Array 1 30534-31472 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP034040.1 Klebsiella pneumoniae subsp. pneumoniae strain CRK0298 plasmid p1, complete sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     30534	    29	  96.6	    32	............T................	AGAGGACTGGCACGTCACGCCCTGCTGCGGAC	
     30595	    29	  93.1	    32	............TG...............	TTATCAATGGGGAAAAATCTTCATTTGTAACT	
     30656	    29	 100.0	    32	.............................	AATCCTGGAGCTGGAAAGGGAGCTTGCCTCGC	
     30717	    29	 100.0	    32	.............................	ATGGGCTGGCGCGACTCAAATGCCCGTTTGGC	
     30778	    28	  93.1	    32	..........-.T................	CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA	
     30838	    29	 100.0	    32	.............................	GAAAGTAGGGGCTACGCCGGAATTCCGAAGAG	
     30899	    29	  89.7	    32	A...........TG...............	TTACTTTTTGGCAGTTGGTAAAACACTTTTGC	
     30960	    29	  89.7	    32	............TGA..............	TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA	
     31021	    29	  89.7	    32	............TGA..............	CACTACCAGATCCGAATGGACACCCGTAATGA	
     31082	    29	  96.6	    32	.............C...............	GAATGAGAGCAAAATAATGAAATTAACAGGAC	
     31143	    29	  93.1	    32	............TG...............	CTAATGAGCGGTATATTTTTTCTAATCTGAAA	
     31204	    29	  96.6	    31	.............T...............	TGACTTTTAAAAAAATCAGCTGAAACAGCCG 	
     31264	    28	  89.7	    32	.....-......TC...............	TGCGTGCAGTAAACGAAAATACATCGGTCAAT	
     31324	    28	  89.7	    32	.....-......TG...............	TAAAAGCGTTTTACATGCATTCAAAAAAGTTA	
     31384	    29	  93.1	    32	............TC...............	GGCATGAGCGAGAACCACTGCGAGAGTGTGGT	
     31445	    28	  82.8	     0	..........A...........-..C.TT	|                               	
==========	======	======	======	=============================	================================	==================
        16	    29	  93.3	    32	GTATTCCCCCCGCATGCGGGGGTTATCGG	                                	       

# Left flank :   GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA
# Right flank :  TCACAAAGTCACAACAACAGTCAGCAAAAACCACGCGATGATCGTTATTGAGGATTTGAAGGTTTCCAGCATGTCAAAATCTGCAGCGGGTACGGTAGATGAGCCGGGGCGCAACGTTGCGGCAAAATCAGGTCTTAACCGGGCGATACTGGATCAGGGCTGGTACGAAATGCGCCGCCAGCTCGAATATAAGCAGCGCTGGCGTGGCGGGGAAGTGCTGGCAGTAAATCCGGCCTACACCAGCCTGAAATGCGCCTGCTGTGGTCATACCGCGAAGGAAAACCGTCAATCGCAGGCAGTATTTGTCTGCGTGGCGTGTGGTTACGAAGCGAATGCTGATGTAAACGGCGCGTGTAATATTTTAGCGGCAGGACATGCCGTACTTGCCTGCGGAGGGACGGTGCAGTCAGTCCGCCCGATGAAGCAGGAACCTGGCACTGAGCGATCAGTCGTCACCCACTAATAATGGGAATCCCCCTCCTGAATCTCGCAGCGTGAAG

# Questionable array : NO	 Score: 5.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTATTCCCCCCGCATGCGGGGGTTATCGG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.10,-12.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [9-17] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.18,0.74   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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