Array 1 288315-289257 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUGZ010000001.1 Gardnerella vaginalis strain UMB0662 SC_contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 288315 28 100.0 33 ............................ CGTATGGATCTGCATCGAGTGATAGTTCTAGCA 288376 28 100.0 33 ............................ CTAACCGTAGGCGTGAATAAGCAATTTACTTTC 288437 28 100.0 33 ............................ CAAAGGGGACGGCACAAACACCGCCCCCTTTTC 288498 28 100.0 33 ............................ TTATAGGCGCGGCACTGTAAAGCCGTCAGATAT 288559 28 100.0 33 ............................ TACGATTTTAGAGCTAAGAAAGACGCGCCATGC 288620 28 100.0 33 ............................ CTTTAGTTTTACGCGGGGACCGCTTAGCAAAAT 288681 28 100.0 33 ............................ CAAGCCATTAATGACAGAATTACAAATGAAATT 288742 28 100.0 33 ............................ CGCCAACCGTTATTTCCGATTGATAGCCAATGT 288803 28 100.0 33 ............................ CGTATTGGCTTCGCAGCGCGTACAGTAGTGACT 288864 28 100.0 33 ............................ CGTCATCGGCTTTGCGTTCTTCTGTTTCTTTGT 288925 28 100.0 33 ............................ CTGCGGAATAACCGGCGTATTCCAAGTCCACGC 288986 28 100.0 33 ............................ TTCACCGTTAGATACGCTAGCACTCATATAGCA 289047 28 100.0 33 ............................ CCACACGCTTAGCGGTTTCGCCAGCATCCTTGA 289108 28 100.0 33 ............................ TAAGAGGTGAACTATGAGCCGTAGAATGCAACG 289169 28 100.0 33 ............................ TAAGGATTCAGTTAGTTTTGATGGTGCGGTTGC 289230 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 33 GTCTTTCCCGCATACGCGGGGGTGATCC # Left flank : ATAATTTTATTCCTAATGAAATTATTGAGCTAACTGGTATTACATCCAACATGCTTGAATCTTATGGTGTCAGATTAGATTTAGCATTAAAAGAATTTATTGATTTTGTCGAAAAATTACCTGTACTTGGATATAACGTACAATTTGATATGTCATTTTTAAATTCTGCTTTATCTTCATTAGATGAAAGATTTGATCATTCTCTTTCAATTAACAAAATTTTTGATATTTCTCGTTTTGTAAAGAAAGAAAAGAAATTTTTAAAAAACTACAAATTAAAAACAGTGCTGCACGAATACAACATTGCTGAATCTGTTCCACATAGAGCTCTTCTGGATGCTAGATTAACAGCGCATCTTGTTTTTAATTTGACAGAATTGTTAAAATTTCTTGCGTAATAGTAGAATTGAAAGTGATGCGCAATAATGATAGCTTTGAAAAGTAAATAATTTTTGCTGTTTAATCTTGGAAAAATAGCTATTTTATTGGGATTTTTAAGT # Right flank : CCTACCAGCTAGCGAGGCTGAAGGCTTGGCATTGTTGCACGAGTATAGCGAAGACGCGAAAGACTAAAAAATTTTTGTTCACCCCCTTGCTAATGTTCTCACATTGTGATAATATTTAATTATGAAAGGAGGTGAACATGGAAATAAAAGATTGGATTGCGCTAGTGCTCAACATTCTAACTATCATCATTATGATTTGGTTAGATTTACGACACGACGATAAGCGCAAGTAAAAAACGGGGGTTCCAACCACTCATATTGGCTAGAACCCCTAGCCTCAATCTTTCCACACGATTATGAGTAGAGCAAGAGTATTAGGTATTATTTCAGCTATCTGCGCTATTACCGCGGTAACAAACGTTATTTTGCAAGTGCCATTCGCTGGCATTGGGTTCACTCTAGCTGCTGGCATTGCTGGCTTATCCGCTGGCTTAACGGGCAGTAGCAAAGAAAAATAAAAGGAGCTTACCATGTTAGATGAGAACGGACAAACAGTACTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 595089-594539 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUGZ010000001.1 Gardnerella vaginalis strain UMB0662 SC_contig000001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 595088 36 100.0 28 .................................... ATTCTACGAGTGATTGCAGCACGCGGTT 595024 36 100.0 29 .................................... AGTACCCGGACGAGCACACGCGGCAACAG 594959 36 100.0 28 .................................... GGTTGCCTACTATTGTGATTGTGGTTTC 594895 36 100.0 28 .................................... GGCTATCCTTGACGGCTTGCTGAAAGGC 594831 36 100.0 28 .................................... GCATGATTTCAAACACAACAACATAATG 594767 36 100.0 28 .................................... ACCATTATCAAGAAGCTGCACGCGGATA 594703 36 100.0 29 .................................... TACCAGCTGATTTTGTTATTGTTAAAGCC 594638 36 100.0 28 .................................... GTTTGAAATTACTGGCAATAACAAGAAG 594574 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 9 36 100.0 28 CAATTATATCAAGAAGGATAGAAGCTAATTTTCAAC # Left flank : TAATGGTTCTGGACATACTATTCCTAGTGCCTTATCTGATTTAGCTCAATCATATGGTATTTATGTGGAAAAAGACGTGGAAGAATTTCAAGTACCACAATTCATAAGGAGCGGATTATGAAAGTCGATGAAGACAGTGGTGGCATGTGGTGTTTAGTAATGTTTGATTTACCGGTGAAAACAAAAGTAGAGCGTCACGCTGCAACTGTATTTCGCAATATGCTTCTTGATATGGGATATGCAATGGTGCAATTTTCTGTATATGTTCGCTATAGCCCCACACAAACAGGAAATAGAACTTCAGTAAAAATAATTAAGGATAATCTTCCGCCGCGTGGATCTATACGCATTTTACATGTCAGTGATCATCAATGGTCATCTGCACAGCGCTATTACAATGCTAGGCAAGAAAAGAAAGAAGAAACTCCAGATATTGCTGTGCTTTTTTAATCGTAAAACACTTTATAATAGTTGAAATTCTACCCTTCTTGACGATATAC # Right flank : TAATAAATAAAAACGGGGAAGCTGGAAAGCTTCCCCTGCAGTGATAATCATCAAAACTGCTGAGCAATCAAACTGGATAACAAGTCCAGTCTTATTGAAAATTAGCACTTCTAATATATCATTTTTAAGAAATAGAAAACAAGTGAACTTTTCTAAGTTTTGCTAAAAAATTTAAAAAGTAACATATTGATATAATCAATAGATAGTGTAGTTGAAAATATTTTTACTTTACGCATGTGTGCGTTTTTAAAAAGTATCTTCTGGGAATGTATGTAGGATTATAGGCTCAAAAGTGTGTAAAGCTAAGCTGATGAATATTCTGTGCATAAACCATATCTTCAGCACCGTTACTAACTCAGTTATCTAACTGAGAAAGTAACGGGAATCACCCAAACACTGTTAAAAACTCAGTCAAGTATCTGAGAAAGTAACGGTCATATGTTACTGGTGCAGTAGCTAATCTGCGTTAATAACGAATAATTGCGATTTATCGTTACTAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAATTATATCAAGAAGGATAGAAGCTAATTTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //