Array 1 673-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAVV01000110.1 Thermodesulfovibrio sp. N1 contig00110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 672 36 100.0 36 .................................... AAAAAGAGGAAAAAATGAGAGAAATTCTGATTTATA 600 36 100.0 37 .................................... TCAATTCTTTCTCCTTTCAATCCGTTAGTTTGTTTAG 527 36 100.0 35 .................................... CAAGACTCTGAAAGATTACATGGAAGAAATTGAGA 456 36 100.0 41 .................................... AAAGGCTTTGATGCTGTTTAAAAACAGTATTAAACCCTGAA 379 36 100.0 37 .................................... AAGTTAATTGTGGTTGTGGTGCTTTTGGTAGCAGCGG 306 36 100.0 36 .................................... GTAAGATGAAAAGGAAGATTTGTCCTTTGATGTCTT 234 36 100.0 41 .................................... TCCTCATTGAGCAGCTTGCAACGGCTCAGGATATTCTTGCA 157 36 100.0 39 .................................... ATATGGAAGTAAAAGGGAAATCATTTACTCTCCCTGACG 82 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 9 36 100.0 38 GTCGCAATCCCTTTTAAATGAGGTCAAGTTTCCTAC # Left flank : TTTCTA # Right flank : CTCTGTGAGTTCAAAGAAAAGGTTTGTCACCTGAAAGCAGTCGCAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATCCCTTTTAAATGAGGTCAAGTTTCCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 1057-13 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAVV01000106.1 Thermodesulfovibrio sp. N1 contig00106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 1056 36 100.0 35 .................................... CAGAAAACCAAAATTGAAAATATTGCTTTTGCCAT 985 36 100.0 36 .................................... AGATTTTTCCTGCCGTCAAAATCTTGACGGCAAGCA 913 36 100.0 34 .................................... ACTTCGCAAGGTACGGTTTCTATAGGGGAAACTG 843 36 100.0 45 .................................... GGAACAGTGCAGATTGGAAATACTCTCTACCATGTCCCGTAGGAA 762 36 100.0 37 .................................... ATATAATCATGATAATAAAAAAATTTTTGGAGGTGCA 689 36 100.0 34 .................................... GTAGAAACAGGAGAAGGAAGATTTGCTATAGGCG 619 36 100.0 36 .................................... GAGAAGAAAAAAATAAGTAGGAGGCGTAAAAATGAA 547 36 100.0 35 .................................... CGAAAATGAAAGAAATTTTGGTATATAAAGATATG 476 36 100.0 35 .................................... GAAAATCCTGATACAAATTATATTGATCCAGGTGA 405 36 100.0 36 .................................... TGCACGGCTATTCGGTATATCATGGAGGATTGAAGA 333 36 100.0 34 .................................... AGTAAACGGAGCTGAAGATGAAAAAGAAGACATT 263 36 100.0 33 .................................... AAGTTAAGAAGACAAATACAAGCGGTTTTGAAG 194 36 100.0 38 .................................... TGAGAGCTACAAAAATAAACAGGAGGAGGAGGAGGCCC 120 36 100.0 36 .................................... ACATAGAAAGACTAAAGGAGAAAATAGGACAGGCTC 48 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 15 36 100.0 36 GTCGCAATCCCTTTTAAATGAGGTCAAGTTTCCTAC # Left flank : TCAATGAAAG # Right flank : CGGAGTTAGTCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATCCCTTTTAAATGAGGTCAAGTTTCCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [10.0-11.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 26624-26043 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAVV01000023.1 Thermodesulfovibrio sp. N1 contig00023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 26623 36 100.0 31 .................................... TGGGATACGGCCTCCTTCACCGACATCCCAA 26556 36 100.0 33 .................................... CCATGCCGATACATTACATCCCTTACTGCTTCT 26487 36 100.0 34 .................................... AACATCGAAGCCTGGACTCGATTTAGGTCTAGGG 26417 36 100.0 32 .................................... AAAAGATGTTTCCCACCTTTGGTGGGGATAAT 26349 36 100.0 33 .................................... TTAAAGTCATAAAAGATAGACTGAAAAATATTT 26280 36 100.0 31 .................................... CGAATTGGTTTTCCAATCCAACGCGCCCCAG 26213 36 100.0 32 .................................... CCCAGGCCCGAGTGGAAGAGTGGGTGCAGAAA 26145 36 100.0 31 .................................... GGTTTTGCATGGTGAAGACCACCTCCGATTG 26078 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================== ================== 9 36 100.0 32 GTCTCAGTCCCTGACATCAGGGATATCTGTTTGAAC # Left flank : | # Right flank : TATCCCTTTTGTAACCCATTCTTTTCAAAGAACAATTTTGACCTCTTTTTCCAAACCTCAAAGGTTTTGAAAGTTTTCAACAACTTTTCAACATAGGTTTGGAAAAATTTATATTTTCCTTTGTACTTCATTATCAAATTTTTACAAAAATTATATAATAAAAGCATCTTTGTCATCAATTGATGGTGGAGGATTCCCCATAGTTTTAGCATCTACTATGTCTGTAAGAAGATAGATTTTTATAAATCCTGTCTGTATTTTTAATTCACGAAGTTGTTCAATTAATTGTCTTTTTAAGGCGGTAGTTAATTTACATTCAAATACGCTTTTTTGCACTCTAAAGCCGTACTTCTTTAATACTTTGTCTACTTTTGCTCTTTCTTTATCATCAGATATGTCATAGACTACTACATATTCTTCAAATCTTTTACCAGGGTATCTCAAAGCTTATTTCCTCCTGTTGAGCTGTTACCCACTGTTTTATGTGATTAATCTGTATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGTCCCTGACATCAGGGATATCTGTTTGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 589-57 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAVV01000111.1 Thermodesulfovibrio sp. N1 contig00111, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 588 36 100.0 35 .................................... GAAAAAGAAACCTACGCATACATAGGCGATGATAT 517 36 100.0 36 .................................... AAATTCCCACTTGTCAAGTTTTGAACGGATGGGAAG 445 36 100.0 33 .................................... ATATGCCACTATTAACGCCAATAATATCCCTTC 376 36 100.0 37 .................................... GTGGGAAAGTTTAGAAGAATACTTTAAAAAACATTAT 303 36 100.0 36 .................................... CTATGAAAATGCAGGAAAACTTTCACGAAGCTTGGA 231 36 100.0 31 .................................... TGTTTTTATATTCAGGCATGTTATTTTCTAC 164 36 100.0 36 .................................... TTAACGAAATAATGACGGCGGGAGATTCCTCTCGCC 92 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 8 36 100.0 35 GTCGCAATCCCTTTTAAATGAGGTCAAGTTTCCTAC # Left flank : CAAGGCAGTAAGGTTTAATTTTATTCATAGATTTTTATGATAATTGGTTATGCCATTATTGTCAAGCTTTA # Right flank : CTGTTTTTATATTCAGGCATGTTATTTTCTACGTCGCAATCCCTTTTAAATGAGGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATCCCTTTTAAATGAGGTCAAGTTTCCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 4250-5391 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAVV01000027.1 Thermodesulfovibrio sp. N1 contig00027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 4250 29 100.0 36 ............................. TAGTGCTATAACGGTTGATGGCAATATATTAAGGTT 4315 29 100.0 36 ............................. TTATTTGTTGTGGGTGCAACTGTTTCATCAGGATCA 4380 29 100.0 36 ............................. TGTTACATCTTTTCCAGCCCAGATTATTTCATACAA 4445 29 100.0 37 ............................. TTCATTAGTAAAAGAAAAAGTTTCCCCAAACTCATTA 4511 29 100.0 37 ............................. CTGCTGGTGCGGTATGGGGAGCTGTAAGGGTATTAAG 4577 29 100.0 37 ............................. ATACTGTAACAACAAATGCGTTAGGTTCTATAGTTAC 4643 29 100.0 36 ............................. TTGTTTACTTTTTAGTATCTCCATCAAGAAGAAACA 4708 29 100.0 37 ............................. CGAATTTTTGCTGGTGCTTTCTTTTTAAGAATTTAAA 4774 29 100.0 36 ............................. TTGGAGCCTTAGGTATTGCCCTTTCAGTAATAATGA 4839 29 100.0 37 ............................. TGTGTGACGTCAATCAAAAAGTCACGAGGTTCAACTT 4905 29 100.0 36 ............................. AAGACAAGCAAGCAGACTGCAGTAAGGTATAACTTG 4970 29 100.0 36 ............................. TCATTCACTATTCTAATTTCCATTCCCTCTTTAACT 5035 29 100.0 36 ............................. GAAAAAGAAGCCTTGGAGGATATAGAGTTGGAGATG 5100 29 100.0 37 ............................. TGTTTTAGAAAACTTTGCCATTACATCTTTTTCTGGT 5166 29 100.0 36 ............................. TATGATGTTTCTGTTTCTGTTTTATCATTGCTTTTT 5231 29 100.0 36 ............................. CTGATTAAATGAGCAAGAGCAAAATCTGCTGATGTC 5296 29 100.0 38 ............................. GTGGCTTATAAACAGCTGTCTGGGCAAAATCTGTAAAG 5363 29 93.1 0 ..................T.........A | ========== ====== ====== ====== ============================= ====================================== ================== 18 29 99.6 37 GTTTCATCTGAACCATGTGGGATATAAAT # Left flank : TTATAGTGACTTATGACATTTCTGAAGAAAGGGTTAACAAAGTAAGAAAAATACTAAAAAATATTTTATGTGGGTGCAAAACTCTGTTTTTGAAGGAGAAATTTCAGAGGGAAAACTGGTTAAATGTAAGTTTGAACTTGAAAAAGTTATAGATAAGGAAGTTGACTCCATTTATTTTTATAGTCTTGAAAACCGATTGAATTACAGAAAAACAGTTATCGGAGTGGAAAAAGAAATGACAGGAAATGTGCTTTAAGGTAGGAAAAAATTATGAAGTGATTTAATCTTCAACTTAGCATCAAACCAGATTTTTTTAATTATATAGGAAAATGTTTGATAATGAAAAATTTTTAAAGAATTTTCGTAGAAGTTGAAAAAAATGATGCAAGGATCGATGCGTATAAATTGTTTTTTCTAATTTTGGAAAATTTCATTAAAAATGATAAAATTGTTGTAAATAAAAGTTTTCATAATTATAAAATAGCTCTTTGACAAGTTTG # Right flank : AACAGGCTGGGGAGAGGATGATAAGTTTCATTGGTACGTAGATTAAAAATCTATAAATCACTGAAAAAAACTTTATAAAAATTTTTTGCTCTTGCTGAGTACTCAGAAGAAAGCTTTTGAGTTTCTTTAAGGATCTGCTCTCGAAGGGGATGTTCTTCAAACCATTGACTGAGTAACTCCTCAGTTACTTCTATATGAAACTGCAAAGCATAAACCTTTTGTCCAAATTTAAAAGCCTGAGCTTCATAAAGAGCGGATTTTGCAAGATGTATCGCGCCAAAGGGTAAATCAAAGGTATCTCCGTGCCAGTGAAAGACTTTAAATTTTCTCCATACATCTCCAACAGATGGATGTTTTGCAAGTGAAATCATTAAAGAGTCTCTTAATCCTTCAGAGGTTAATTCAATATCAAGCCAACCAATTTCTTCACCATGTCCTTTATAAACTCTTGCACCAAGTATATGAGCAATCAATTGAGCACCAAGACATATGCCAAGAAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCTGAACCATGTGGGATATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 15407-14645 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAVV01000041.1 Thermodesulfovibrio sp. N1 contig00041, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 15406 36 100.0 35 .................................... AGGTCAGGGAATTTTAACTTTATTTTCAGGCAAAA 15335 36 100.0 34 .................................... AGAAAATGCAAGTAGGACAAAGATTCAATCCTTT 15265 36 100.0 39 .................................... TACACATTTTAATACAGCAAAGCGTAGGTTATTCTTTGC 15190 36 100.0 37 .................................... AAAGGTGCTTCACAAAACATCAAAATATTACTTTTAT 15117 36 100.0 38 .................................... TTAAAGAGCTTCCACCAGATACAGAGGTTCCTGAATAT 15043 36 100.0 36 .................................... TGCATCGACCAGAAAAAGAAATTGGCGAAATTGAGA 14971 36 100.0 37 .................................... CACAAACTCATCTCTGAAGAAGAGTATCGCAAGCAAA 14898 36 100.0 39 .................................... CATACAGCATGCGAAAAGCACCCTCCACACCACGGGGAT 14823 36 100.0 35 .................................... CCAAGCTTTTTGAAACAGTTTTGCTTAGCAGGAAG 14752 36 100.0 36 .................................... CATTCTGTGAGTTCAAAGAAAAAGGTTTGTCACCTG 14680 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 11 36 100.0 37 GTCGCAATCCCTTTTAAATGAGGTCAAGTTTCCTAC # Left flank : CCTACTTAGGGATTTTCTGACCCGTAGCAGAACAGGCGGGCACAGGGA # Right flank : CAGACCCCCTCTTTTTTTCTCTTATTTTTCAATATGTTATAAGGAGGGTTTTGCAAATTTTTCAGGAATTTTTCACTTACGGTTATTCTGTAAACCATTGATATTGCTTGATTTTCTGACATAAGAAAATCAGCTATTTTCAATGGATTATGAAACATCAATATTTAAAACTTGATAAAATGAGATCCTGCTAAGGAGAAGATTCTTCGCCTTCGGCTCAGAATGACAATTCACTTAGTCTGTCCTTCCATTTCCCTCTCATTATTAGATTATACCCCATATTCATAATATACGATGACAAAAAAGAAGCTCAGACGCTTTCTTTAGGCTTCGCTCTCTAAATAATACTTCAGCTTTTATTTTTTCGGGCTTTGCCCTCTAAAAAAGACTTCGTCTTGTCAAAGAACAATTTTTTATATAATTAAATCAAAATATTATTTCGTATGTCAACTGAAATTTTATGCTAACAGGTTATTGTAACTAAAATATTTTATTTTGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATCCCTTTTAAATGAGGTCAAGTTTCCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 9389-10235 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAVV01000058.1 Thermodesulfovibrio sp. N1 contig00058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 9389 36 100.0 32 .................................... TATAATTGATATCCCATTCCCAAATGTCTCAC 9457 36 100.0 30 .................................... AAAAGAAAAATTTGTAAAGGGAAAAATTGA 9523 36 100.0 31 .................................... TTTTAGCCCTTGCTAATCCTATTCCTTTTAT 9590 36 100.0 32 .................................... ATAAATCTTGTTGGAGCTGCTTTTGTATTATA 9658 36 100.0 31 .................................... AAATGCACCGGAACTAAAAGTTCCGGTAAAA 9725 36 100.0 30 .................................... AATCCCCAAACCCGTTGGGAGTTATTCAAA 9791 36 100.0 30 .................................... TTAAAGAACTCCTTAATGAAAAAATAGAAA 9857 36 100.0 33 .................................... GTAGAAGAAGGACAAAAGAGGGATATCCCATTT 9926 36 100.0 33 .................................... TTTATGTCTTACCTGATCTATCTAAAAGATATG 9995 36 100.0 32 .................................... CAGTCATCATGGTTGGAAAGGAAACTATTTAG 10063 36 100.0 33 .................................... CTTCCTTTGGTTCTACTCCACTTTCAAGGTATT 10132 36 100.0 32 .................................... TAGGACTTAACATCCTCTGGGAGAGCTCCCTC 10200 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================= ================== 13 36 100.0 32 GTCTCAGTCCCTGACATCAGGGATATCTGTTTGAAC # Left flank : GGGATTAGAATCTAATGTTACAGAAACTATTCCTGAAGAGATTATGATTCCTGCAATAGGTCAGGGTGCAATAGGAATTGAAACAAGGTTTGATGATGATTTTATAAATGAGATAATCAAACCATTGAATCATCAAGAAACATCTATTTGTGTTCTCTCAGAAAGGGCTTTTTTATCAGTAATTGGAGGAGGCTGTCAAGTCCCTCTTGCGTGTCATGCAAAGATTTTTAAAAATAAAAAGTTGAAAATAATTGCAATGATAGGAGATCCGGATGGTGAAATGCCTATGATAAAGGGCAGTAAAGAAGGCAACCTTGAAGACGCTCAAAAACTTGGTAAAGAGCTTGCCGAAGAGTTACTTTTAAGCGGTGGAAGTAAGATACTAAGAAAAGTTTATACCTGAAAAGTGTAATTTTCACCTTCAAAATTTTTCAATTCAACATAGAACCGTTGGGCTTTGAACGTTGAACACTCAGATGAAAAAAAGTCCATAAGACGAA # Right flank : AC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGTCCCTGACATCAGGGATATCTGTTTGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 1-610 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAVV01000078.1 Thermodesulfovibrio sp. N1 contig00078, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1 36 100.0 36 .................................... TAATAGCCCATTTATCGTTTACAACCCTGCTTCTTC 73 36 100.0 35 .................................... TTTTATAGCCGCCTTCAATCTGCCGTTTTCTACAT 144 36 100.0 35 .................................... ATTAATATCATCGTAGTAACCATCTTCCGACAGCG 215 36 100.0 38 .................................... ATTTCCGTTGTAGAATATTTCACTACCTTGACACGGGG 289 36 100.0 37 .................................... GCTTCTTCAGGCTTGCCTTTGCAGCCTGAAGAAGGAC 362 36 100.0 34 .................................... GTTGAACTCGACGAAGTCGTCGAAGTGAGGGAGT 432 36 100.0 35 .................................... TCACTCAACTCATCGCTATCACCTTCTTCTGCTTC 503 36 100.0 36 .................................... GTAAAACAGGGCTCTTGATGTTTTTTAAATTGTTTA 575 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ====================================== ================== 9 36 99.7 36 GTAGGAAACTTGACCTCATTTAAAAGGGATTGCGAC # Left flank : | # Right flank : TTGGATTAGTCCAGCAGAGCAGTAGACCAGTAGAACAGCAGTTTTGATATAATCATTTATGGCTAAATATAAAAATCTTATTGTGTGGCAGAAAGCCAATGAACTTGCATTGAAGATTTATAAACTCACAGAAGAATTTCCTAAAAAGGAGACCTTTGGCATAACTTCTCAGATTAGATGTGCAGCACTATCAGTGCCTACTAACATTGTTGAAGATTATGGAAGGAAAACAAAGGTTGAACTTTCCAGATTTCTTGATATGGCAAGGGTTAGTCTTGCGGAGACAGAATACTTACTGGAGTTTTCTAAAGAGTTGGGCTATATAAAAACAGACATTTCTGAAATTCAATCTCTTATTGAAGAAGCAGGAAAACTTCTTTGGAATTTTCAAAAAGGTCTTTAACTACTGCGCTACTGCTCTGTTGCTCTACTGCTCTCTACCTTGACCTCATTTAAAAGGGATTGCGACTTCTTTTTCCTTCATTTTGCTCCTTCTTTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGAAACTTGACCTCATTTAAAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 3-256 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAVV01000064.1 Thermodesulfovibrio sp. N1 contig00064, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 100.0 36 .................................... GGAGTTAGTCAGAAGGAAGAGGGTTAGAGGAAACTC 75 36 100.0 37 .................................... TGAAGGCATCCCAGAGGCTTGAGATTGTGCAGAAGGC 148 36 100.0 37 .................................... GGGGAAAAGAGGATGCTTACGGAATGTATCTTAAGGA 221 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 100.0 37 GTCGCAATCCCTTTTAAATGAGGTCAAGTTTCCTAC # Left flank : TCG # Right flank : CAGACCCCCTCTTTTTTCTCTTATTTTTCAATGGGTTATAAGGAGGGTTTTGCAAATTTTTCAGGAATTTTTCACTTACGGTTATTCTGTAAACCATTGATATTGCTTGATTTTCTGGCATAAGAAAATCAGCTATTTTCAATGGATTATGAATCATCAATATTCAAAACTTGATAAAATGAGATCCTGCTAAGGAGAAGATTCTTCGCCTTCGGCTCAGAATGACAGAGAAAGGAATCAGAATGACAGAGAAAGGAACCAGAATGACAGAGAAAGGAATCAGAATGACAGAGAAAGGAACCAGAATGGCAGAGAAAGGAATCAGAATGACAGAAAAAGGAGAGCAGAATGACAGAAAAGAAAAATAGAATGACTGAAAGGAAATCAAAATAACAGAAAAGGAATTGAGCATTATCTATAGATTAACCAGAATTGGGCTCTTCGTGCTTTGTGCCTTGAAACAATGTTTCGCCTTGTCAAAGAGCAATTTTTATAATTAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATCCCTTTTAAATGAGGTCAAGTTTCCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //