Array 1 15183-13954 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPIB01000025.1 Escherichia marmotae strain 12b_Esco_HA-NL 127220O_contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15182 28 100.0 32 ............................ GAGATGTTCCCCTGGCGGCACCCGGTTTTATA 15122 28 100.0 32 ............................ TGGTGAAAAACTTTCCCCTCGGCCTGCCAGTA 15062 28 100.0 32 ............................ TCAACCGCTACGCCTCCCGCATGGAAACTGTC 15002 28 100.0 32 ............................ ACTGTCCGCGATAATTACTGATTATTAAAATG 14942 28 100.0 32 ............................ AGCCGAAATAGAAAATCGCTCGTTTGTATTCC 14882 28 100.0 32 ............................ GCCGTTCGATATTTTACGCCCGCAACGCCTGT 14822 28 100.0 32 ............................ ATCGCCCCAGCAATACCAGCAGCGGCTTTCTG 14762 28 100.0 32 ............................ CAGGTGAGCCGCGATACGACCGCGCAGACGTT 14702 28 100.0 32 ............................ GGTACGCCGTTGCTTGCCGCTGTGGTGAGACC 14642 28 100.0 32 ............................ TTGACCGTGCGCGGGTTCAGAACGCCGTCGTC 14582 28 100.0 32 ............................ ACACGCAGGAAGAGATCCGCGAGGCTATCAAC 14522 28 100.0 32 ............................ CTGCGCAACATCCACGCCGCGCCCGGTGATGG 14462 28 100.0 32 ............................ ACGAGGTGACCTGGAATAACGCCGCAGTAAAA 14402 28 100.0 32 ............................ TTGACCGTGCGCGGGTTCAGAACGCCGTCGTC 14342 28 100.0 32 ............................ GCAGTCGCAGCGGCAGAGTAATTGCGCGTTTC 14282 28 100.0 32 ............................ AGCAGTTCAATCGCTGGCTCAGGCGTCTGAAT 14222 28 96.4 32 ................A........... AGGAGCATTTGCGGCAAGGCCTGGTTGTTGCT 14162 28 100.0 32 ............................ ACGACGCTGTCGCGCTGGCGTCGGCGTGGAAC 14102 28 100.0 32 ............................ AAAGTTAAAATCATAACTCAGGTTTTGAGGGA 14042 28 100.0 32 ............................ AGCATCTGCATGGTGCCCGTGGTCTTAACAAG 13982 28 89.3 0 ..C.................T...C... | C [13959] ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCACAAAGCGGAAGCAGCGCATTAATCTGGGGTCGTGAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCTCGTAAGAGGTTACGGATTTTTTTGTTTGTGAGGTGGGGCGGTAAAAACCCTATTTTTGAGGGCGAAGGTAATTTATTGATAATTAATGCTGCTGGAAGGCAAGGATAAAAAAGGGGCTGGACAAGGAATTTTGCTGGTTTCGCTTTATTAACAATGGGCTAAGCGTGTAGTATTTGA # Right flank : TACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAGTATGTCACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACGTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCTGGAGTGATGGTTGGTTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 21979-21230 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPIB01000048.1 Escherichia marmotae strain 12b_Esco_HA-NL 127220O_contig_48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 21978 28 100.0 32 ............................ GCAAAGGGTTTTCGACCATTACCCAGATAATT 21918 28 100.0 32 ............................ GGAGACGATATCCGTAGCCGCAGACACAGCAG 21858 28 100.0 32 ............................ GATGTGGTGAGAAAGTTGCTCCGCCAGAGTGT 21798 28 100.0 32 ............................ TAATCTCACTGCTACTGTGCCAGCAACTGGCG 21738 28 100.0 32 ............................ GCAATAAACCGTTTGCAACACCAGAATGGTGC 21678 28 100.0 32 ............................ CGTAGGGACGCCGTAACCGCCGATTACATAGT 21618 28 100.0 32 ............................ TGTACCTGCGCTTGTTGCAGCGGGTGCTACGG 21558 28 100.0 32 ............................ ATAGTGCGCAACGTGCGGGAGTCCATACAGAT 21498 28 100.0 32 ............................ CCCAGATAGTTGATAACTTCGTCGCTGTCAGC 21438 28 100.0 33 ............................ CCAGCCAGCATGATTCCGCGCGTTAATGTTGGA 21377 28 100.0 32 ............................ TGACGTAATAAATGCAATGCAAATGCTCGCTT 21317 28 96.4 32 ...........C................ TCGCTCCGCCAGTGCAACTGGTAATAGAGTGC 21257 28 89.3 0 ....................T..TT... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GACACCTCACCAAATTGTTTTGCTGCCTGACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATAGAGATTGATTCGTTTGGTTACGCAATGAACATGCTGTTTGCGTGACGGAGATTATGACCGTATGTGTTCTGTTTAATTGTTTATCAAAAACTATGCAGAAAATATGAGATTGAAGAAGTAACAAATCGACCCTTTTTTTAGGTTGAAATGTAACTCATTGATTTTGTTTATTGCTATTTTGAAGTCTGGAAAAAGGGGTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCAGTTCACTGCCGTACAGGCNNGTTCACTGCCGTACAGGCAGCTTAGAAAAGCACCGTCAACCTCACCCACCCACGAAATA # Right flank : ATCCATACCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAAAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //