGGGCTGATCCTAAGAATG 72187 37 100.0 39 ..................................... GCCTCTGTCCAGACATTGGCTCGTCCCCCCCACCTTGCC 72111 37 100.0 39 ..................................... CTAAGTGGTGGTTCTGTCTCTGTCAGCCGGATGACACCG 72035 37 100.0 34 ..................................... TTGAGGAGCTGCGTCGGCGCCTGTGCCAGGTCGA 71964 37 94.6 0 ...........................A........G | ========== ====== ====== ====== ===================================== ============================================ ================== 13 37 99.6 38 GTCAGAATGCCTGTTTAGCCCGCTCTGGGATTGAAAC # Left flank : CTGTCTTCGGGGTGGCGTAGGCCCTCTTGCTGATGCAGCCTGCGGTGACCCAGCAACTGGCGGCGCTGGAGGCCACCGTGGGTGAGCCGCTCTTTCTGCGGCACCGCGGCAACAAGGAACTTTACAACCAGATTGTGCAGGCCAGGAGCGACCGCCCTTGCTACGCTGTGGAGTGCCGCGCGAATACTTTCAAGAACAGCTCCTGATGCTCCTGAACTCACTTCTGTATCGGATCTGGTTCATACTTTCTTCTTGCCATCGATAGTACTCTCACAGTAGATCAATATATAAATACCTCCTATGCATCTCACGCTGTTCGCTTCGAGGATCGCAGTGCCCGGGTTTTCATGCAGCGATCCTCGAATGGCTCCCCAGGCCGTGCCAGGGCCAGAGTGGCTGGCATCATGACCGCATAAAAGCGGTCACTGATGACCGTTTTTTTGGGATGCTCGAAAAGGCTTGACTGAGGCCGCCTGCAATGCTATTTTAGGAAGGGTACC # Right flank : GGGATTGAAAATTGAAACGCTAAAGACCTTCCAGCTCAAGCTGCATCTCTGCCAGACCCTGCTGAGCGGCGTAGCGGACCGTCAGGCCGCTGATGCGACAGGTCAGATTCTGGCCGCTGCCCGTAGGTGCCAGGCTATCGATCAGCGTCACTGCATCGAAGAGCTGTAGCGCTGGATTCAGCGGCACAGTGATGCGGTGGCGACTGGCGGCGCGCTGCTCCTGAGCCAGCAAGAAGGCCGCCTTCTGAGCGCATTGGCTGGTAGTGGTCAGCTTGTGGTCAATGTGGTAGCGCAGGCGCTCGCAGCCCACCTGCTGTACATGGAGATCGTCGTAGGCCTCGGCGGTCGTCAAAGCTTGAGGCGAACCACTGGCCGGTGGCCTGCCACTGACGATGATATGGTTGGCGCGCTCGTCGCTACTGCCGATACTGAGCAGCTCGATCTCGGGCTGGTAGGACCAGACAGGGGTCTCGCCGCTACTCAGCTCGCGGAAGCGCAGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAATGCCTGTTTAGCCCGCTCTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 2 764516-762999 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKZV01000002.1 Thermogemmatispora aurantia strain A1-2 sequence02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 764515 37 100.0 36 ..................................... CTTGTGTGGATTCTCACCTGGGCCGAGCGCACTTTC 764442 37 100.0 39 ..................................... TCCTTATCCTCCCGTGCCTTCCCCATCCCCTGGTGCCCG 764366 37 100.0 36 ..................................... GCAGGCTTGCCGTACCTCGGTGACATGTCCGCAGAG 764293 37 100.0 36 ..................................... ATCGATGAACTGAATGCGCTCATGCGTCGCCTGGAC 764220 37 100.0 35 ..................................... AGATAAGATGCTGCTTTATGCGCGTAAATATAAAC 764148 37 100.0 39 ..................................... TCGGCTGGCATTCGCGGCCCAACGGGGATGGTTCTATGA 764072 37 100.0 37 ..................................... TCGCTGACTCGTAGAGTTGCTCCAATCTCTCGTCTCG 763998 37 100.0 36 ..................................... CCTTCCAGTTGATCTGGAAGGAGACGAAGAGCTGAA 763925 37 100.0 36 ..................................... GATATGGCCACAGCAACAGCAGCCACAGGAGAAAGG 763852 37 100.0 40 ..................................... CAAGAGTGTGCGCGAGGGCGCGCGCGTACACCGGCCAGTG 763775 37 100.0 39 ..................................... CCAGATGTCGCTCCTGCTACGCCGACGGCTGCAGTCCGG 763699 37 100.0 37 ..................................... ACCTGAGTATGGAAGGGGGTCCCCAGATCAACCCCGT 763625 37 100.0 34 ..................................... GAAGCCGGGCCAGCTCGATTGCAAAGCGGCTTCC 763554 37 100.0 36 ..................................... CTCATCGCTGCCATTGAGAGTGGGCAAGGGGTCCAA 763481 37 100.0 39 ..................................... CAACTGGACAAAAAGGAGCCGGTCCAAAAATGGGTCCAG 763405 37 100.0 38 ..................................... TACGTTGACGGAGATGCGACAGACCACGTGTTTCCACC 763330 37 100.0 38 ..................................... TACGTTGACGGAGATGCGACAGACCACGTGTTTCCACC 763255 37 100.0 37 ..................................... ATGTCGAACGGGCGTCGCAAAATCTCGACGATCTCTT 763181 37 100.0 37 ..................................... CGTAATGCTGGAACATGAATTCTCCACGCGCTGCCAA 763107 37 100.0 35 ..................................... AATTGAACATAGCTCCGAAGCGCTGGCGGAAGCCG 763035 37 94.6 0 ..................................G.G | ========== ====== ====== ====== ===================================== ======================================== ================== 21 37 99.7 37 GTCAGAAAGCAGGACAAGCCCGATGTGGGATTGAAAC # Left flank : CCGGCGGAGTCGTGCATCATCTGTGGCCTCCTCCCGATCGATGCCGTAGTGCAGCCCCAGGCTCTCGAAAATCTGCTTGCGGGTGCAAGGCCCTTGTCGCAGCAGTGCCAGCAAGCGCAAAAGTCGCTCGAGCCGGAGGACGGCAAGCCTTTCCTCTGAGGAAAAAGGTTCAGCGCGTTGGAAACCGGCCATGCACTGCTTTCCCTCCATCAATGCAAGAGAGATGCCTTTTACCATAGAGTCTTGAGCGCCCGCTGTCAAGGTCCAGGCACCTCTGCTGTCGGGAAAAATATGCCGCTGTTGCCGCTGCTGCCGTTCGCTTCGAGCATCTCGGCTCCCGGCTTCCCACGCAGCGATGCTCGAAGGGCTTCCCAGGCCGTCGGAAGGCCAGAGTGGCTGGCATCATGACCGTGCAAATGCGGTCAGTAGTGACCGCTTTTTTGGGATGCTCGAAACAGCTTGACGGAAGTCGCTCCTGATGCTACGCTAAAGGGGGTGCT # Right flank : GGATTAGAAGGGGTTGAAGACGAGAGAAAGATGGTGATGGACCGTCTGGACCTGCAAGCAATCAGAAAGCAGGACAAGCCTGTCAACTTCCCTCACATCGGAGTCCCCCACCGGCGGACCTCTGGTTTCGTCGAATGCAAGTACTCCGTTCAGCATGCGCAAGACGGAGTAGAAGACTGGATAGAGTTTTTGACGCGGCTCTGACTTCCTTTCCTACATCATTAGAAGAAGCTCCCCGGCTCGACCAGCAGCCTTCCACATGGCGCTGCTCCTCAGAAGGAAGAGGCTACTCCCCATAAGGCAACCCAGCTGTGCTACAGGCGCCCTGCGCAGGAAAAATCTCACTCCCTCCACGAGGGAACCTCTCATCGACCAAAAGCAAGATCACGTCTTGCCTGCTTCCTCCCACCCTCAACCTGCTCCTCCTGCCTCAGTTCCCAGATTCCTGCTCTGCCTGCCTTCCCTGCGAAACAAGCTGCTCCGGGGCTACACCCAAAACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCAGGACAAGCCCGATGTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 3 780054-777459 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKZV01000002.1 Thermogemmatispora aurantia strain A1-2 sequence02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================ ================== 780053 37 100.0 39 ..................................... CTTCTTGAAAAGGCTGTCAGGGAATTGGAGCAAATTAGG 779977 37 100.0 36 ..................................... CATTGTTGAGGTTTATGCCGCGTCAGCAGAAGCAAG 779904 37 100.0 42 ..................................... CGACAGCACGCAGGAGTTGCCGGCAGAGCTGCCGCTCATACG 779825 37 100.0 37 ..................................... AGCTGGAAAAAATCAGGGAGGCTCTCCATGACGCAAG 779751 37 100.0 39 ..................................... ATTCTCGGCTGGTACCACCTCCGAGCGACGATTTCCTGG 779675 37 100.0 36 ..................................... CCTCAGTCAGCAGCATCTGCTCCATCTGGTCAGCGA 779602 37 100.0 35 ..................................... CAATCAGAAAGAGTGAGTCCATATAAATTGCCCAG 779530 37 100.0 38 ..................................... AGCCACGTCCATCCCGTCCTGCGGAGGGGACTGTCAGA 779455 37 100.0 39 ..................................... TATAATGCGGCTCGGTTGATCGGTCATGCGGAGAATCCA 779379 37 100.0 35 ..................................... ACAATCGATTTCATCCGCTCAGTGGGAGGGAGCAC 779307 37 100.0 35 ..................................... TCCTGGGCAAGTCGAACCACGTCCCGTGGCGCCGC 779235 37 100.0 40 ..................................... TCATACTGAAATGCTTTAATTGGTATTGATACATAGTACA 779158 37 100.0 38 ..................................... TTCTTGTTCTCAATGAGCAGGAGACCCTGCTCAATCTG 779083 37 100.0 34 ..................................... CTTCTTCGAAACAGCGCTCGCATGCAGGATTTTT 779012 37 100.0 36 ..................................... TTCTGGTGGACCAAGCGGGTCAATGTTTGGGATGTC 778939 37 100.0 35 ..................................... AAGGTCAACTGCTGCAGCGCTCCTGACAACGCATC 778867 37 100.0 37 ..................................... AAGAGGAACAGCGCGCTTTTGTCAAAGACCTCTTAAG 778793 37 100.0 39 ..................................... TTGACAAATTGCCGAATGATCTGAGCAAAAAGAGCAAGC 778717 37 100.0 36 ..................................... GTCATCGGCGCCGGCGGCCTCGAATGCGACGGATAT 778644 37 97.3 38 .........G........................... GCACAGTCTTCTAGAGAGATAGGAGGGACTAATTCCCC 778569 37 97.3 35 .........G........................... TTCAAATGGCCCCTGTGGCCAGCCAGGTTGTTCTT 778497 37 97.3 38 .........G........................... TTCATCTTCCTGACACCACCGTAGCCAGATCTGCGTCA 778422 37 97.3 38 .........G........................... AGGAGATTCTGGAGCTGCTGCCGGCCCCGACCCGCTGG 778347 37 97.3 38 .........G........................... CATACCCGGCGGTAATGACTCGATTGCCAGATCCGTGT 778272 37 97.3 35 .........G........................... TGTTCTTGAATTTTTCTAGCTATGATATATTTTGA 778200 37 94.6 36 .........G..........................C ACTTGCTAGAAGTTGCTGGCATCGTGCTGGCTCAAC 778127 37 97.3 36 .........G........................... TTCGATGCCCTGCATGCCAAGGCGTGCATCGACAAG 778054 37 97.3 36 .........G........................... TTCGATGCCCTGCATGCCAAGGCGTGCATCGACAAG 777981 37 94.6 36 .........G..........................C ACTTGCTAGAAGTTGCTGGCATCGTGCTGGCTCAAC 777908 37 97.3 38 .........G........................... TGGCTGAGCAATTCGTGGCTGATCATTTGCTGTGCCTG 777833 37 97.3 39 .........G........................... TTACCAGCAGGTGGGCATTGCGATCCCTGATGAAATAGC 777757 37 97.3 38 .........G........................... GTAACAGGGCTAGCTCTTGTCCAGCAATACCTTCGTTC 777682 37 97.3 37 .........G........................... TGGCTCAAGGAGGAGCCGCCTGCCGCTGCAAAAGTTG 777608 37 94.6 76 .........G........................G.. GAGGGATTGAAACCATCGGCACAAACCGGGCGCGCCCGGCAAGCCTGGCCTCGCTCTACGACGAGACCAGGCTTGC 777495 37 78.4 0 A......GGC....C.......C.A...........C | ========== ====== ====== ====== ===================================== ============================================================================ ================== 35 37 98.0 38 GTCAGAACCTCGCTTAAGCCCGTTGAGGGATTGAAAG # Left flank : GCGAGGCGGTCCCTCTTGCTGCCGCTGTTGCCGCTCCTGCTGTTCGCTTCGAGCATCTCGGCACCCGGCGTTCCACGCAGCGATGCTCGAAGGGCCTCACAAGCCACCGCAGGGCCACAGGGGCTGGCATCATTGCCGTACAAAAGCGGTCACTACTGACCGCTTTTTTGGGATGCTCGAAACGACTTGACGGAGGCCGCTCCTGATGCTACTCTAGAGAGGGGGC # Right flank : AGTGGAGAAAGGGCTGGTGTTTTCCTGGTTGGAAGAGGATACAGAGCAGTGGCCTGACCGATCGCCCCCTAGGAGAAGTAGAGGCGCTCTTCGCGTGGTGGCTCGCCCCCCACGGTGACAACGCGCTTCACACAGGCCTGGCAGAGAGGATAGATGCGGACACTATCCTCCCGCTCATTCAGGTGAGCTGCCAGGCGCGCACGGAGCAGCACAAGCTCTTTCCTGGTCAGGAAGCACTCGAATACCGAATACTGGGTCCATTTGCCAAAGCCACAGAGGAGCTTGTGTACACGAGCGCGGCGCCGATCATCAGCGATATCGTAGGCAATGACATAGCAGCAAGTATCATGGGGTCCCATACGGTTACCTCACCAGGAACGGCTGATAGTGCGTGATCTCCCCAGTCAGGTACTTGGCCAGCAGACGCGCCTGCAACTCAAGGCAGCGCATGTAACTCACGCGATAGCCGAACACGGGATGGGTAATTTCCTCGTGAAAGC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAACCTCGCTTAAGCCCGTTGAGGGATTGAAAG # Alternate repeat : GTCAGAACCGCGCTTAAGCCCGTTGAGGGATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 1 427960-427552 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKZV01000001.1 Thermogemmatispora aurantia strain A1-2 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 427959 38 100.0 36 ...................................... TCATAGGGATGACCAGGTACCCCACGGAAGCGCTCT 427885 38 100.0 36 ...................................... TGGTCGATCTTAATGGCAAGCGTCTGGTCATCGTCA 427811 38 100.0 36 ...................................... CTGACCGGCAAGAGCACCAGCCACAAGATCAATAGC 427737 38 100.0 37 ...................................... GGGGAAGAGGGGCCGAGGTGGAGAAGACGTGGAGTTT 427662 38 100.0 35 ...................................... TTGTTGTTCCATCCAGGCTGATGCCTCCTTTCTTG 427589 38 92.1 0 .......G.........................G...A | ========== ====== ====== ====== ====================================== ===================================== ================== 6 38 98.7 36 GTTGCAGAGGGGACGATCCGCACGAGGATACTGAAAGG # Left flank : CCTTTCTTTGGTGTTCCCCTCTCTCTGTTGGGCTTTGTTGGTGGTGATGGGCTGCTGCTACGATGCTGGCCGCTGCGGTGCTATGTGCTTTTCCCTGGCTGCTCTGCTGTGCAGCCACCGACCTGACCCTGCAGGGTTGTCTTCTGGTCGACAGGGAAGGACGGGAACAGGATTGAGCTGAGTCTGATCCCCCTCTGATGAGGCCCTTTTGAGAGCCTCTTTCGAAACTCTCCTCGGATCTGCCAGAAATGCAGTCAGATTCTGACCGCATTTGGCTGGTTGGCCGCATGTATTGCCTGTAAAATTGGATGATATATGCTGGTGCTTTCTCGAAACTCGCCCCTTGCGCGTTGCAAAAAACGAGTTTCGAGAAAGGTCGTAATCCGATAGATTTGTGGGCCGGGGGGCAGGGGAAAACGAGGCTCTCAGCGCCAAAAAATGGGGCCTCGATCGTTATAGTCTATGAAAGATGTATCCCGGGTCTGTTTCCGTTGGGCGCG # Right flank : AAGAAAAGGAGGATACTGAAAAGAGATAAAGAAAGTAAAAAGAGGCACAATATATAAAAAGAATAGCGTATTGCCCCGGGCATCGCCCCCCGACTAGCCCGGCGACAATACACTACATTCCTACAAAACGGCCCTTTCCTCCACTTTGGCGAATACTCACCCACCTCACTCCTTCACTCACACACCATCATCCCCCAAAAAAGAGAGCCGGAGCCGCGCCCCAGCTCGTCACCAGGCACGCGCTCCGACTCCCCAACGGACCAAGTACAGAGCGAAACTCGGATAGAGAGAGCTCGGGTACGTTAGGGAAATGGTATCTTGCTCAAACGCTGGCTCCTGACCCAACGCCCTAAGCGCGCCGCTCCCGCTGAGACTGAGGCTGATGAGGCCACCGCTCCCACGCTCAGAGGCCGCGTCTGCACCTGCTCCGCTCCTCGCTCGCCTTCCTCGCCTGCAGCGTCAGCCCCCAGTGCGCTCCCTCCTCTGATCATACCCTCCGC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGAGGGGACGATCCGCACGAGGATACTGAAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 2 653199-651374 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKZV01000001.1 Thermogemmatispora aurantia strain A1-2 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 653198 37 100.0 38 ..................................... TGACACATGAATAACAGAGTCATTCACGGATACAAACA 653123 37 100.0 38 ..................................... GCTCTCCCATTGCCAGCTATCGCTGTAGAGGATTTCAA 653048 37 100.0 39 ..................................... CCGTCGAGATAATGCACGTCGACGAATACGCTGCCGCTG 652972 37 100.0 38 ..................................... TGCTGTCGAGAACGTACAGCCGGCTTTCAGGAAAGAGC 652897 37 100.0 37 ..................................... CCTGAACCACCGGCTGAACCACCTGGGCACCTCCCTC 652823 37 100.0 36 ..................................... GTGTTTTTTCGTCAAATTGTGCGCCATATTCACGAG 652750 37 100.0 40 ..................................... TGGCCGTTGATTATGACGAATCGCTTTCCCTGCAGATCGA 652673 37 100.0 37 ..................................... ACATCGCATGGCCAAGACACAAGTTTCCTTCCTCTAC 652599 37 100.0 37 ..................................... ACATCGCATGGCCAAGACACAAGTTTCCTTCCTCTAC 652525 37 100.0 38 ..................................... TACGATCAGTGCTGCAGATAGTGGAGGATCTGGGTCTC 652450 37 100.0 42 ..................................... CAGATTCGTACCCTCCCCCTCCCAGGAGAGAAGAAATCCCAG 652371 37 100.0 35 ..................................... CTGCTCTCCATTGCCCAGGAAGGGCGCAAGTATGG 652299 37 100.0 39 ..................................... ATCGGTCAAGCACAAAACGCCGCACAGCCGATGTCGCTG 652223 37 100.0 35 ..................................... CTTCGGGATAGAGCAGCTTGACGAAATCAGGCTGC 652151 37 100.0 38 ..................................... CTTTGTGCAGCCTCATCATGACCAGCGCCCGCATTATC 652076 37 100.0 38 ..................................... TGCCGCCGGGTACCATCATATTCGGCAACCCGAATATC 652001 37 100.0 37 ..................................... TTCGGCAAAAATTCAAGAACGCCTTGAGCACCCGAGC 651927 37 100.0 38 ..................................... CGAGTGGATTCTCCTGGGGGTGACTCCTTTGCTGCAAG 651852 37 100.0 36 ..................................... TTCCGAGGTCGCCAGCAATCTCATCGAAGATCTGGT 651779 37 97.3 35 .........G........................... GCGCGGATGGCACGCGCCACACGCGGCTCCAGTGG 651707 37 97.3 37 .........G........................... CACCTTAGCGAGCAGCGACTCACCAAACCGGCTCACG 651633 37 97.3 38 .........G........................... AATTTCGGCCTGCCCCTGCAGCCGAGCAGTGGACCAAC 651558 37 97.3 39 .........G........................... ATCGTCTGGAAGGAGAGGGGAGCATTTGTCTCCTCCCGG 651482 37 97.3 35 .........G........................... TACTACGTAGAAAGTCAGGTAGAGATTGCATTACG 651410 37 97.3 0 .........G........................... | ========== ====== ====== ====== ===================================== ========================================== ================== 25 37 99.4 38 GTCAGACCACCGCAGAAGCCCGTTGAGGGATTGGAAC # Left flank : TTGCTCCTGCCTTGCTATCTTCTTTATCCCCCTTTCAGTATCCTCAAGCGGGTCGGGGTAGAGGCTCTCGACCTTTCTAGGGCTGCCACTGAGTTGACACCAGGCTGCGAGGCGCTCGCGCAGTCTTGGGCGTGAGAGATTGCCTGGAGACCGCAGGGGTCGTGATCGTGGGTCGAGCCAAGGGCGGGCGTGTCTCCAGATCGGCGAGGCGCTGCCCCATCGAGCTGCTCCATCTGCGTGCACTACTCTCTACTTTGGTGCCACTTTCACTACTGTCAACAGAAGCCAATATTACTGCTTGTACAACTAGTGCCGTTCGCTTCGAGCATCTCGGCTCCCGACTTTCCACGCAGCGATGCTCGAAAGGCTTTCCAGGCCGCTGGAAGGCCATAGTGGCTGGCATCATAGCCGCATAAAAGCGGTCACTAATGACCGATTTTTTGGGATGCTCGAAACGACTTGACGGAGGCCGCTCCAGATGCTACTCTAGAGAGGGTACT # Right flank : GCTGAGAGAGGCGATGAAGCGGTGGAGCGTGCTGGAAGAAGGGGAGAGAACTGTCGACTAAACTGTCACATGGGAGAGAAAAAAGAGCGAGGCCGCTTCTCAAGCGGCCTCGGAGTGGTGGAGATGGGGGAGAGTTGAACTCCCCGTCCAGGCAACCCTGTTAAAGGATATCCTACAGGCTTAGTCGGTGTATTGCTATGCGCAGAGGACTCCCACCGACAGGATTCCTCAGCGCTGGCCCTCTGGTCTTAGATGCCGGTTAGAGGGCGATCACCAGCACCGCAGCCCGTGTCGTCGGCGCCCACATCTGACCCCACAGGCGAAAGTCAGAGGGACGACGCTCGCCTAATTAAGCGGCGAGAGCGTAGGAGTAATTTGCCTTGTTGGCAGTTATTTTTTCGCCGGTTGTTTAACGAGAGAGCACACCGGCACCTCGGCCTGCAATCCTTTCAACAGCTTGTCTGTCGAAACCCGTCATCCCCATAGTATGGTCGATTGCG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGACCACCGCAGAAGCCCGTTGAGGGATTGGAAC # Alternate repeat : GTCAGACCAGCGCAGAAGCCCGTTGAGGGATTGGAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 3 998382-998636 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKZV01000001.1 Thermogemmatispora aurantia strain A1-2 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 998382 37 100.0 34 ..................................... CCGCTGAGTTCTTCTCATTTCCTCCCCATCCTCC 998453 37 100.0 36 ..................................... CAAATGGCATGATATGCTCTGAATATTCATAATACG 998526 37 100.0 37 ..................................... TGCCCGCTCCGGCTGCCCAGCCTGGGCCGCGGCCCAG 998600 37 94.6 0 ...........C...................C..... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 98.7 36 GTCAGAAGGCCGCTTCAGCCCGATTTGGGATTGAAAC # Left flank : CAGGGATGTCAGGAAGGGAAGGCATCCCTCCGCTCCCCACAGACGGCTTCCACGCGGTCGAAACAGAGCGACAAGAGAACGGGGGACTCGTCTCTCCCCGCTCGCTGTTCAGAAGGGAAAGAAGCCATGCTGTTCCCCTTTCTGCGTTGGTGGACCGCTCTCTCACTGGCTGATCACTCGTGGTGATCGTGACCTCCCCACCAACGACTGTTTTCCCGAACCCTGTCACCTCTGCCTTCTCATCCCGAGCCATCGCCGTCACCCCTTGCCGAGGCGAGGCGGTCCCTCTTGCTGCCGCTGTTGCCGCTCCTGCTGTTCGCTTCGAGCATCTCGGCACCCGGCGTTCCACGCAGCGATGCTCGAAGGGCCTCACAAGCCACCGCAGGGCCACAGGGGATGGCATCATGGCCGTACAAATGCGGTCTGTAGTGACCGCTTTTTTGGGATGCTCGAAACGACTTGACGGAGGCCGCTCCTGATGCTACCCTAGAGAGGGGGCT # Right flank : CCGGGCTTCCCCAACCTGCAGGACACGGGCTACGAGGTCAGCATGCCTGTGGCGCCCGCTCTCTGGGATTAAAATCCGATGGCGTCGACAGGGCGTGTGCTCGCAGTGGGGTCGGCGACAGGGGTCGCTCCCCATGTTGATCGGTCTGGTGCAATGGGCCAGAGGACGGCCCTGCAGAAGCGCCAGGTGGCTCGCCTGTCATCAGATAGTTCTCCTTTTCTTGCTGGCTTACTTGACAGTGGAGGAGCAGCTTTTCAGCCTGCCCGTCAGAAGGACCAGCGCAGACTCCTTGCCGCAGGTGGCTTCCTCCCCACAGTGGCAGCCTTCCCCCTCTCCATCTCATCGGTGAGGCTGGGCATCGGAGGGCCAGTCACGCTCATGGAGCAGTCTAGCGCACTGGACCCCCAGGACAACGGGAGTGCCCCTGGGAATCCCCTGGGAGCCAGACGGGAAGGATCAGGCAGAGGCCACAGCACGGGGTCCTGGTGATGAACCAGGTG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAGGCCGCTTCAGCCCGATTTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 1 525098-526023 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKZV01000003.1 Thermogemmatispora aurantia strain A1-2 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 525098 37 100.0 36 ..................................... TTTCCTCGAAAATATCCTTCTGCATCTCCTCGAGAT 525171 37 100.0 36 ..................................... TGCGTGCGCGCGCTTTCGCTGCTTTTGCTTGATTGA 525244 37 100.0 38 ..................................... TCCGTCCGCACACGCGGGTAGCCAACACGTACAGCAAC 525319 37 100.0 38 ..................................... TTTTGTCATTAGGACTGCCAGGAGGGACTATGTCCTCT 525394 37 100.0 38 ..................................... TTGAAAAAACTTCGTGATCATCCATTTTTCGACTATGT 525469 37 100.0 36 ..................................... CTGGCAGCGAGCCGTCCGGTCGACAGAAGATCGGAA 525542 37 100.0 37 ..................................... CTCATCAGAGTCCTCGGTCCACCGGGTCCACCGGCGA 525616 37 100.0 37 ..................................... CTCATCAGAGTCCTCGGTCCACCGGGTCCACCGGCGA 525690 37 100.0 36 ..................................... CCTTCGTACAAACCAGCACTGGGTGCCATTCAGGAA 525763 37 100.0 36 ..................................... CTTTTCTTGAAATTTCTCTGGCAATTGTCTCGAATT 525836 37 100.0 39 ..................................... TACGAGAAAAGGTGCATCAAAGCCAAACTCAGTATGCGG 525912 37 100.0 38 ..................................... CACCGAGATCATTGGCGAATGTCTCCGGCTCTGCGGCG 525987 37 75.7 0 C.......C...C.T......G...G..AT......A | ========== ====== ====== ====== ===================================== ======================================= ================== 13 37 98.1 37 GTCTGAAGTAGCTCCCCTGCCCGTCTGAGATTGAAAG # Left flank : TCATCTATGCATCTGTACAGCAGCTATAGAGAGTGTTCAAGGTTTGTTATCGCGCACGCACAGCTCTGTCGTTGCTGAGACGGAGGCGCGGACCTGCCGTCGGTGGGGGAAGCAGCTCACGCGCCGGAACCAGCGGCAGATCTTGATTGATAGCTCCAGCGTCGTTAGAGGCTCTGCTGCGCTGCAGGAGCCTATCGCAGATCAGTCCACCAGCCAACAGGTCGACAGGCAGGTTTCTCAGACTCAGGCAGTTATGCCTATTTTTATTGATAATATTAGATAACATATATTTTGCATTTTTTACCCGATATACTCGTCGCTTCGAGGATCTCGGCACCCGACTTCTCACGCAGCGATCCTCGAATGGCTTCAGAAGTGCTCGGAGTGGCAAAGTGCCTGGCATCATTACCGTTCTAGACCGGTCACTAGTGACCGTTTTTTTGGGATCATCGAATCTGCTTGACGGAGGCTGCTCCAGATGCTATCTTAGAAGGGGTACC # Right flank : AGCGAGAGAGCATGGTGCTGCTGTGGCCTGCTCTCCAAAGGAAGATCCTATGAAGCCAGCCGCTGCCTGCTTCGTCTGCCAGAAGGTACGAGGCAAGATTGCTATTCCTGGAGGACTGATCTATCGAGATGAGTTAGTACAGGCAACGCATCTGTTTCCCAACCAGCAAGGATCGGTCTATCTGGGCTACCTGATGATTGAGCCGCTACGTCACGCGCCGGAGGTGGCGGATCTGACTGTGGAGGAGGCCCAGGCAATCGGACTGCTGATGAGCAGGCTTAGCCGGGCTCTTAAGGAGGTACTCAAGGCGGAGCATGTATATGTTTTTGTGCTGGGTGATCATGTGCCACATCTGCATCTGCATCTAGTGGCTCGTCATCCTGGGGCCCCCCAGCAATACTGGGGTGTGCACGTCACGGAATGGCCAGAGGCTCCACGAGGAGGAGAGGCGGAGATCAGCACGCTCACTGCACGCCTGCGTGCTTTCCTTGCTCGTTGAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAGTAGCTCCCCTGCCCGTCTGAGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : NA // Array 2 708283-709149 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKZV01000003.1 Thermogemmatispora aurantia strain A1-2 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 708283 37 100.0 37 ..................................... TTGGGGATATCGACGGGCAATCCGATTCTTCCGCGAT 708357 37 100.0 43 ..................................... TCCAGTACAGGAGGAATGGTCCCAGCCTTGGGACCATTCCATC 708437 37 100.0 37 ..................................... GAGATCTTGAGAGAATCAAAGAGTGACCGCTTTTGCT 708511 37 100.0 41 ..................................... TGCGCGTAAATAAACGCAACAGTAGCATCAGTCCTATCAAC 708589 37 100.0 39 ..................................... TCGTCCAGTCTTTGGCGGCAGATCGGCCCCCCCAATAGC 708665 37 100.0 40 ..................................... GTTGATCATGCGCGCGATAGTGGCTGTCCGGTCGATTGTG 708742 37 100.0 39 ..................................... TTATGGAAGGAGGGAGGGCTGGATGTCTCTCTATACAGT 708818 37 100.0 38 ..................................... AATTCGGGTATGTTTTCGACTCTGAGTGGAATGCCTGT 708893 37 100.0 39 ..................................... TCAGAAAGAGCCTTGATGAGTTCTGGCGACATGGACCTC 708969 37 100.0 35 ..................................... TTCCCCGGACCAATGCCGATGCCGCAGATCTCGAA 709041 36 94.6 36 ........................-....G....... TCCTCCAGGCTCGTGGCGAGGGCATTCACAATCTCG 709113 36 75.7 0 .......G..ACGC..CT....-.............T | G [709143] ========== ====== ====== ====== ===================================== =========================================== ================== 12 37 97.5 39 GTCAGAATGCTTATTTAGCCCGCTCTGGGATTGAAAC # Left flank : TGCCGTGCGCTGGGGGCTTCGTGTCCGTTGCCGAGGGAGGGCGAGAGTGCGACGAGGTCGTCGTTGGCAGTGGGCAGCTTGACCTCAACGCCGACGGCGGGTCTGGCCGAAGGCGTCGAGGTCTGAATCTCTCCCCCTTGTGTGCCCAGGCCAGACCAGGATCGGGCTTCGTAGGCCGGCGTCCTGGCGTGCGGGCTGGCGCTGGAGGCCGGGACTGGCCAGTCGTTGGGCGCGAGTCGGCGTAGCTCCTCTCCGTTGAAGCTGCTCCTTCGGCTGCTGGCGAGGGCGAACGTGCCTCTTTTGCCGCTCATGCTGTTCGCTTCGAGGATCGCAGTGCCCGGGTTTTCATGCAGCGATGCTCGAATGGCTTGGCAGGCCGCGTCAGGGCCAGAGTGGCTGGCATCATGACCGCGCAACAGCGGTCACTGATGACCGTTTTTTTGGGATGCTCGAAAAGGCTTGACTGAGGCCGCCTGCGATGCTATTCTAGAGAGGGTACC # Right flank : TGTCTCAGACCCTACGAGCGAGATGTAAGGGGTGAACACGTTACCCGCCTGCGATGGGACGGGAAGCGCTCGACTACACCTCAGTACCTTAGCCCGTAGTCGAGGTCTGCCCGCCTTCTGTCCCCACCCGGCGACGAAGGACAAAAAAAAGGCCGCAGGAGCGCCATACAGCGTCAGCTAAACGCTCTCTGTGCCTCTTGGGGGATGGAAGAAGAAAAAAAGAAGAGAGAAATCAGCACGGCAGAACAAGGCAGGCCAGACTGAACCTGGCCTGCCCCCTTCGCCTTCCTCCGCACCTGACACCTACTCAACCCGCTGCTCGTTCGCCAGCTTCCCGAAGCGCTCAGCCTTCACTCCACTTACCGGCTCACTGGCCCACCAATAAATAGCTCAGGGAAAAGCTCCCCAAAGAAGGCCAGCCCCGCCCGCTCTGGCACAATCGTCGGTACCAGGAGGCTGCGATCCAGATACTTGTTTCCCCGCTCACACGAGGTCTCGGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAATGCTTATTTAGCCCGCTCTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 724390-726806 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKZV01000003.1 Thermogemmatispora aurantia strain A1-2 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 724390 37 94.6 36 ..........C.G........................ TCGTCCAGGACGCCGATTCAGTCATTCTTCTCCACA 724463 37 94.6 35 ..........C.G........................ ACCGGGCTTACCAACTCTACCAGCAATGCCTCTAC 724535 37 94.6 43 ..........C.G........................ ATAATGGCAGTCTGATCGTATGGGGATTCTAAGAGAAGGTCAG 724615 37 100.0 37 ..................................... ACGAAGAAATACGGCGTTGGCGTTGGCGTTGCCGACA 724689 37 100.0 39 ..................................... TGGCGAGTTTTCGCTTGCGTATACGCCAGATGCGATTGT 724765 37 100.0 40 ..................................... CGAAGAGGAGCAAATTGCTTTGAAATAGTCGATGGCGCTT 724842 37 100.0 37 ..................................... ACAACCAACCAGATGAGTATTGCCCCGACCAAGATGA 724916 37 100.0 37 ..................................... CTTGTTGATAGGCCCGCAGGAGCACGCGGGCACTGAT 724990 37 100.0 39 ..................................... ATCTTTCTTATAAACTTGTTACACAAAAAACACCGTTCA 725066 37 100.0 37 ..................................... TGGCTATTCTGCCCGCTCCCAAGAGTCAACTGCCCCG 725140 37 100.0 37 ..................................... TGTGTGGCGAGCCGGCTCCTTAAGAGCCAGCTCCTCC 725214 37 100.0 38 ..................................... TATGCCGGTAATTACTACTTAGCAATGCATGCTGCAAA 725289 37 97.3 36 .........................G........... TTCGCGAAGAGCATCTAGCTCGATCTCCCATGCGAT 725362 37 89.2 37 ..........C.GG...........G........... TCATTGTTGGGCTCCTTTCTCCTGCTCCTCCTGGACA 725436 37 97.3 36 .........................G........... GATGACGATCCACTTGGGCTGGTTGGCGTCGATGAA 725509 37 100.0 36 ..................................... ATCCTTGTCCTGATGGTCACGCGCGTCCCGCTCTTG 725582 37 100.0 37 ..................................... ATTGTTGTGGAATTGTGTACGTGTCTGGGTTTGTGCG 725656 37 100.0 37 ..................................... AGAAACAACGATCTCTTCGACAGTCTGTGGGGTTAAT 725730 37 100.0 37 ..................................... AGAAACAACGATCTCTTCGACAGTCTGTGGGGTTAAT 725804 37 100.0 37 ..................................... GAGGTCCTTGAGCAGCTAGCAGAGATTGCGGCTAGGG 725878 37 100.0 38 ..................................... TCCGACGCTTGCGCGCGAGTGTCGCCCGGCGTTCGCGT 725953 37 100.0 37 ..................................... TAAAACGTTGGGGATACCGAAGAGCAATCCGGTTCGT 726027 37 100.0 37 ..................................... TGTGTGGCGAGCCGGCTCCTTAAGAGCCAGCTCCTCC 726101 37 97.3 38 .........................G........... TTTTCTTTCATCCACTCTTTCGCCCGACAAGGCTCCCT 726176 37 97.3 38 .........................G........... TATGCCGGTAATTACTACTTAGCAATGCATGCTGCAAA 726251 37 97.3 36 .........................G........... GGAGGCTCCTTTGGCGGCCCTCCCGCCGGAACTGTC 726324 37 97.3 35 .........................G........... CCCGTCGGCTAGCCGGCGCAAGGCCGACAGGCCGC 726396 37 97.3 36 .........................G........... TTCGCGAAGAGCATCTAGCTCGATCTCCCATGCGAT 726469 37 86.5 36 ..........C.GG..C........G........... ACTCGCCCGCCTCCGCCCGGCACAAGCCCAGACGAA 726542 37 86.5 35 ..........C.GG..C........G........... GACGACGTTGACGGTCCGTAGCAGTACTCCAGTGC 726614 37 86.5 47 .......C....GG..C........G........... CGAAGCTGCCGATTGTGTCCAGCAGCACCAGCTGTGAGGGGTGTTGT 726698 36 75.7 37 .....-G..GC.G.C.C............G...G... CAATCGATCTCGTCCTCATCCCTGAAGAGCCGATCGC 726771 36 81.1 0 ............GC..CT....-......G......G | ========== ====== ====== ====== ===================================== =============================================== ================== 33 37 96.1 37 GTCAGAATGCTTATTTAGCCCGCTCTGGGATTGAAAC # Left flank : CTGGTTTTGTGATGCGCATTTTCTGGACTACTTATATATTTCTCATCATTTCTATCATTTATACAAATGATCATTTTTTACAGCTCATGCTGTTCGCTTCGAGGATCGCAGTGCCCGGGTTTTCATGCAGCGATGCTCGAATGGCTTGGCAGGCCGCGTCAGGGCCAGAGTGGCTGGCATCATGACCGCGCAACAGCGGTCACTGATGACCGTTTTTTTGGGATGCTCGAAAAGGCTTGACTGAGGCCGCCTGCGATGCTATTCTAGAGAGGGTACCGTCAGAATGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCAGAGTGGCTGGCATCATGACCGCGCAACAGCGGTCACTGATGACCGTTTTTTTGGGATGCTCGAAAAGGCTTGACTGAGGCCGCCTGCGATGCTATTCTAGAGAGGGTACC # Right flank : GCACTCGGGACCCTGGCTTATGTAAGGAACAAAATGTCTCCTTTGCCCGCCTGGGATGGGCACCGCCTGACTCCACCTCAGAATCGTTAGCCGCAACCCAGGTTAGGAAGCCCGCCTCATCCGCTCCAGGCTTGTAGCCCTTTGCCCCCACACCCGGCCTTCTCCCCCCACCCCTTGACATCCCTCAATCATTCAATTATTCTATTGAATATCAATCTATCGAAGAACGCAGAGCCTGGCGTAGCCAAACCGGTGACGAGACAGACAAACAGACAGAGAGAGCAGGGTCAGGCGCCGAGCCAGGCCCACCAACAACGGTGCGCCGTCCGTCTCAGCCAGCAGACAAGAGCACCCAGAATCAGACAGGAGTATACACAAGAAGAGCGTAAAGTAGGAAAGAGCAAAACAGAGCAGGACAGAGGAAAAAAGAAGAGGAGAGCAGAGATCGGCGTGGCATACCAGCACCCTGAAAGCAAGCGAGCCTTTAAAAACCAGCTCTA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAATGCTTATTTAGCCCGCTCTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 459-1887 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKZV01000008.1 Thermogemmatispora aurantia strain A1-2 sequence08, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 459 37 100.0 35 ..................................... GGTATTTGGAGAAAGCAGCACCGCAGGCGCCTGGA 531 37 100.0 36 ..................................... ATGAAGCAGGGATGTAAAGGCACTGGCATCACGAAA 604 37 100.0 38 ..................................... TTATGCCGGGTACCTGGCTGGCTCAGACGAGTGGGTGT 679 37 100.0 36 ..................................... GGATTAATCGTAAGCACTAATGTATAGTCTGATTGA 752 37 100.0 37 ..................................... GGTGGATTCAACAAGCCATCAAAAGATGTCTCTCTTC 826 37 97.3 37 ...................A................. GACGTTTCAGAGGTATTTCAGACATCTAGTGAAGACG 900 37 100.0 37 ..................................... GACGGCTGACCGCTCTCATTTCTGTTCTCAGTATAGC 974 37 100.0 36 ..................................... GCGCCAAAGACGTGTATACGCAGTGGCACAAAAATG 1047 37 100.0 35 ..................................... TTTCTCTGGCGCTTGTCTGTTCCATATGTGCAGCA 1119 37 100.0 35 ..................................... CAAGGGAATAGGAACAGGACTCTTTTGAGGAGAGA 1191 37 100.0 37 ..................................... ACAATAGTCGCAGGACGCCGGCGGATCAAGCGCTTCA 1265 37 100.0 36 ..................................... GAGCGCAAAAAGCGCTCAAAAGCACAACCGAACAAC 1338 37 100.0 36 ..................................... GGGCAACGGGAGCGATTCACCGGATCGATATCGCAA 1411 37 100.0 35 ..................................... ATGTTCGCAGACTTGCAGGGGGCGTATCTCTATTA 1483 37 100.0 37 ..................................... GGTATACCTGATGCATCTTGACAGTGGCCCAGGCCAG 1557 37 100.0 36 ..................................... GGGCAACGGGAGCGATTCACCGGATCGATATCGCAA 1630 37 100.0 36 ..................................... ACTTAAAGGAAGCATCTACTTGCTGGCTGCAGAAAT 1703 37 97.3 37 ....................T................ GGTTGTAGCCAGCGAGTGTGGCAGGCTTCACGCGAGT C [1725] 1778 37 94.6 35 ..................T.T................ GTCTTGCTCGTATTCCAGATAGTACAGGTTGTGAC C [1800] 1851 37 91.9 0 A................................G..T | ========== ====== ====== ====== ===================================== ====================================== ================== 20 37 99.1 36 GTTGCAGAGGGGACGATCCGCACGAGGATACTGAAAG # Left flank : GCCGGCGCTTCTCCCTTTCCGATAGACATAGTCGGTATCTATCACATAGCAGAACAGGGCGTCTCGGGCTTAAGCTGGCGGGAGAGGGTTGAGGGGGAGGCCGAAGGCTCCTTCCTCCACCTTCAAAGTTGCAGGCCGGGCCGAAACCCCTGGCGATGAGGGTCGTATGAGCGATCGATTCGAAACTCTCCGGAGCCAGCAACTAAATGCGGTCAGATTCTGACCGCATTACCATGAAAGTGTGCATGTTTTACTCTTTCTATGATGAAGATAAGGCTTATGCGCTCTCGAAACTCGCCCCTTGCGGCTTGCAAAAAACGAGTTTCGAGAAATATCGTAAGGCGATGTATTTTGAGAGGGGGAGGGAGAGAAAAACGAGCCTCTCAGATGCCAAAAACGGGGCCTCAATCGTTGTAGTCTATGGAAGAAGTATCCCGGGTTCGCTTTCGTTGGGCGCGG # Right flank : TGAGGTATGCTGAACAGCTGATTAAAGAGGATGCTCAGAGAAGGGCGAGAGATCACTGACTGCACATAGCCATTGGCTAAAGCACAGATGTCTGTAATGGTGGATAGCACTGATCCCTGGCTGGCCGGCAGACGAGAGGCCAGCCATCAGCTTCCCTTAGCGCTCGCAGCGCCCGCCGGCCAAATAGTTTACGCTTCAAACTCCTCAAGAAGGTCCTCGCGTCCCTGCTCTCGCGCAAAATCTACCAGCTCCGGCCAATCCGGCACCGGCACCGCCAGACGCTTACAAATATGCCCCATTACCTGAAGCAAGGACCCGCGGAAAAGCGGCTGTCTCCGACGCTGCTCGCGCTCAACAAAGAGCAGCGTCTGCTCCAGAGCACTACGGCGCCGCAGCTGCTCGTCCTTACACCAGAGCTGGAAAAAATACCCATTCTCCTGACGCACATTGCCCACATCGCTCGGGCGCAAAGGCTGCCGCTCGCCTGTGCTGGCCGCCTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGAGGGGACGATCCGCACGAGGATACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 141023-141359 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKZV01000008.1 Thermogemmatispora aurantia strain A1-2 sequence08, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 141023 37 100.0 42 ..................................... ACCTATCTGCACTTTTGCTATCACTTTGCCGCTTTTTGACGA 141102 37 100.0 37 ..................................... CTTGATCTATTTCATGTATGAAGAGACTATCTGTATG 141176 37 97.3 36 .......G............................. TTGAAGGAAGAGTGCCGCAAAGGAGGGGCGTGGGTT 141249 37 94.6 37 ....................C.C.............. GGGCAGGCCGGATTATCTACCAACGATAATTCGGCAA 141323 37 89.2 0 ....................AAG.............C | ========== ====== ====== ====== ===================================== ========================================== ================== 5 37 96.2 38 GTTGCAGAGGGGACGATCCGGGAGAGGATACTGAAAG # Left flank : GGCCTCTCCGGCGGAGCCCCCACTCCGCCGGAGCCGGTGGGTGCAGCCTTCCAGTAACCAGAAGGATTACTTATATTGTACGTGATGCTCCAAATATATGTTTGTCGATATATGGCCGCTGCTGATAGTGCTGCTCGCTGGCTGACAACCTGGGAGGCACTGGTTGTGGAAGGGTGCACTGGGGCAATCTTCGGCTCATGTGGCCCTTGTGCGGGGCCGCTTCGAAACCCGGCGAGTGCTCCCGGGAAATGCGGTCAGATTCTGACCGCATTGACCTCTGGACGTGGAGCTTCTGCCTGTGGTATACTCGAAAATGCGATGCTGCCTCTTCGAAACTCGCCCCTTGCGGTTTGCAGAGGACGAGTTTCGAGAAAGGTCGTGGGACGATATGTTCTGCGCGCGGGGGAAGGAGGGAAACGAGCCTCTCAGACGCCAAAAATGGGGCCTCAATCGTTCGTGGATGGTGAAGCACTATCCCTGACCTCTTTCTGCCGCCCGCG # Right flank : CGCGATACGTGGTATACTACAAGATAGTGAGAAGTGAGAGGCAATACTGATTTGACTGGCACACGCGCGGATCGTTGTCCGCTCCTGACCGCCTGGCCGCTCCCGTGGCCATAACCAGGACTGGGCCAGACGACGCTACACTGCCCTGCCTTGCTCTGGCCAATAGCCCAGGCTCCCGGCTGCTCCATCCTACACACTCGCGCAACTGAAACGACAGCTGAGCAGCTCAGCCAGCAGCCACCAGGAGAGGAGACGATGGCGAACCAGGCTCTGCCCCTCTCGTTCGCCGGCTAACTGCCTCGGGCAGCGCCAGCCAGCCGCCTCTGTCTGCCTGCCTCTCTGTCTCTCTATCTATCTCTGTCTATCTATCTGGCTGTGCTCGTATGCGAGGCCGGGGAGGGCTTTCGTCTATGACACGCGATCAGGGGCCTGGCGAGGATGGGCGGCAACAGGAGGGAACAGGCAGCCGCATCGGCAATTATCGCTTGCTGCGCCGCCTC # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGAGGGGACGATCCGGGAGAGGATACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 202205-201049 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKZV01000004.1 Thermogemmatispora aurantia strain A1-2 sequence04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 202204 37 100.0 39 ..................................... AGGAGGAAAGAACCATGTGGCAACGTCAGGACCACGTGG 202128 37 100.0 36 ..................................... TGGCCGGCAACCTCCACGGAGGCGTACGGGGACGGA 202055 37 100.0 35 ..................................... CCCAGATCGGCATTTCCGACACGTGCTCCCTCAGC 201983 37 100.0 38 ..................................... CACGCAAAGCCAGCGTCAAGTCAGCTGTCAGAGCGAGC 201908 37 100.0 39 ..................................... CCGGCGATTCTTCATTGTGTACCTCCTGTTCCATACTAG 201832 37 100.0 36 ..................................... AAGACGAATTCCTCTAGCGCGTCGTCCGGCAAGCGG 201759 37 100.0 35 ..................................... CTTGTGACCGGCTTCTCTGAAAGCCGGTTTTTGGT 201687 37 100.0 43 ..................................... TCCTGGGCGGCCTGCTGCCGGGTCCACTCCAGGAGCGCGCGCC 201607 37 100.0 37 ..................................... CAGGCCCCTGGGGAGAGCGTCCGGCAGATCGCTCAAA 201533 37 100.0 37 ..................................... CAGGCCCCTGGGGAGAGCGTCCGGCAGATCGCTCAAA 201459 37 100.0 38 ..................................... CATCATTACGAGCGCGCGGGCGATCATGGCATATTATG 201384 37 100.0 38 ..................................... AATCTCGGTCGGATCTCCTGCCTCCACCTCTTCTCCCT 201309 37 100.0 40 ..................................... GCTATGGTCTCTACCTGGTGAACCTGATCAAGGCGACTGA 201232 37 100.0 36 ..................................... TCGCGTGCCATCCGCGCCGCGCTCCGGCAAAAGCAC 201159 37 97.3 37 ..............................C...... TATGTAAGCGGCGGGAAGGACACAACGTCGCAGCAGA 201085 37 83.8 0 .....C....C...........G..T....C.G.... | ========== ====== ====== ====== ===================================== =========================================== ================== 16 37 98.8 38 GTCAGAAAGCTGCTTTAGCCCGTTTAGGGATTAGAAC # Left flank : CGCCGGACGGTGCGGCGGCTCGCTCGCTAGTGCTGCTTCTGCGCTGGCCGTGTGAGCCTCGGAGAGCAGGGCAGGAGCGACCCATCCACCGTCTACGGCCTACGGCGGCAGTCGTTGCGGCTTCCTCCCCTTGCTGACCGCTCGCTCTCGCTCACTGAATTAGCCGCTTCCATTCACTTGCTTCGCCCTCTTCAGCACAGGGCACTGACCTGCCAGCACTGCAGGGTCGAGCCATCTTGGACTCACGAGCTAAAAATATCCTTTGCTCTCCTAGAGAGAGAAATATTCCTCAAGTCATTGTTGCCGTTGGTGCTCGTCGCTTCGAGCATCTCGGCTCCGGCTTTTCCACGCAGCGATCCTCGAATGGCTTTTCAGGCGCCTCCAGGGCCATTATGGCTGGCATCATTACCGCAAAAAAGCGGTCACTGATGACCGCTTTTTTGGGATGCTCGAAAAAGCTTGACAGAGGCCGCTCCAGATGCTACATTAGAGAGGGTGCT # Right flank : ACCAAAAAAAAGCCACGCTCATGGGAGCGTGGCTTTTCCCTTAGCACTTCCAGCGAGGGCGAACAGCAGCGGCCTCGCTCAGCCTGCCGTCACCAAGGAGACCAGAGGGCCTGCCTGGAAGTTGAGATCCAGCATCAGCCTCTGGCTTCCCCTCCCTTCGGCCTGGCATCCCAGGCAGGCCCCATCTTCATTGCAGAGCTGCTTGCCTCGCCCGGCCTGGTCTAGAGAGTGCGCCCGCGCCCGCGTCCCGGCTGGTTCAGCAACAACCGCAGGCGCGCCACTTCCGGCGCACTGCCAAACGGCGAAGCCGCCAGCTGCTCCACGAGCCGGCGCGCCCGGTCCAGATTCACCTGACTACGGATCGCGTGCGCCACAGGTACCGCCTCCAGGCCCAGCGCCGCCGCCTGCTCATACTCGCCCAGCCGCGCATAGGCCTCCGCCGCCAACAGCTCTGCATAGACATTGGCGCGCGTCATACCGCTCAACTGGCGCGTTGGCAG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCTGCTTTAGCCCGTTTAGGGATTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 394318-395397 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKZV01000004.1 Thermogemmatispora aurantia strain A1-2 sequence04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 394318 37 100.0 38 ..................................... GAACAGGCAATAATGCGATGCCTGGCCAATGGTGTTCC 394393 37 100.0 38 ..................................... GCTCCCCTCACCCTCACGCGGGCGCGCCGGATTTCCGG 394468 37 97.3 37 ........A............................ AGTCACGGCCTCGACGACGACTCTCCTGCTTTTTAAG 394542 37 100.0 39 ..................................... GAAAACATCTTGAGGTCAGCCGCGTTTTTGGTATACTGA 394618 37 100.0 37 ..................................... GCCTCACGCAGCACACGATTGCACGCGCGCAATCCAC 394692 37 100.0 35 ..................................... TTGACGGCGGCAAGACCTGGCAGCCGGCGGCAATA 394764 37 100.0 37 ..................................... GCCTCACGCAGCACACGATTGCACGCGCGCAATCCAC 394838 37 100.0 35 ..................................... CACACCGCTCCTTGAGCGGCTGGCGGACGAGCTTA 394910 37 100.0 38 ..................................... GTTACATTTACACCAGCGCAAAGGGCCAAAGGGCCAAA 394985 37 100.0 39 ..................................... CGCTTCCCCACATCAGCAGGGAGATCAGGGCAAACAAGA 395061 37 97.3 37 .............A....................... GCAGCGGTAACTCTGTGCCAGGTATTCCAGATCTGAC 395135 37 97.3 37 .............A....................... TAGTGTTGGTAGGAAATGCTGTCGGTCAAAATATCAC 395209 37 97.3 38 .............A....................... CCACGAAATTGCGAGATCTTGCGCGTGATCTTGGGATC 395284 37 97.3 40 .............A....................... CGTTCCGGTTGCCAGCGCAGGGTCGACGTCCGGGCACTGA 395361 37 94.6 0 ...................C................C | ========== ====== ====== ====== ===================================== ======================================== ================== 15 37 98.7 38 GTTGCAGGGGAGTCGATCCGCACGAGGATACTGAAAG # Left flank : CCGCTGTAGCTGAGAGGATAGGCCCGGTGTCAAGGCAAGGGGGATTACGGTGGATGCACCTCTGATGCTGTTTGCCGTTGATGGCTGGACTGACTGGGCGGGGGCAGATGAGAGCGGATAGCCTGGCTCTCTGCTGCTCCCGCCTTCATTGTGACTGACTGGCTGAACTGACTGGGAGAGGGTCGAGGGTGGGCGTGAAAAGGCCCTTTTGAGGGGCTGATTCGAAACTCTCCGGGCTCTCCCCGGAAATGCGGTCAGATTCTGACCGCATTTCCCTGGAAGCATGCATCTTTTGCTGCTTTTATCATTGAAAGTATGTTGATGCTCTCTCGAAACTCGCCCCTTGCGGCTTGCAAAAAACGAGTTTCGAGAAAGGTCGTGATACGATAGATTTTGGCAGGCGGGAGGAGAAGAAAATGAGGCTCTCAGAAGCCAAAAACGGGGCCTCGATCGTTATAGAATAGGTGAGAAGTATCCCTAATGCTCCTCCGCTGCCTGCG # Right flank : CACAAGGGTACTGAAAGAAAGCATGAAAAAAACGGCGCCCGCAAGTCAATCCCACGAGCGCCGTTAGCCGTTTGCGGTCACAGCCTACCTGGAGCCGGACATGGCACTATGAACCTCCTGCGCCACTCCCGGCAGATCGTGACGCAGCTCGTAGTCACTTACCAGACAAACCCTCGGTCCAAGCTCCTGCAAGGGATGTCCGGTTTGCTTATAGTCTTGCTCAACAGGATAAGTACCGACAGCGAGCAGGTTGCCATCCTCGTCCTTCGCAAGCAACGGCACTAACTGACCCGCCAGCCAGCCCGGCTGATGACAGTCGTAGCCCTGCAGCGTCAGAAACTGAGCCAGGCCCTCAAGCTGTCGCCTCTGCTCCTCCAGGGAGAAGGCCGCCGGCGCTCGCTGCTCGACAATCGCCTGCAGCAGGCGCCGGCCAAGATGACGGTCGAGGCGATAGTGCAGCATGCGGTTGCCATAGTTGCGCAAACAACGATAACAGGACT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGGGGAGTCGATCCGCACGAGGATACTGAAAG # Alternate repeat : GTTGCAGGGGAGTAGATCCGCACGAGGATACTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.40,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 406168-408190 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKZV01000004.1 Thermogemmatispora aurantia strain A1-2 sequence04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 406168 37 100.0 38 ..................................... ATTCGAAACATCCTCTAGTCGCGCAATGGCATTACGGT 406243 37 100.0 36 ..................................... TTGCCAGGCCGCATCGATCAGCGCGTTCACCTCGGC 406316 37 100.0 38 ..................................... TATGGCTATGACAGTGTGACGGACCTGCCCTTGTCTGT 406391 37 100.0 35 ..................................... GGATTGCTGAAAGATGTTACAGCTTTCCGAAAACG 406463 37 100.0 35 ..................................... GCAATTTCGCCTGTGGTAGCGGATCAGATGCCGTT 406535 37 100.0 38 ..................................... ACGAATGCAAACGGTGACCGGAGTGGCCTGTAAGTTGA 406610 37 100.0 37 ..................................... ATTTAATGCCCCCTTCTCACGGTAAATCTCTGGATAA 406684 37 100.0 35 ..................................... CCTCTGGGAGAATCGGCTCAAACCGCTCGAACCAA 406756 37 100.0 36 ..................................... TCGATCGTTTCGTTCGGATTGGCAAACCGCTTCGTC 406829 37 100.0 35 ..................................... AACGAGCACGACCGGGCCGCTGATTGTCGGTTGCT 406901 37 100.0 36 ..................................... AGGCGGGAGATTGGACGTATCCGGGGGAAAATTCCT 406974 37 100.0 35 ..................................... AACGAGCACGACCGGGCCGCTGATTGTCGGTTGCT 407046 37 100.0 38 ..................................... GCGGCATCCGCGCGCATATTGCGGTATACACGCGCTGC 407121 37 100.0 36 ..................................... TCACCCCACTGATCGGGGGCTGTCTGATCATTCTTG 407194 37 100.0 36 ..................................... ACTTTTGAGATGATATTTGCCCCATCGTCCAGTACC 407267 37 100.0 34 ..................................... CCTTTGAATTTCCAGATCTGGCCGAGGCTGAACA 407338 37 97.3 37 ....T................................ CGCACGAATTGCATCGACTAGCGGATCAGAAGCCGGA 407412 37 100.0 37 ..................................... GGCCGGAGCTGCTCACCGTTTGCCACGTAGCGCCGTT 407486 37 100.0 39 ..................................... ACGATGGGAATCGGACACACATGCATTGGAAACGGTTTT 407562 37 100.0 40 ..................................... GGCAAAGATGGAAGATCGGAACAGACGAATTACACGCTGA 407639 37 100.0 39 ..................................... GTTGCACATGCTGATAGTAATTCTCGTTACTTTCGCGAA 407715 37 100.0 36 ..................................... GCCCGCCGGGCCACGTCAGCCGGTCCCCGGGCCGCG 407788 37 100.0 36 ..................................... TCCTCTTCTGCCCGCCGGTTTTTCCGGCTCTTCTGG 407861 37 100.0 35 ..................................... GTTCATGCGCATAGTAAGCGTTCTTCTCACCATGC 407933 37 100.0 36 ..................................... GGATTGACGCGACGCATGCGCTGGATGAGCAGCCGC 408006 37 100.0 36 ..................................... CCACCAGCGGCCCAGCCAGAAGAGCCAGAAGAGAAG 408079 37 100.0 38 ..................................... GAGAATTTCCCGGATGGTCATATGGAGCTGATCGCAGA 408154 37 97.3 0 ........................T............ | ========== ====== ====== ====== ===================================== ======================================== ================== 28 37 99.8 37 GTGGCAGGGGTCTCGATCCGCTTGAGGATACTGAAAG # Left flank : GGCATCCGACGGCACGCATGCGTCTGCTCCAGATGCTTTTTCATGTCTACGGCGTTGATGAGGTGCAAAGAGCGCTGGCTCATCAGGTGTGATCTGCATTGAGGAGCGCCTGTTTGCAGCGCGGGCCGACGGCTGGTCCGCGAGCTTTTTGTTTTTGGGGAGGAGAGAAGAGAGGGAGGAAAGGGAGCCTGGCCAAAAAATGGCCCATTTGAGAGGCCGATTCGAAACTCTCCCGCGGGTGCCCCCCAATCCGGTCAGATTCTGGCCACTTTTGGCCGGAATCTCGCACCTTTTGCTGTTTTTATAACTGAACATATATTGGTGCTTTCTCGAAACTCGCCCCTTGCGGCTTGCAAAAAACGAGGTTCGAGAAAGGTCGTGATACGATAGATGTTGGTAGCTGGGGAAGGGGAAAAACGAGGCGTTCAGATGCCAAAAATGGGGCCTCGATCGTTATAGAATAAGTGAGAAGTATCCCCGATGCTCTTCCGCCGGCTGCG # Right flank : GAAGGAGAGGAGGAGGGGAGGAAAAGCGTCCAGCAATAAAACATGAGCGCCGGGCATGCCACCCGGCGCTCACTCTGCTTCTCTGCTCTCCTTACTCAGCAGATGGCAACGAGCAAAAGGAAAAGATCCATCCTCCATACTCAGGCAGAAGAAGAGCGCAACCTCAAGCCAGGTGCCACCTCGCCCAACACAGCATTCAAACGCTGCAAGGCCTCCCCCGTCACACGGCTGGCCGGCTCAACCTCGATCCCAACCTGAAGACGCAGAGTAAGATTGTAGTCCCCACAGATCTTAAACAGCTCGCCAACTACCTCAGCCAAATTCTGAAGCTCGCCGCTCTCAAGCGTCGCCTCAGCGCGCAGCGGCAACACATAAGCCGCGGGCTGCTCACGCGCGGCGCTCACACCTGCCGCCCCCATGAGCGTGCTCTGCAGGCCAGCCACCGCTACCGGCTCCTGGCGCGTCACCACAATCTTGACCGCCCGCGCCCCCGCATAGTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGGGGTCTCGATCCGCTTGAGGATACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 455265-454780 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKZV01000004.1 Thermogemmatispora aurantia strain A1-2 sequence04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 455264 37 100.0 38 ..................................... CACGCCGCCACTGCGTCGCCGGCAATAGTCGGACGGCA 455189 37 100.0 36 ..................................... GTCAGTGAGCTTTTAGAGCGCATGTCATCTGAGGAG 455116 37 97.3 37 .............................A....... AGAATCAAAGGCGAATACGATAGCACGGGCCAAAAGA 455042 37 97.3 41 .............................A....... ATACGATCCGCTACCAGGCACCGAATTTCTTCGCACACTGA 454964 37 97.3 36 .............................A....... TCACCAGTAAGTGACCCGCCGACGCTTGCCGCCAAT 454891 37 100.0 38 ..................................... GCGGTAAACGGAATGGTACCGGTCTTGTTACGCTACAG 454816 37 89.2 0 ......A...C.........T...G............ | ========== ====== ====== ====== ===================================== ========================================= ================== 7 37 97.3 38 GTGGCAGGGGTCTCGATCCGCTTGTGGATTCTGAAAG # Left flank : TCTGGACCTGGTAGCCGGCGCGGCTGAGCGCCGCGCGCAGCACCGTCCGCCAGACCGCGAGGATGGCTTTCCTTGCCTCCTCATTTTGCGGCTCCTCGTTCCCAGGATGTACACGAGCGCACGGGCAGGGTCAGGCCCGCGAGCTTTTTTGTTTTTGGGGAGGAGAGAAGAGAGGGAGGAAAGGGAGCCTGGCCAAAAAATGGCCCCTCTGAGAGGCCGATTCGAAACTCGCCGCGGCTATCACCCCAATGCGGTCAGAATCTGACCGCTTTTGGCCAGAATCGCACATCTTCTGCTGCTTTTCTGATAAGAAATCTGTTGGTGCTTTCTCGAAACTCGCCCCTTGCGGCTTGCAAACAACGAGTTTCGAGAAAGGTCGTGATACGATAGATGTTGGTAGCTGGGGAAGGGGAAAAACGAGGCGCTCAGATGCCAAAAATGGGGCCTCGATCGTTCTAGAATAAGTGAGAAGTATCCCCAATGCTCTTCCGCCGGCTGCG # Right flank : GTCGTCGATACCGCAAAATAAGCAATAAAAACGCGAAGGAAGTTTTCCCTCCTCCGCGCCTGCAGTCAACCACTCACAACAAGGAGCCTGCCGCCCAGGCAGCCGAGCCAGGACCTGGTCAGTCGCGACATCACACCCCAACCACAACCCAGCAACCTCAGCCCACCGCCCGCCTGAGTAGCTCCCTGATCCGCTCCTCCTCAGACGGCCCCAGCGCCGTCAGCGCATAGGCCGTCGGCCACATCTGTCCCTCATCCAGATGAGCCACATCGTTGAAACCCAGCGTCGCATAGCGCGTCTTGAACTTCTGCGCCGGCTGGAAAAAGCAGACGATCTTGCCATCCCGCGCATAAGCCGGCATCCCATACCACGTACGCGGCGCCAGCTCCGGTACACACTCCTTCACCAGCTCGTGCAAGCGCAGTGCCAGACTGCGATCCGGCTCGCTCAGCTCGGCAATCTTCGCCAGTACCTCCTGCTCGCCCTGCTCCCGATCCTGA # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGGGGTCTCGATCCGCTTGTGGATTCTGAAAG # Alternate repeat : GTGGCAGGGGTCTCGATCCGCTTGTGGATACTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 5 553313-553641 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKZV01000004.1 Thermogemmatispora aurantia strain A1-2 sequence04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 553313 37 100.0 37 ..................................... GTTCTTGGAGCGCCAGGGAGCGGCAAAACGACTTTTG 553387 37 100.0 35 ..................................... ATCATCTGGGTGGCCGGGAATCTCCAGGGGGTCAA 553459 37 100.0 36 ..................................... GTCGGCCAACTGCGGCCCACTCGTCGGCCCTTCCGG 553532 37 100.0 36 ..................................... GTCGGCCAACTGCGGCCCACTCGTCGGCCCTTCCGG 553605 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 100.0 36 GTCAGAAGCAGCGAAGAAGCCCGTCTGGGATTGAAAC # Left flank : ACGCTCTCCCGCATGGCTGAGACCTCCAGGCTCCCTGAGTCGCTCAGGCTGCTCCCAGGCGTTCTCGCCCCGCCGGGAACGCTGCACCCTGTCAGGACAGGTAGAGAGGAGAGGCGGCGCTCGCCTGTCTGCCGGGAGGAACGAGCCAGCCCCAACCAGAGCACTCCCACTCGCGCCGGGGCCTGCCCCTTCCAGGGAGCTGAGGCGGGTGGACTGCTCAGCGGCATCTCCCGCGGGTGAGCGGTGCCATGCTGCGGCCCTCCATGCTGCTCTTGCTGCAAGGAATAGTTCTTACTGCTCTCGCTGCCCAGGCTCGTCACTTCGAGCATCTCGGCACCCGGCGTTCCACGCAGCGATGCTCGAAGGGCCTCACCAGCCGCTGCAGGGCCTCAGCGGCTGGTATCATGACCGTACAACAGCGGTCACTGCTGACTGCTTTTTTGGGATGCTCGAAACGGCTTGACGGAGACGGCTCCTGATGCTATCCTGGAGGAGGGGCC # Right flank : CAGCTGCCTTGGCCTGGCGGGCACTGAGGGAGGGGAGAGGGGTCACCCAGACAGGACCTGGTGTTTCAGCAGCCAGCCAGCGCTGCACTCGCTGCTCGATCGGTCCGCTCGGGGCACCGCGTTGGTCGGGTGCCAGTGCGAGGCTGCAGGCCAATGAGATGCTGGCTGGCGCTGCAGTGCAGGGGGGCCAGCAGGGAGGGAGCCGGAGAGGAGAGTGGGTGCCCCATGAGGTGAGGTGAGCCAGGAGGAGACGGGACAGTCGAGCGGGATCTGGCTCCCTCTCCAGCAGGCGTGGGCATCACGGGCATCAGCAGCCCCCCTCTCTCTGGACCAGGAGAGGAGCAGCGAGCAGCCATCGGGGGCGGTATGCTGGGGGCGGTGTCTGGCCGTCAAGTCAATGGTCACCCACGGACGGCGCCGTCCATGCCTCCCGTTGCTGCTGAATGGCGCGGAACGAGGCACGGTCTGCTCCGGCTGGAAGCCACCTCTGGGGGATTTGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAGCAGCGAAGAAGCCCGTCTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : NA // Array 6 574687-575103 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKZV01000004.1 Thermogemmatispora aurantia strain A1-2 sequence04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 574687 37 100.0 38 ..................................... CGCGCTGCTGGCTGATCTGCTCTTGCGCGCAGCGCAGC 574762 37 100.0 37 ..................................... GCACTGACGCAACCCACGCTTGACCGTCACGGCCTAG 574836 37 100.0 40 ..................................... CTTCTGGCAGCCAGTCAATACCTTGCTGGATCAGGACCAA 574913 37 100.0 41 ..................................... CGAAAGGGCCAGGGTGAGAGCAATTTCGACAGGGACTGCGA 574991 37 100.0 39 ..................................... GACGACTTCTTCCGCTCGTCCTCAAGGCCCTCGAATTCC 575067 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ========================================= ================== 6 37 99.5 39 GTCCGAACGCCGCCTAAGCCCGATGAGGGATTGAAAC # Left flank : CCGTCGGAACGTCACGTAAGCCCGATGAGGGATTGGAAAGACGAGTCGGGTCAGCTCGCCGATCGTTCCCTCCCCCACGGAGGCCTCGCTGACGTTGAACCGCCGCGCCAACAGGCCTACAGCGGCCCGACCGCGCCCTTCATCAGCAGCCTCCGCGCTCTCTCATCGGCTGATCACCCGTGGTGATCGTGACCTCCCCACGCCCAACTGCCTTCCCGAACCCTGTCACCTCTCCCTTCCCATCCCGAGCCACCGCCGTCAACCCGTCCCGAGGCGAGGCGGCCCCTCGTGCTGCTGCTCTTGCCGCTGTTGCCGTTCGCTTCGAGCATCCCGGCACCCGGCTTCCCATGCAGCGATGCTCGAAGGGCCTCACCAGCCACCGCAGGGCCACAGGAGCTGGCATCATGACCGTGTAACAGCGGTCAGCGGTGACCGCTTTTTTGGGATGCTCGAAACGGCTTGACGGACGCCGCTCCTGATGCTACCCTAGAGAGGGGGCG # Right flank : GCACCCAGGGCAGTGGGACACGGAAGGAGAAGGAGACAGACCCCGCCGAGTCACGGACCAGCCAGCCCCCCTCTTCCCACCTCAGCCGCCGGAACCCACGGATCTGCTCCTCGCGCTCCTCGGTCAATTCCCAGGGCAACTCCTTGAGCGAGAGCACGTGCTTGCGAAAGAGCGGTCGATGCAGGAGGGGATCGAGTTTGAGTATTCGGCGCTCCGCGCAGTCTGCTGTCGGCTCTAGCGTCAGATACCCCTCCGCATCCGGCTGATCGCTCCGGCTCCAGCCCGTCTCTTCCAGAGAGCGCAACTCCCCTTCCTCTGTCACTACCATGCCCCGGATATACTGCACCTGGTAGAGCGTCACGGTCTGGTCCGCTGTCTCCTGCACCCAGGGGCAGGCACGCGCCAGGACCTCTGCCTGCCGCTCTGCCAGTTCGGCACGGGCCACCTCGTCTTCGGCCTTCAGTGCCTGCCACCGGGCATGTTCCCGGCGCGACGCTTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAACGCCGCCTAAGCCCGATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 7 588662-587065 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKZV01000004.1 Thermogemmatispora aurantia strain A1-2 sequence04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 588661 37 97.3 35 .............G....................... CTCGCTATGCTGGATGATGTTGTCCTATTGTTCCG 588589 37 97.3 35 .............G....................... ATCGGAGGCGTAGATGCTGCGCCTTCCTTTCCTCC 588517 37 97.3 39 .............G....................... GCGGCATGAGCGGCGACATGCTCACCCTCGGCCTTTCGA 588441 37 97.3 41 .............G....................... CTGAGGTAGGATTGAAGCCGGGAGACTTAGCCGTCTCCTAC 588363 37 97.3 38 .............G....................... CTCCGATCTTTATTGAGCAGGAGCCAGGCAGTGCTGGA 588288 37 97.3 38 .............G....................... CAGGCTGGATGATCTGCCCGGGCAATAGAGGCCAATCC 588213 37 97.3 39 .............G....................... GCAAGAAGGCCAGTGGGCTTCAATGGCTCATGCTCCTTC 588137 37 100.0 35 ..................................... TCGCTAAATTTCTGAGAAGCGCCTCTACTTCGCGA 588065 37 100.0 37 ..................................... ACAGCCATGACGACAAGAAAGCCGTATTCTGAGCTTG 587991 37 100.0 37 ..................................... CGACGTCGAGCCGATCTTGCACGGGGATCGGCATGAT 587917 37 100.0 36 ..................................... CCTCAGCCCTTTCAGCCGGCGGCGGCGGCCCCCATG 587844 37 100.0 37 ..................................... CCAGCGGTCCAGCTGGCGGATGAGATCGTCCGCCAGC 587770 37 100.0 38 ..................................... ACCGGCGATGGCGGCGGCTGCTGAATCGCTCTCCTTTC 587695 37 100.0 37 ..................................... GGCGCTCACCATTGATGAGGAAGTGGCAACTGTGCTG 587621 37 100.0 38 ..................................... CAGGCAGATGCGAGCGCGAAATGAGGAAGTGCTTCTGA 587546 37 100.0 36 ..................................... ACATGGAGACAACGCCTCCAGCGGGACCCAGGCCGC 587473 37 100.0 35 ..................................... GGCGGGCGTCCTCTAGCTGACGTACTAGACTCAGC 587401 37 100.0 37 ..................................... AACCTTATAATATGATGTTTCCCTGATTGTATCCAAA 587327 37 100.0 41 ..................................... CCAAAGCTGGTGATGGGATTGTCATTGGCATCCAGCGCAGA 587249 37 94.6 38 .................................G..C CGCGGGACCTGCCTTCATGGACTTGCGGGGATCTGCCC 587174 36 86.5 36 ...-...A..............A..T..........C AGATTAATGATCAGATATTCATGAGTCTGAAAGAGG T [587163] 587101 36 75.7 0 ...G....-.............A..T.....C.GCGC | T [587087] ========== ====== ====== ====== ===================================== ========================================= ================== 22 37 97.2 37 GTCAGAACCGCGCTTAAGCCCGTTGAGGGATTGAAAG # Left flank : GCTGCTGCTCATTGAGCCGCGCCTCCACTGTCGTCACCCGGGCTTCCAGTGCCCCGAGCCGGTGCCCCTGATCCCGCACCTCGGCCACCAACTGCTGCAGCAGCCCGATGATATCCGTGAGCTGCCCGCTCACCTTCGCCTCAAAGGCGGCAAAGCGCTGCTCCAGTGATCCGTTCTCCATCAGGCTCTCCTCATACGAAGGTGCATAGCTGCGTCTGAATACCCTGGCCTTTACCATACCATCCCGCATGGCCGTCGTCAACCCGTCCCGAGGCAAGATGCTCCCTCGTGCTGCCGCTGGTGCCGCTCGTGCCGTTCGCTTCGAGCATCCCGGCTCCCGGCTTCCCACGCAGCGATGCTCGAAGGGCCTCACAAGCTGTCGCAGGGCCACAGGGGCTGGCATCATGGCCGCGTAATAGCGGTCAGCGATGACCGCTTTTTTGGGATGCTCGAAACGACTTGACGGAGGCCGCTCCTGATGCTACTCTAGAGAGGGGGCT # Right flank : AGCGATCACGAGCTGGCCCTCGCCCTCCGCAGGCCAGGACCAGGCTCCTCCTCGTATTCAATCCCCTCCTGAACATTGCTGCCTCTCCCTTCCTCTCCCGAGCCATCGTGGTCAACCCTTCCCAAGGCAAGGTGCGCCCTCTTGCTGCCGCTGGTGCCGCTCGTGCCGTTCGCTTCGAGCATCCCGGCTCCCGGCTTCCCACGCAGCGATGCTCGAAGGGCCTCACAAGCCACCGCAGGGCCACAGGGGCTGGCATCATGACCATACAAATGAGGTCACTACTGACCGCTGTTGTGGGATGCTCGAAAAAGCTTGACGGACGCCGCTCCTGATGCTACCCTAGAAAGGGGGCTGTCGAAACGCTGCTCTAGCCCGATTAGGGATTGGAACGAGCGGTTCGGCGTGCACCTGGTCGTGCTCGCCGTCGTCGAAACGCTGCTCTAGCCCGATTAGGGATTGGAACCCGCGTCTAGAGCGTCGCCAGGGCGCACGCAGTCGAG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAACCGCGCTTAAGCCCGTTGAGGGATTGAAAG # Alternate repeat : GTCAGAACCGCGCGTAAGCCCGTTGAGGGATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 8 594428-593054 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKZV01000004.1 Thermogemmatispora aurantia strain A1-2 sequence04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 594427 37 100.0 41 ..................................... ATCCACATAAGGACGTACTAAATATAAGATATCGTCTTTAA 594349 37 100.0 37 ..................................... CCCAGATTGAGGCAAGCCGGCTCAGATCAATCGCCCA 594275 37 100.0 33 ..................................... AGCTTGGGGGCAGCCATGCCCAAGGCAATTGAA 594205 37 100.0 41 ..................................... CGGATGGAGTGCGCAAGCAGCGAGATGGGGGCAGCAACGTG 594127 37 100.0 36 ..................................... GTGGGCTTTCTGGAGGAGACCCTTGATCTCCTCCCA 594054 37 100.0 38 ..................................... CCTCTGCGGCAGAATACGGCAGCCGCCCCGCCGGCTTT 593979 37 100.0 36 ..................................... AATGGCGTGCCCTTCCCCTTGGGGCCCGGCTCTCCC 593906 37 100.0 36 ..................................... ATCTCGTGCAGAAGGCTACGTTATCTCGTGCCTTCG 593833 37 100.0 36 ..................................... AGCGCAGTTACATGAGTTTGCGCGCCCCTCGGTAGA 593760 37 100.0 37 ..................................... TCTCGGTTGTTAGTGCAGATCCGTGAGCAAGACCAGG 593686 37 100.0 37 ..................................... TGACCGCAGATAGCCTGCGTGCAATGCGCGGCAAGAC 593612 37 100.0 40 ..................................... TCTCCAGCCGTTTCCATTCCGGGGCCGGCGCCGCCGTCGA 593535 37 100.0 35 ..................................... AACTGCTCAGCAACTGGCGCTTGTCAAGCGCAAGA 593463 37 100.0 41 ..................................... CATTGGGAGAGCGTTTCTCTACCTTGCGCTCAGCATCGAAG 593385 37 91.9 37 ........G....C.C..................... CGGATGACAATATCATGGGGAGTCAGATTGACCAGTT 593311 37 86.5 36 ........G....C.C......C.C............ ATGCCACTGAGGGCCTCAAAGGCCCGGAGGAGCCAC 593238 37 83.8 38 ...C....G....C.C......C.C............ CAAGGGCTGGCACGATCAGCCGGCGATGACAGCGCTGC 593163 37 91.9 36 ........G.T..T....................... ATGATATGGTTTATGCACAAGCACGTGCACTGGTAC 593090 37 83.8 0 ........G.T..T........C.C...........T | ========== ====== ====== ====== ===================================== ========================================= ================== 19 37 96.7 37 GTCGGAACACCGCGTAAGCCCGATGTGGGATTGAAAG # Left flank : CTGCTCTAGTCGATTCAGGCGCACCTGGACCTGCGCGACCTCTCCACTCAGCGTGTCGAGACGCTGCTCGATCCGCTCTATCCGCTCCTTGAGGGCATCCAAATCCATCCGCAGGATGCCATAGAGCATGGTCGTATCCTTCGCCAGGTTCCGGTAGACAAACTCCAGCTCGCTGACGCGCCGCTCCAGGTCGGCAATCCGCTGCTCGCTCCATCAGACCCTCCTGAACACTGCTGCCTCTCCCTTACCATCCCCCGCAGTCGCTGTCAAGCGCTGCTCACGAGACCCATTCTGCCGCTCTTGCCGCTCGTGCCGTTCGCTTCGAGCATCTCGGCTCCCGCCATGCCACGCAGCGATGCTCGAAGGGCCTCACAAGCTGCCGCAGGGCCACAAGGGCTGGCATCATGACCGCATGAAAGCGGTCAGCAGTGACCGCTTTTTTGGGATGCTCGAAACAGCTTGACGGACGCCGCTCCTGATGCTACCCTAGAGAGGGGACT # Right flank : CGCTCTGGGATTGAAATAAAGCAGGCCATTCGTTCCATTCCTGCTCTCCCCTGCTCGGGGACGGACCCCTTCCCTCTGCGTTCCCGTTCCCTTCCCAGGATGTTCCCCTCTCGTTCCCGCGTGGTTCCCGGGTCGCGCGGGTATGCTTGCAGTGTTGCGAATGTGTTGCGGCCTCGGGAAGGCGAAGCGCTGCCGCCGGCGTTTCCCCCTGATCCCAGAGCACTCTCCCACCGAGGGCAGGAACAGACGATGCCCCTGGCGCTGTGCCTGGCCTGACCTGGCTCGCAAGGAGGGACCGCTCCGCTGGAACGCCGCACCGCACCAGCCTGACATGGACAGCCGCAGCCGGCCTGCGCTGGTTGAGCCCCGCTCTCGCCAGGTCGGTGACCCGCTCGCTCGCTGTCCAGGGATGCCAGGAACGCATCCTTTCGCGCGCTCCAGACGGCTTCACCGCGGTCTAAACAGAGCGAGAGAAGAGAACGGGGGACTCGTCCCCTCCC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAACACCGCGTAAGCCCGATGTGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA //