Array 1 927-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXWI01000020.1 Helicobacter pullorum strain NAP1W4 contig020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 926 36 91.7 29 ....G....GG......................... TTGGCGTAGCTTGAATGACATAAATCTCA TA,TC,A [909,917,920] 856 36 100.0 30 .................................... CGAAAGAAGGCGTTCCTCGTATGATTATTT 790 36 100.0 30 .................................... AAAAGACATTCTAGCGAGCGAGGGAAATAG 724 36 100.0 29 .................................... TCAAGAGCTGATACAATAGGACGCTGACC 659 36 100.0 30 .................................... TATCAAAAAGCTATGATAGCTGTTATCTTG 593 36 100.0 30 .................................... AGATTTGAATCTAATAGGACGTTGTGAAAC 527 36 100.0 30 .................................... TTTTTCCTCGTTAATAACTTTTTTAACTAA 461 36 100.0 30 .................................... AGGTGTTCGCTATGATATTTTTAAAGACGA 395 36 100.0 31 .................................... CTTTTTCTTTTTTAACCAAAAAGGTGATTAA 328 36 100.0 30 .................................... AATTCTATTTTGAAATAATATTAATGCTTT 262 36 100.0 30 .................................... CTTATTTTGAATTAAAGGCAATGTAATGAA 196 36 100.0 30 .................................... AAAATTGGATGCTATTTATATATAGATGTT 130 36 100.0 30 .................................... TAACAGTAACAGACGAGTTACCACCTTTTG 64 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 99.4 30 GTTTTAGTCCCTTTTTAAATCTTTCTATGCTAAAAT # Left flank : ATTTGTAGCAAACACACTTCCATTAGGCGCCAAGTCTAATTCAAAAGTATGAGGCTGTTCTCCATTAAAATACCTGTCTAACCATATTTTAGTTTGCAATAAGATAGGTTCATCGTCTTTTTCTTGTGTAGATTCCTTAAGATTTCCTAAATAATATTTCTGCCCTTCTATCCAAGAACCTATAAGCTTATCATCTTTGCTTGCTAAAAGTATCGTGCCAATAGGACTTTGGTAAAAAGTAGTATATACCATGATTTTTCCTTCAAATCTTAAAAAATATGTTTGAATCTTGTAGTGTGTTATCCTTGCTTTTTTAGTCTAAATTACGAAAAACCCCAAAAAATAAGACAATCTAAAACTCTATTAATTTTTCACCGCACATTAGCTTATCGCACAAATCCAAAATATAAATATAGCAAACCTATCTTATAGCAATCAAAAACTGCATCATTTAAAATATTTTAAAAAACCTAAATTATATCAAAAACAATAAAGTAATG # Right flank : TTTCAAAAATGAAGGGCTTCCTATACCAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATCTTTCTATGCTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 7511-8207 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXWI01000004.1 Helicobacter pullorum strain NAP1W4 contig004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7511 36 100.0 30 .................................... TCTATTAACACTATTATTGAAGCAGGTTTT 7577 36 100.0 30 .................................... TTCTGGCGTTATTACACGTGAAGACTACGA 7643 36 100.0 30 .................................... CGGAATAACCAAAAATAGAATCTTTATTAG 7709 36 100.0 31 .................................... TTCTGATGATGTCTCCACAGGAAATCCTGGA 7776 36 100.0 30 .................................... CAGGACCAGTCATATCATAGTTTTTTGATT 7842 36 100.0 30 .................................... CTCGTAACTATCCATTTATTTGTTGGCTTA 7908 36 100.0 30 .................................... ATCGGTATGCAAGAAGTTTTAACTCAAGAG 7974 36 100.0 30 .................................... TTGTGGTATAGGAAGCCCTTCATTTTTGAA 8040 36 100.0 30 .................................... CAAAAGGTGGTAACTCGTCTGTTACTGTTA 8106 36 100.0 30 .................................... AACATCTATATATAAATAGCATCCAATTTT 8172 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 100.0 30 ATTTTAGCATAGAAAGATTTAAAAAGGGACTAAAAC # Left flank : AGAGGGAGTATCCGCTGTCTTATCATCACAGAGAAGCAGTTTGATTCTATGGAGATTTTGCTAGGTGGGGTGGGATTCAATGAGATGATGAATGAGCCAAGAAATCTCGTACTTTTTGGGTTTGATGAGAAAAAGGGAGAGTATGTGTATGCGGATAATGATAAAGATAGCGATGAAGAGAAGTTGTTGCAAACAAAATCAAAGAAAACAAGAAATATACAAGGAAGTTTATTTGAGTTTTGAAGATAGAATGGTGTGCTACTTAGGATAATATGTGTAGAATAGTAACAATATAGGGAATATAAAAAACAATAAAATGTGAAAAGTATTATGTAATATAAAGTAAAAAAGTCTTGGCAAAAAGGGATTTTTGGAGGTTTTTAATCTCACACCCTGCACCTTTACTCCTAGTACTGCCAAGAAATACTAGGTAGGTTTATTTTAGTCCCTTTTTAAATCTTCTTTTGCTATTGTAGCATAAAATCCCAATTTTTTGGTCT # Right flank : TTCATTACAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAGCATAGAAAGATTTAAAAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //