Array 1 79802-83729 **** Predicted by CRISPRDetect 2.4 *** >NZ_UKMV01000007.1 Klebsiella pneumoniae strain EuSCAPE_IT039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 79802 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 79861 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 79922 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 79983 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 80044 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 80105 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 80166 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 80227 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 80288 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 80349 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 80410 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 80471 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 80532 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 80593 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 80654 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 80715 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 80776 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 80837 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 80898 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 80959 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 81020 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 81081 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 81142 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 81203 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 81264 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 81325 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 81386 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 81447 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 81508 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 81569 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 81630 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 81691 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 81752 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 81813 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 81874 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 81935 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 81996 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 82057 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 82118 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 82179 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 82240 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 82301 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 82362 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 82423 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 82484 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 82545 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 82606 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 82667 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 82728 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 82789 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 82850 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 82911 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 82972 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 83033 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 83094 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 83155 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 83216 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 83277 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 83338 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 83399 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 83460 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 83521 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 83582 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 83643 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 83701 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 65 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //