Array 1 6355-6147 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHQ01000019.1 Gilliamella apicola strain Occ3-1 Gilliamella_apicola_Occ3-1_contig26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6354 28 100.0 32 ............................ TTCACAATCTCTATATTCTGCCGATTGTATCC 6294 28 100.0 32 ............................ TAAAACAGGGAGCTGTTACTCCACACTTAGCA 6234 28 100.0 32 ............................ AATATGTTTCTGAATGTCTCTCGCCTAGCTAG 6174 28 75.0 0 .C.......T.......T.CCA..T... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.8 32 GTTTACCGCCGAGTAGGCGGTTTAGAAA # Left flank : GCATCCAATAGCTCCTCTGAAAGCCCATCGGTTTTATAATTATGAAATTGATAGCTTACATGATGATCATCAAGCCAAGTAAAAGCTTTTTTCATCGTATTGCAGTTTTTGATACCGTAGATGATATACATATTAGGTGATCCAACATTGAAAATAATAGCAAAGATTATAACAGTTATCGGCCTGAAGCGGCAAACTAAAGGGATTTATTTGTATTAATTCATATTAATACTCATATTTAAACTTAGTTGTTAAAGCCAAATGGTTATTAGTGAAAGTTTGAAAATTTTAAATAATTTGGATGGTGAGTTAAGAAATGAATTTTTGAACAGATAATTTCACTCATTTTGAAAAGATCAAACTTGTGCTAACCCTTTTTTTAATAATAAATAAAATATAATAAAAACAACACACTAAAAAAGCTCTAAAAAAAAGGGTTTTTAAAAGCAAAAATCCTATTTGTCTTTTGCGAAACAAGATTTATAGTATATCGGATTCTA # Right flank : TTAAAAAAGCCCTCAGACGAGAGCAATAGGTATCTACTGACAGAATAGCTGGCTATGGTTATTAGCTGTGTTCAAAAATTTTATAGAACACTTAAGCTAGTCATTAACAATCCATTATCAATAACATAAAATAAATATTAATCAATTAATTAAAACATTTATCAACAAAGTAACGCATAATTCGATTATTGGCGGTTAGTTCGGGGTGAAATGAGCAAACCAAAATATTATCTTGCTGTGCCATCACACAATGATTATCAATAAAAGCTAGCTGATTGACTTGCTCACCGGCTTTGGCAATATAAGGCGCACGAATAAATACTGCTGGAATTTGCTCACCAATATTTGGTATCTCTAACATTGTTTCAAAGCTGTTAATTTGCCGACCAAAACCATTGCGTTCAACGCAAATATCCATCAAATCTAATAATTCGACCTCGTTATGAGTTGCCGTTTTGCCACAGAGCACTAGTCCAGCACAAGTACCTAAGATTCCTTTT # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGAGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 27135-26627 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHQ01000028.1 Gilliamella apicola strain Occ3-1 Gilliamella_apicola_Occ3-1_contig34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 27134 28 100.0 32 ............................ TTAACGTGCTTAAATTCAAATGAGACGGAGAT 27074 28 100.0 32 ............................ AATATAGATCTCTTAAATCTCGTGTTATTAGT 27014 28 100.0 32 ............................ GATTGGGCGATTGTCGAACCATCATCCATGCG 26954 28 100.0 32 ............................ TCCATTTAGTATAAAATCCTTGATATCTGCCC 26894 28 100.0 32 ............................ TCCTAAAGCAAGCAGATGCATTTGAACCGCCC 26834 28 100.0 32 ............................ TCAAGGTATTTATAAAAGAGGCGCGAAAAGTG 26774 28 100.0 32 ............................ TCGTGAGGAAATACGTGGAACAATAGCACGCA 26714 28 100.0 32 ............................ TGCTAAGTTAATAGCTCGTTCCATTAATAACT 26654 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGTGTAGGCAGTTTAGAAA # Left flank : AACAAAGAACCAAGTACATACTGTTTAAAATCCCAACCATCGACAGCACCACGGACTTCGTCGGCAATTTTCCAAATTTGTCGTTGTAGTTGATCGCGTTGTTGCGTTTCGGTAATTGATTTAGCGTTATTAGATGTCATATTTTTCAAAATTCCTAAATAAAAAATAGGTGCTGCCTAATTAGAAAGTAACTGATTTTTACTTTCATATTAGTCATTTTATAGCTACCTGTTATAGGTGTTATAGCATAGCTGATTTGTTGTTATTTTTCCATCTGGGGCGTTTATTAAAAACTCAGCCAATGGGTATTTTGAACTTTAAGGCTGGAAAATATTAAAAAATAACAAAGCAACAAAATCTAAAAACAAAAACCCTTTTTTTAGCTATATTTTAAAATTCAATAAAATCAATAAATTAAATTTATCTCAAAAAAAAGGGTTTTAAAACCTAAATACCTATTTGCCTTTTTACATACTATATTGATAGTATATTAGCTTCTA # Right flank : TTGGTAGTAGTCTAGGCGTATAATATGATTGTTCACAGTCGTTTAAATAGTATTTCTTAACAACATAATATTGGTTTTTTCACCGCTTAAGTACGGTTGATTGAGCTAATTGGCTGTAATTAAGTGAGGAAATATAAATGCGGTATTTTTTTAGGTTTGCAAAGGGGGAATTTGCATTAATTTACCCCTTTTTTATTGTTTTAAAAAATGGTTTTTATATTAAGAATTACCATAATCAACGAGCTTTTCTGTTTTTTCGTCACGCACACCCCATTCTGAACGGTTATCTAATATGGCTCGTTGTACCTTAGGGGGATAGTCCGATAAGGTGGTTTCTTTAGGGATCGGTTTGCCCACTTTACCAGCTTGGAGTATAACTTTTGGCCGTCGCGGTTGCCAGTACAGGCATTCTGAAATAAAGTAGCCGATAGTGTAAAACGGTAATAAAATTAAAAATACAGGAATAAGCAGTAAATATACCCATGCCGTTGGTGCATTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 62567-62775 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHQ01000030.1 Gilliamella apicola strain Occ3-1 Gilliamella_apicola_Occ3-1_contig36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 62567 29 100.0 31 ............................. AAAAAGGAATGACTAAATAGAGCATAAAACC 62627 29 96.6 31 ............................T ATCCATGACCTAACTGTTGCCATAATATTGG 62687 29 100.0 31 ............................. GAGAGTTTCTGCTTTTTCGCCTTGATGTATA 62747 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================== ================== 4 29 99.2 31 GTTTACCGCCGTGTAGGTGGTTTAGAAAA # Left flank : TTGATATTTAATTAACCAAATTGGGCGATTTTTAGGGGTATGTTGGTAAAACCATTCCAATCGACTTTCAACAGAAACAGGCACTGTATCGGCAGTAACTTGGCGACCAGCAATTGTCGAATTATAAACATCAACAATAAATGGTAAATCTTCTAATGTAGCATCGTGGTAAGTAATCATGTTTTTTGCTTTAAGTGGTTTAAAGTGAAATTATTGTAATTTTATTATTGTTTATTGGCAATAAAGCATATTTTTTATAGTGAGAAAAACAATGTATAGTAATATTTCACAGTTAAAATAAAATCAATTCACTAGATGGATTTTTTGAAAATACAATTTAAAAATTGCCTAAAAGTATAAAATTTAGCTAACCCTTTTTTTAACAATAAATTAAAATAAAATAAAAACAAAAAGTTAAAAACGTCTTGTAAAAAAGGGTTTTTGACAGAAAAAATCCTGTTTGCCTTTTGCAAAATGGAGTTATAGTATATTGGCTTCTA # Right flank : ACGACCCTCGGGGCTTTGGACTGCTCGCCCACGTTCACCGCTGTGTAAGTGGTCATTGCTATATAAAAACTTCAACAAAATCAAAGAGTTACCGCAAGGTTTTTTATGATTCAATAATAACTCGCCCACGAGTGATGTCGCTAATGTTTTTTTGTAGAAGTTGCAATTTGTCTTTTGTGATAGCGACGCTTACTTTTACACCTTCAGCATCAAACTCTTGATTTTCAACAATGGAATCAAGTTCCTTTAGACGATTTTCGATAATTGGCCATTCGTTATAATAGCAGTGAAATTGTAGCGTCATGCGGGCAATGAGTTCAATTAGCTCAGCTTGTTGCAAGCAGTGGCTAGCCGAACCGCCATAGGCACGAATTAATCCTCCAGTACCCAATTTTATGCCACCAAAGTAACGAGTTACCACTACAACCACTTGGTCACAATCTTGTCCTTCAATAGCTGAAAGAATAGGGCGGCCTGCTGTACTAGTGGGCTCGCCATCG # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGTGTAGGTGGTTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 22098-22665 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHQ01000004.1 Gilliamella apicola strain Occ3-1 Gilliamella_apicola_Occ3-1_contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 22098 28 100.0 32 ............................ TACTAAAATCGAAAATGATTTAATTAATCAAA 22158 28 100.0 32 ............................ ACCTTTAACCACAAAAAACACCACCTTTAACC 22218 28 100.0 32 ............................ TTTTTAATGTTAAAACCGTACCTTTTTAATGT 22278 28 100.0 32 ............................ AAAATATTAGCAAAAGGATTAAATCTTAGTTT 22338 28 100.0 32 ............................ ATAACAGATTCATCAATAGATACAACTACACC 22398 28 100.0 32 ............................ TAGATTTAGTTTTATTACCACGATTTACAACT 22458 28 100.0 32 ............................ TCCCGTTGGTCGGCTAGCCCTGCTCCTCAGTT 22518 28 100.0 32 ............................ ACAGGCTGTGCAGGTGTATTTTGTGAACCATC 22578 28 100.0 32 ............................ TTTGCTTCCATCTATAAGCTCTACAGCAATAT 22638 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 CTTCAATGCCGTATAGGCAGTTTAGAAA # Left flank : AAAGCAGATATACAGCAAAAATCATCGATAAGTGATTATGCTTTATTGATGCCTATCACAACAGTACCGGCAACGATAAAAGGCTATTTGCATTTGAGTCGTGTTAATCCTAAAGGTCAGAGTGCGTTAAGACGTGCCGAAAAAAGATTAACAGCACAAGGTAAATGGACACCTGAAGTGAAAAATAAAATGGTTGAAAAGTGGGGAAGCGTTCATTTGCAATACCCACATCTTCATTTGAATAGTAAAAGTACAGGTCAAAGATTTATTTTGTGGTTAAAACAAGAAAAATGCCCAGAGCCAGTGCAAGGCACATTTAATAGCTATGGATTAAGCCAAACAGCCACTGTTCCTGATTTTTAAATCATTAACCCTTTTTTTGGGGATAATTTTAACATATTGATTATTATTGATATTAAAATAGACTCAAAAAAAGGGTAAAAATTGGGAAAAGTGCAGTATGCTCTTTTACAATAAGGCACTATTGAGATAAAATTCTA # Right flank : ATGAGTGTTTCTAGTTTTTATTAACTGAAACACTTCATTATTAGTATTATAAAGTAACTATTCTGCGCCAATTTGCGTACTCATTTTTATCTCTCGATTATCGGTGATTTCTAAATTTGACAATACCACTAATTGAGGAAAGTTAGGCCTTAAAAATTGTGAAAGCATAGGTCTTAATGCATGGTTCACTAATAACACTGGTGGTGCACCGATAGCTTCTTGTTGGTGAATGGCTTGTTTAATTTGCTCGACAATGTGTTCGGCTAGCCCTGGTTCAACATTGCTAGTATTTTGGAGCGCTTGTAATAACAAACGTTCTAAATTGATATTTAATCCTATTACATTGATTGGCTCAGATCCAGGAAACCATTGTTGTGTGATGACTCTTCCTAAAGCAATTCTTACCATACTTAGTAGCTGATAAGCATCATTTTGGGTTGGTGCGTACTCACAGATGGTTTCAATAATGGTACGCATATCACGGATTGACACTTTTTCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAATGCCGTATAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 66813-66540 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHQ01000034.1 Gilliamella apicola strain Occ3-1 Gilliamella_apicola_Occ3-1_contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66812 29 93.1 32 ...........G.C............... CCTACAAAGCTAATTTATTTAAATTTAAACAA 66751 29 96.6 32 .............C............... AAAAATTGCACTTGGAACAAAAGGAAAAAGAT 66690 29 100.0 32 ............................. TTATCTTTCACTTTATCATAATCTATGTGTTG 66629 29 100.0 32 ............................. AATAAGAAATATAACTCTTATCTCAGAACGAT 66568 29 72.4 0 A.G...T.A..C.C.......G.....T. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 92.4 32 GTATTCCCTGTACTCACAGGGATAAACCG # Left flank : TTTGAAATAGCAGCTAATAAATCCCAGATCCTGATTGTGAAGTACGTATTGCATGCCTTATAGAACCACTATTACCACCTGATGACATTTTGCCTCCAGCAATCCCAGAGTTTAAATCACTTGCCGATCCTCTAATGAGTATGTGTTGTTGCTGAGAATATACCACCTAGACTAAGGGGCGTTTAGCTATTTGGTTATTAGAAATTAGCGCGGGAGTTTACATCGAAGATATATCAAGACCGATTAGAGAAATGATATGGCAGCAACTAATTGAATTAATTAAATACGTTAATATTATTCTTGCTTGAGCGACTAATACCGAATCAGAATTTGACTTCCAAACCTATGGCGAAACAGAAGAGTTCTGGTAGATCTAGATAGATTAAGATTGGCCTTTTTTATCTTTTAAAAATCAATAAATTAATTTTCTTTAAAAAAATAAAAAATCTGGTAGAATTTGACAAAAATATAAATGTAAATAAAACAATTATCTACATTTA # Right flank : CTTGATGATATGAAGTTGATATTAGCAGATAGCTTTGTTCTTTTAGGAATATGCCGGATTATTTACATTTCATGGTTAAATAATCTTCTGAAAACTCATAAGGCATTTTTTCCTATGTCTTTTAACCGTATTATAAAAGTGAATAAATCTTTAAGCTTTTGTTTCTATCTTTTGAATCGCTAAATATTTACTGATTATATTTCACCTCTCCTTTAACGTATGTATCATGCTTTTCAACTTTTCTATTTGTTTTTTTGTAGATTGGTTTAGTGAATTTTTGATTTATACGATGGTCCTTACAGGTTATTAACAAATAAAATACCGCAAAGTTTAAATTAATCATTAAACAGTATAGACTATTGAATGTTTTTTTACAAAAAAATAACGTAAAAAATAAATAGTTGAGAAAATCTCCTACAAGTGAACACACAATTCACGTAAAATTACTCTGCCTCTTTTGTAATAAAAAACATGTTATTTAATGTTTCATGAGGTTCTTT # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCTGTACTCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //