Array 1 95027-94147 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSYW01000025.1 Klebsiella pneumoniae strain C5-E1-13 NA-C5_S90_R1__paired__contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95026 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 94965 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 94904 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 94843 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 94782 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 94721 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 94660 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 94599 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 94538 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 94477 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 94416 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 94355 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 94294 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 94233 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 94175 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCAGCGGGGATAAACCGGAACCTGAATTCGAAGGGTGGGTCATCCTTCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGGACCCCGAGCGACCCGGTCACCCTCCGACCTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGTCGAACGGCGGTTATATCCATCTTGAGTCGTGTTCCCCGCGCCAGCGGGGATAAACCGACCGATCCCACAATTGCGGCGGTTGAGATTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTGGTAATTACTGCTGTGTGTTACGGATAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGATTGTCTGGCGGTCGAGCGCCATTTGCTCGTGTTCCCCGCGCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCAGCGGGGATAAACCGTTAATACCAGGGGGCAGGTTCAGCAGGTCCCC # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 96758-95203 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSYW01000025.1 Klebsiella pneumoniae strain C5-E1-13 NA-C5_S90_R1__paired__contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 96757 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 96696 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 96635 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 96574 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 96512 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 96451 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 96390 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 96329 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 96268 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 96207 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 96146 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 96085 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 96024 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 95963 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 95902 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 95841 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 95780 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 95719 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 95658 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 95597 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 95536 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 95475 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 95414 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 95353 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 95292 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 95231 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CCGATTGTCTGGCGGTCGAGCGCCATTTGCTCGTGTTCCCCGCGCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCAGCGGGGATAAACCGTTAATACCAGGGGGCAGGTTCAGCAGGTCCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGCTTTAACCCGCTCCGGCAGATCCGGGTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCTCCGCTTTCAGGGTGTGGCTGATATCACCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCGCTGCGAATTTGTTGGTCGATTTCGATCTGTGTTCCCCGCGCAAGCGGGGATAAACCGTGGGTAGAGGTTAACTGGTTATTGGTCATTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTGGTGTTCCCCGCGCCAGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //