Array 1 79237-79804 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEDZV010000001.1 Hafnia alvei strain FDAARGOS_950 tig00000002_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 79237 28 100.0 32 ............................ AACATATCGCCCCACCATGTAACCACTCTGTG 79297 28 100.0 32 ............................ GTAATACGCTCCCAGAAGAATGACAGCGCCAC 79357 28 100.0 32 ............................ ACATAAAGCGCTTGCAGCTTTGTTTTTTGATA 79417 28 100.0 32 ............................ AGAAGGTAAATTAACGATCAGACGGTCACCGC 79477 28 100.0 32 ............................ GTCACGCGGTTATCACTACGCTGTCATTGAAA 79537 28 100.0 32 ............................ ATGAAAAATGGTCAACGCTTCTGACGTCGGAA 79597 28 100.0 32 ............................ TCCATATTTGGGATACCGTGTAGCCACTTCTG 79657 28 100.0 32 ............................ TTACTGAGCTTACCCTTGCGTCATAAATGTAT 79717 28 100.0 32 ............................ TTTTATGTATGCGAACATCACACTGCCAATCA 79777 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGATTAAGGTAATGCGTTATGGTGAAAAAAAGCCCCGAGCGGGCGTTGGGCTGCTCAGGGCTGATGTATTGTAGATAATAGCAAATTAACCATGCGTAGCAGATCTCATGCTTTTAACATCAGATCTCCAAGGTTATGGCCAGCTAACTCACCGTTACCGTTAAAACGATATTCAAACATGGCAGAAGCCCGTTTGCGTTGGGGTGACTAGCGCACATCGCAGCATGGCCTTCGATGCCGCCGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCGTTCTGGAAGCGAGAAGTCGCAGAGCAAGGCGATCGCTGGGTTGATGCCCACAACAGCAACCACCAAGCGGCAAAACGCTGGTAACCCCTTTTAACCCTTTTTTTGCCTTCATGCTAACTCATTGATTTTTAGTCCCTCTAATGAGCCGTAAGAAAAAAGGGTTAAATTCCCCAAAATGAGCCACCGATCTGATTAATAAAACCTTTCCGCGAATATCCTACA # Right flank : AGCTGTTGAAATTAATGTTGAGCCTTATGTTCGTTGGGCTAAGGTTTGTGCTATCAGCTACTTGGTTGAAAATACGTGGATTGACGGTGATTTAGAGGCTTTTGACGTACGAGATCACAACGAATTCATTGATAAAGAGCTTATTAGCCGCTTATCACGTGGTGTAGTAACAAGTATCAGAGTTTTATAATACTTTTTAGGGCTCTCTGCTGGGAGCCCCTTGAAACTCATGATGTTCTAGCTCAACTGCTGCAATGCCTTCTCAATAGCCATGCGCAGCAGATCGCGGTCGTGGCGGTAGGGAATATCGCTGGCTTCCAGCGTTTCCTGCACCACCACGCGGTTTTCCATTCCTTGGATGTTGACCTTTGGTCCCACGACAACGCCGTCGATAGCATGCCCACCGATGGCTTCTTCCATGATGCGCAGTTTATCGGGCAGGGTTAATGCCGCAGCCGCGACGCTCAGCTCTTTTCCTAGATTACCGATGTAAATCATAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 83684-84672 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEDZV010000001.1 Hafnia alvei strain FDAARGOS_950 tig00000002_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 83684 28 96.4 32 ............G............... GTGATGGCGGTAGCTTTGACGTAAAGGGAAAC 83744 28 96.4 32 ............G............... GTCGCGGGGATTAGTACGGCCTAGCGCCGTAT 83804 28 96.4 32 ............G............... GTCACCAATTAACGGTTTAAAACCACGATACA 83864 28 96.4 32 ............G............... AATGCCCTGCACTTCTTGAGCGTGAAGTCGTT 83924 28 96.4 32 ............G............... TAAAATCTATCAATATTGATACGGGAATGGTG 83984 28 96.4 32 ............G............... ATCGATCCAGCCCTCATCTTCGTAACGTCGAT 84044 28 96.4 32 ............G............... ACTATACGAGCGCCAAATTTCACCTACTGTGT 84104 28 96.4 32 ............G............... TTCTTTATATTCTACATATTCTATAGCTTGTT 84164 28 100.0 32 ............................ CAAGTCTCCTGAAATGCTCGAGGAGATATGGC 84224 28 100.0 32 ............................ AGTGAAGGAATAATACGGTTTTTGGTGTAGCG 84284 28 100.0 32 ............................ GTAGCAAGAGCGCCTAATAACTATGGTGTTGT 84344 28 100.0 32 ............................ CGAGTTAATAGCTTGGGGCTTTTTGCATTCAA 84404 28 100.0 33 ............................ GTGGCTTGGTTTAACTGCTGAGCAATTAGCCGA 84465 28 100.0 32 ............................ GGTCTTCAAACTCGTCACCAAAGTATTCTCTT 84525 28 100.0 32 ............................ AGTTTTGTGCAGCATCAACGACCAACTGACAG 84585 28 100.0 32 ............................ GTGTTGCGGCACACGCTGTGCCAGTTCGCGAT 84645 28 75.0 0 ...........C........TCC.A.TC | ========== ====== ====== ====== ============================ ================================= ================== 17 28 96.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTAACTTTCACCGGCAAAGTGCGCAACCACAATCTTGGTGATAACGTTAGCGCGTTAACCTTAGAGCACTATCCTGGGATGACGGAAAAAGCGTTAAATGAAATTGTGGCAGAAGCCCGCTCGCGCTGGCCTCTACAGCGTATTTCGCTGATCCACCGCATTGGCGCAATGTATCCCGGAGATGAAATTGTATTCGTTGGAGTGACCAGCGCACATCGCAGCATGGCCTTTGATGCCGCTGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCGTTTTGGAAGCGAGAAGCCACAGAGCAGGGCGACCGCTGGGTCGACGCCCGCGACAGCGACCAACAAGCGGCAAAACGCTGGTAAATCCTTTCAACCCTTTTTTCTGCCCTCACGCTAACTCATTGATTTTTCATTCCTCCAATGAACCGTAAGAAAAAAGGGTTAAATTCCCAAAAATGAGCTACCGATCTGATTAATCGACGCTTTCTGCGAATATCCTACA # Right flank : CATCTTCTGTCCCATTTTCACTATACTTATTTCAGCACTGCACCATTGTTGCAGTATTTGAATTAACTTTTGCAGAGGTAAGGGGCTAATTTGATTTGGTTTGAGCAAGGTCTTTATTTGCGGATTGAAGAGTTGGAGAATGGGCCACGGCCTTTGCCGCTGCGTAGCGGGTTTAGTCGTGAAATAGCCTATCGGGCGCTAGGTGTGTTTAATCCCTCTGAATCATCGGATGCTTACTACATATTATCTAACGATCGGGATGAAATATGGTTTATCTGCAATCGACACTTACGAACGGTTGCGCTTTTGCCTGATACCACTGACTTTAGGCGTCCGATTACCGATTGATTATGGACGTGGTTGTCATTTTATCTGTTTTAATTTGGATATAACTTTTTGTTAAGAACTTTAACGATACAAAAACTGCTCATTGGCACCTTGTACCCGAGTTATTTTCCAACCGTCCTGCCAGACTAGCCACAGAATGAGATGTTGCTGGA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 144910-145297 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEDZV010000001.1 Hafnia alvei strain FDAARGOS_950 tig00000002_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 144910 28 100.0 32 ............................ GGTACGCTGGCAATGATTGTGCATGCGCCGCT 144970 28 100.0 32 ............................ GTACGTGCTGGATACCCGCATTATGTCTGGCA 145030 28 100.0 32 ............................ ACGCGGGCAATGTTGGGAAACAGCTGCATCCA 145090 28 100.0 32 ............................ GGTGCCACGGATCGTTGCTGCGATTTCGTCGC 145150 28 100.0 32 ............................ ATGTCATCCATGAATGCCGCGGCTCGCGCCAC 145210 28 100.0 32 ............................ ACACTTCCTCGCTCAAGCTGACAAGGCTGGTA 145270 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGATTGAGTCATTTTAAACCTCGAGAGTGACTTAATTAATGACTACCACTGAGACGCTAAACTCGGGTGGCAGCTCAGATAGGGTTAGCGTCACCGACACTCTCGAAATCAGTGCTTCTTGCGAAGCCCCTGCCTGAGCCACCATTGTTCGGGTGAGTCTAAGCGCACTCCATTATGGCATAGTGCTGTCGAGAGATGTATTGCGGAACGCTAATTCCGACTACGGATTTTTCCGTAGCCAGAAAACTATATGCTTGTAATTTCAACAATGAAACGGGCTGGATGCATTTACAGTGAGTTACTGTTAGATATGGAATCAACTTCTCGGAAATGAGGGGGTAAAATGCAAAAAACTTTATTTTCCAGCCAACCCTTTTTTTTTCGCCTACCTATAACTCATTGATTTTATATAAGTGTTCATCTGGAACATAAAAAAGGGTTATGCAGTGAGAAATGAGTTACGGATCTGATTATTCGAAGCTTTATGCGAATATTCTACA # Right flank : AAGTGCCAATAAGTAGTTGAAATATGCTCAACCTCTATTTCTAGATTATTTATATATAAAAGGAATTTATATGTCTTGGAATAAATATGCAGCTGTTGCCTATGTTAAAAACCACGCGCATGCACATAGTACCGGTTATTGTGCTAGGGCTGTTGCCAAAGCTATCGAGGCAGGAGGTGTTTCAATAGTTTCTGCAGATGCAAATAATTTTGAACGTTCGCTTCGTGGGGCTGGATTTAGGGAGGCAAATGGCCAGCCGGAACCTGGTGATGTCGCAGTCATCGAGCCAATACCAGGACATCCGCACGGGCATGTTTGCATCTATGATGGTCAAGATGGTTGGTATTCCGATTTTATGCAGCATGGCATGTATCCTGGGGGAGCTTATCGGAAATTAAAACCTCAGTTTAAAATTTATAGGCATTATTGATTATGAATAATTTATTGATATTACTATTTTTTATTTCTTCACCTGCCTTTGCTGTCAGCGATATTAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //