Array 1 1365678-1366045 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073365.1 Paenibacillus tritici strain PH55-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1365678 33 100.0 34 ................................. GCCCATACCGTGGCTGCCGTGCAAAAGCCCATCC 1365745 33 100.0 33 ................................. CATATCAGCAGCCAAGCGTTCGTAGTTTTTTTC 1365811 33 100.0 34 ................................. TTAATGGGGACGAAGCTCATACGTTTGTAGCTGT 1365878 33 100.0 35 ................................. GGCAAAGATGCGGTCGTCATTGATTTCCATCACGT 1365946 33 97.0 33 ....G............................ AATTTATGCGGCGAGCTGGTCAGCCATTTCTGC 1366012 33 90.9 0 .......ACT....................... | A [1366037] ========== ====== ====== ====== ================================= =================================== ================== 6 33 98.0 34 GTCGCACTTCGTGTGGAGTGCGTGGATTGAAAT # Left flank : GTCTAAGAGTTATCGTTAGTTCCATTATTAGCTTAGTAGCTCTGATCTCTAGCAGTCCGTGTGGTTCAGAATTTATCGGGATTCTTAATCCTAATGGACGCTACTTCGCCGCATCTTTTACAAAATGTATATATAACCGGAGAACCGAAAGAAAAAGTTTTGCCTACTGGCATAACTCTAGCGTCAACAGCGTTAACTTCACCTTTTGCAAAGGTAGTATATCCACAGGTTTTACAAGTTAAGTTTTCCTGATTCATAATAACCATCCTCAATGAAATATTTTACAATATGTGTGGAGTAAGATAGGAACTGATAGCTGGTGCGAATGCCAAGCTCTTATGAAATCCCCGGGTTCTTCGCACCTCGGAATTTGTCGAAACACAATTGAGTTGAGAACGTTTATAAAAAGTCAACAATTGATTCATATCCTTTATTGTACTATATTGGCAGAAGAGTAGAAAATTAATATGGAAAAGGCATAGGTCATGCTGATTTCCGCT # Right flank : TAGCCAGAATATGAGGGCCGTTGCATTGGGATGGTCGCACTCTGAGGCACTATCCCGATTTTATTTGGAAAATGTAGATCCGTTAGATTATTTGGGGGTGGACACGAGCTGGAGGGGTGGCCGAACTGGCTGTTAATTTTAGTAAAGAGAATCCCGCTCTAACTTTAATTGAAGCTATCGAAAAGGCAGAGAGGAGGCAAGAGATTACATAGGTGTATGAAGGGCAAATATAGTTTTGCAGAACACAATCAGTGGAGTAAGATAGGAACTAAGGACTTGTGCGAATGCCAAGCTCCCATGAAATCCCCGGGTCTTTCGCACCTCAGAATTTGTCGAAAGCATTAGAGAAAATGAGAATTTATCAAAAGTCAATGATTGATGTATACTTTTTTTAGTACAGTCTGATGAAAAGATAGTGAATTGATGCGGGGGAAGCATAGATTATGCTGATTTCCGCTGTCGCACTCCACACGGAGTGTGTGGATTGAAATGTTCTTGCG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTTCGTGTGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 2 1366503-1367472 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073365.1 Paenibacillus tritici strain PH55-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1366503 33 100.0 35 ................................. GTTCTTGCGCAGCTTTCTCTTGCGCCTCCAGAAAG 1366571 33 100.0 33 ................................. CTAAACAAGTTGGCGAAGAGATTGGTGAGCGAT 1366637 33 100.0 32 ................................. GCCAGCCAAGTCACCTTAAGCCAACCATTACC 1366702 33 100.0 35 ................................. TTCAACATACCTACGGATAAGGACGATCCTGACGC 1366770 33 100.0 35 ................................. ACTCTGGCGATACTCCAGAGGAGTTGATGAAATAG 1366838 33 100.0 35 ................................. GATTGCCAAGATAATCCCTCCTTAATTCATGGCTC 1366906 33 100.0 34 ................................. TTTTTGGAAAAGGAATGGTTCTCCCCGGTGCCTG 1366973 33 100.0 34 ................................. CCTCACCCCATAAAATCCTTGATGGGTATAAGGC 1367040 33 100.0 35 ................................. AATCGGAGTCCGGTAGCCATGTTACAAGTTACCTC 1367108 33 97.0 35 ......T.......................... TCCGCAGCTCGCTCCGTCTTGGGCAATGGGAACCC 1367176 33 100.0 33 ................................. AATAATAACTGTCCAAGGTGGGTACGCGCCCAT 1367242 33 100.0 34 ................................. ATATTATCTAAGGGGGGATAACCATGAACTGGAA 1367309 33 100.0 33 ................................. AAAAACAACCAGCATAGCAGGCCGTGGGTGAGA 1367375 33 100.0 32 ................................. ATGATGGCCTGCTGAATCTCATCAGGTAGAGC 1367440 33 97.0 0 ...........T..................... | ========== ====== ====== ====== ================================= =================================== ================== 15 33 99.6 34 GTCGCACTCCACACGGAGTGTGTGGATTGAAAT # Left flank : CATTTCTGCGTCGCACACTGTGTGGAGTGCGTGGAATTGAAATAGCCAGAATATGAGGGCCGTTGCATTGGGATGGTCGCACTCTGAGGCACTATCCCGATTTTATTTGGAAAATGTAGATCCGTTAGATTATTTGGGGGTGGACACGAGCTGGAGGGGTGGCCGAACTGGCTGTTAATTTTAGTAAAGAGAATCCCGCTCTAACTTTAATTGAAGCTATCGAAAAGGCAGAGAGGAGGCAAGAGATTACATAGGTGTATGAAGGGCAAATATAGTTTTGCAGAACACAATCAGTGGAGTAAGATAGGAACTAAGGACTTGTGCGAATGCCAAGCTCCCATGAAATCCCCGGGTCTTTCGCACCTCAGAATTTGTCGAAAGCATTAGAGAAAATGAGAATTTATCAAAAGTCAATGATTGATGTATACTTTTTTTAGTACAGTCTGATGAAAAGATAGTGAATTGATGCGGGGGAAGCATAGATTATGCTGATTTCCGCT # Right flank : TTCTCTAGCCGCAGATCCTGTACTGTTAAGGGCTGGTCGCACTCCCTAATCTAATAGTCGCCTGATTTGGATCATAAGCAAAAGCACTGGATTTCTGCGTAGCCGCAGGACCCAGTGCTTTTTTGATCATAGACTATTTTTTACGGCGTACCTCAAATAAATCGTTAGGAGTGACATCGAAATAGAGACATAACTTCATTATCAATTCTGCGGATACTATCTTCTTGTCCATGTTGGAGTTGTGCATTAATTTCATAATAGTTGTTCGACGGTTCCCAATTTCTTTGGAAAGTTTAAGGACTGAGATTTCATGCTCCTTCAGAATTTAATCCAACTTGCAATATAGTATGTATTTGTTAAATTCCATGCGGCTCTCCAAAACTAAAATTAGTTGTACTTTTTATGAAAATGAAATTAGTGCCACTAACAAGGAAACGAAGGAATGTATATGTCTAAAGGCTACTCTTCAACTTCAGATTTTAAGACTATGTATAGTCTTA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCACACGGAGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.40,-10.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 3 1368406-1369828 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073365.1 Paenibacillus tritici strain PH55-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1368406 32 100.0 34 ................................ GTCAATCCCACGATATTCCCCAACTGCCATCAGA 1368472 32 100.0 34 ................................ TCCTGCACAGCTCCAGGTGCATCCTCGTCAAACA 1368538 32 100.0 33 ................................ CTGTCCGCAGTGTCCGCCGAAGTGTAACCCCCA 1368603 32 100.0 35 ................................ CTCACAATTGGGGGTCCTCGCGCCCCCGCCTGAAG 1368670 32 100.0 34 ................................ AAGAATCTCGCAAACATCCTTAGAGCCGGCAGTG 1368736 32 100.0 34 ................................ GGCATCTTGCTGTAACTCCACGCCGTTGACTTTC 1368802 32 100.0 36 ................................ ACTGGTGATCGGATGCTCTGAATCGCTGCCATAACC 1368870 32 100.0 34 ................................ ACGCACCGCGAATCACCCCCGCGAACCGAGCCAC 1368936 32 100.0 33 ................................ GTAGTTCTTTTCGTAAATCCGTAACATGATTAA 1369001 32 100.0 35 ................................ ATGGCCTACGAAATGGGAGACCACAATTGGCACAT 1369068 32 100.0 33 ................................ GTAATCAAATTTAATTAGGAGTGAATTTATATT 1369133 32 100.0 34 ................................ GGGAAGGGTAAGAACACCACGGCTGTGATTAAAA 1369199 32 96.9 34 ...................T............ CGACTTTGGCCACTGGGGATTAACCGATGAAGCA 1369265 32 100.0 36 ................................ AAGTCGAACGCCGTTTGCCTGCATCGCTCGGGCCAC 1369333 32 100.0 33 ................................ GCAAATGGTGCGGGTATTACCGTCAAAAATGCA 1369398 32 96.9 36 ....................A........... AACACCGCCGCGAGGCGGTTTAACATATGCTTTAAT 1369466 32 96.9 32 ...................T............ ATCCAGCGCTGGTCGATGGCGTTCTCTTTGCC 1369530 32 100.0 34 ................................ CACTGCCAAGTTGACTCTCTAGGTGAGACGGATT 1369596 32 96.9 35 ...................T............ TTGCTGCCTGGTTCGTATAGGTGAACCTGGGGCCG 1369663 32 96.9 35 ...........C.................... GGGCAACTGCGGAAAGGTATCCGAGATATGGCGAA 1369730 32 84.4 34 .........CG.GT.......C.......... GCCTCCAGATAAAGCGCGTGCATACCCTTTTCAG 1369796 32 75.0 0 ......T..CG..G.....TA..A.......A | T [1369809] ========== ====== ====== ====== ================================ ==================================== ================== 22 32 97.5 34 GTCGCACTCTATACGAGTGCGTGGATTGAAAT # Left flank : ACGAAGGAATGTATATGTCTAAAGGCTACTCTTCAACTTCAGATTTTAAGACTATGTATAGTCTTAAGCCAATTAAGGCATTAACTCGATTTATGTGAAAAATGTAGATACGTTAGATTATTGGAAGCGGATATAAGTTGGAGGGAGGGCTGAATTGGCTGTTAATTTAAAAAAAGAGAATCCTATTCTAAGTTTAATTGAAGCTATTGAGAAGGTAGAGTGGAGCAACGGGACAACGTAGGATTCGGAAGTAAGGGGGAGTAAAAAGTAAATTAGTTTTGCAGAATTTAAGCTGTGGAGTAAAATAGGGGGTAGACTGGTGCGAATACCAAGCTCCCATGAAATCCCTAGGGATTTCGCACCTCGGAATTTGTCGAAATCCTAAAGGTATGAGAGGTTTCTTGGAAAGTCAAGGGTGGACGCATACTTTTTTAAGAATAGAGTTAAGGAAGATTCAACGAATTAATATGGGAAAAGCATAGATGATGCTATTTTTCGCT # Right flank : AATCCAGCAATCGAAACGCGAGCGTACAATCACATCGCATTTTTACAAAAAGCATCCAACATTGATTCCATGTTGGATGCTTTTTCTCTAGGCTTTGATGGTAAATGTGATAAAATGTTCAAATTATCACCAAATTATGACTCCCTTTTCACAAAGAAATTGTTATGATGGGAGGGTGAATTCCTTATAGTGGAAAAGACCTAGACGAGGGTGGAGGTAGGATGGACTACATTGCTCATATCCGTGAAAGTGACGGGTGCATTCAGACGGTGAATGAACATTTGTTGGGTGTCTGTGCATTAGCCGAAAACTTCGGTGAGAAATTGGGAGTACGGCATATTGCGGGACTGGCTGGACTCTTGCATGACCTAGGCAAATACACAGAAGAATTCAGAACATACATACTTGAAGCAGTTAATAACCCGGATGCTCCACCCAGAAGAGGCAGTGTGGACCACTCGACAGCTGGAGGGAAGTTATTGTTTGACTGGTTTCATCCC # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATACGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1377673-1378969 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073365.1 Paenibacillus tritici strain PH55-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1377673 32 100.0 37 ................................ TATGGTCCCCCACATCTATCGGCACCACCTCCGGGTC 1377742 32 100.0 32 ................................ ATCAACCCATTAGCGCCGATTCCGCCAGCCAG 1377806 32 100.0 34 ................................ ATCTATGGGTTAACCTCCTTGAGGGGAGGGGCTT 1377872 32 100.0 37 ................................ GGAATGACCCGGGATGTAATGAGGACCGAGATTAGCC 1377941 32 100.0 35 ................................ AACGGGCGGGGCTTGGAATCGTACTGGTAATTCTG 1378008 32 100.0 34 ................................ ATTACATTTGAAGGGGTGTTTTTATGTCTGATAA 1378074 32 96.9 35 ....................A........... TACTATTCCACCGTAATCATTGATACGACCTTCAG 1378141 32 100.0 36 ................................ TCCGATGACCATATTGCCCTTCGTATCCGTGCACAT 1378209 32 96.9 34 ....A........................... ATGGTGTACCTCCTTGGAAGTATTATCCTTTATA 1378275 32 100.0 35 ................................ GTTACGGTAACGTTACTATTTTTTCTTGCCGTCTC 1378342 32 93.8 35 .............T.....T............ ACATAACGTCCAAACTCCGTATTAGGCGGAATTTC 1378409 32 93.8 36 .............TG................. CGTTGGAGCGCTCCGATATAATGGCGGATAATCCAT 1378477 32 100.0 34 ................................ ATTTCATAGCAGCCGAGTGCGACCGCCACTATAC 1378543 32 96.9 34 ...........A.................... CGTATGTATCCAGTGGATGCATTTTCAATCGATC 1378609 32 96.9 33 ............A................... TTATCCTGTCGGAACTTGTATTCTGGATGCCAG 1378674 32 96.9 35 ........................G....... AACCCCCCAATCAATCACGCGATAAACTTTCCCAT 1378741 32 93.8 33 A............T.................. CTCCCTTAGTGGGAGAGGAGGGATACTCCTACT 1378806 32 90.6 34 ..T................T.......A.... CATCGACTTCACGTAGCGCTTGTTCACAGTCAGC 1378872 32 96.9 34 ............A................... TTTAGCTGCTCATCCTCTATAAATCTCCTTGGTT 1378938 32 84.4 0 ..........A..T.....T...A.G...... | ========== ====== ====== ====== ================================ ===================================== ================== 20 32 96.9 35 GTCGCTCCTCGTGCAGGAGCGTGGATTGAAAT # Left flank : CGTAATGATCTGGATGAATATCCGCCGTTTATGTGGAAGTAGGTGTAATGAATGCTGGTGTTGATAACTTATGACGTAAGCACAACCAGTAATGCAGGGCAAAGCAGGCTGCGCCGGGTGGCTAAGGTCTGTCAGAATTACGGGCAGCGTGTTCAAAACTCGGTGTTTGAATGTATCGTAGATGCCGCACAATATACTGAGCTTAAGCTAAAACTGAAGGACATTATTAATCTGAAAGAGGATAGCCTCCGGTTCTACCAGCTAGGAAATAACTATAAAAACAAAGTTGAGCATGTGGGAATAAAAGAGTCTTTGGACCTTGAAGGACCTCTGATTCTATAGTGCGAATGTGAACCTCACATGAAATCCCCGGGAGATTCGCACCGGGTTTATAGAAATAATTGTAAATTTATTATGAGATACTGATGCGAAATTGATAAACTGTGTGATTTTTCGAATGAATATAAGGATTATTTTCCTTATTTTGATGGAAAATCGCT # Right flank : TCATCAGGTCGATGAGCTGGTGTACCTCTTGTAGGTGTCGCTCCTCATACAAGCCCCCCCCCACCCATTAGTACATATCCCCCAAGAGAGTATCCGACCCGGCCCCTGGCATGTTAAAATAGGAGAAATGTGTACATCGAAATGTGTGAATCTTATCTGGGGGCGGCAGGTGAAAGCGTTGAGATTAAGAGATTTCATGGGCCCTTCGGATACGTCTGCTCACCGGCAGGCCCGGTGGATCAAGCGGTTTCTGTATACCTATTGGCTTGTGATTGCGCTGCATTTTCTGGCTCAGTTGGGGGCTTTTTGGTGGCTGGCTTATCCCATGGGGCCGAAGGAATTTTACTGTGAGGTGCTGTTGTATCCGACACTTCTGATGAGTGCGGTTGTCGGGATTACGCAGCTTGTGGATTATGCAGCACCGAAGTATTCCTTCGTGCTGCTGTTTGTAGCGGGGACGATTATAGCCATGCTGATCATTCATCTGAATATGGATATTC # Questionable array : NO Score: 8.80 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGCAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //