Array 1 93050-92288 **** Predicted by CRISPRDetect 2.4 *** >NZ_CXXD01000002.1 Escherichia coli isolate YS river water, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 93049 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 92988 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 92927 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 92866 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 92805 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 92744 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 92683 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 92622 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 92561 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 92499 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 92438 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 92377 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 92316 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGGCTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 109815-108566 **** Predicted by CRISPRDetect 2.4 *** >NZ_CXXD01000002.1 Escherichia coli isolate YS river water, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109814 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 109753 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 109692 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 109631 29 96.6 32 ........T.................... ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 109570 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 109509 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 109448 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 109387 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 109326 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 109265 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 109204 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 109143 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 109082 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 109021 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 108960 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 108899 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 108838 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 108777 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 108716 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 108655 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 108594 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //