Array 1 1867-1289 **** Predicted by CRISPRDetect 2.4 *** >NC_013888.1 Methanocaldococcus sp. FS406-22 plasmid pFS01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 1866 31 96.8 36 ..................A............ ATAACACATGATATTAACAAATAACTTTCTAAAATG 1799 31 96.8 36 ..................A............ CTCTTATCAGCATTTATTATTTTTTCTATTGGTTGG 1732 31 96.8 36 ..................A............ TAGAATTCCTTTTGATTAAATACATCGTAAAACTGC 1665 31 100.0 37 ............................... TATTCTTTTAATCTACTAAGGTATATATTTACTGCGT 1597 31 100.0 39 ............................... CTAACTACATCGTCTGTAACTTCTTTAATTTCCTTATCA 1527 31 100.0 38 ............................... TTCAATTAAAAAGCTCTCTAACTCTTCACTATAATCGT 1458 31 100.0 40 ............................... TTACCCTAAACAAAGCTGTAGCTGTATATAAATATTTGTT 1387 31 100.0 37 ............................... CTTTTAGATAACATTTTTGTAATGCTGGAACTATAAA 1319 31 87.1 0 ........A..............G...G..T | ========== ====== ====== ====== =============================== ======================================== ================== 9 31 97.5 38 GTTAAAATCAGACCTCTTGGAGGATGGAAAC # Left flank : TATAGTGTTCAAAAAAATTCAACCTGCACTTAAACAATATGATTTAGAAAGAATAATTTAAAAAGAACAAAAATATTTATATGGGTTTTTTGATATTTTTATTTGTTTGATTTAGTTGTTTATTGTAGTGTTGTGGCTGTCTCGCCGAATGAACTTTGAATTTAATAAAGGTAATAACTATTTGATATTTGCTAATTTAGAGGATTTTTATTTAATTTCTAAGGATATGGTAGTTTGATTATTCGGAATATTTAGGTTTATTAAATCATTTAGATTTTTAAAAGTTAAGGTTAAATAATAAGCTAAATAAAATTTCTCCAACCAATAAGTTAAATCTTCAAATTTAGAAATATAAAAATCCTCTATTTTGTATATAAGAAAAAAGCTTATATAGCGTTGGATTTATAAATAAAAGATGTCATCTATACTTAGAAAAATATGGTTCCAAAAAGCTTAAATATAAGAATGGTAATTAAAACTATATTGTCGATGATTGCCCT # Right flank : TGGTTTTCTTTTTTTGTAATACATTTTGTTTCATTAATGAAATTTAAGCAGTTCCTATTTTAACACTGCTTATTACCCTCATACTGGTTTTTTATAACGAATTGCATTTGTTTAAAATAGGTTCGAAGGAGGGGTGGGTTAATCAACTTTAAACTTCTAAAAAATCTTGCACTTAATCAAGCAGTGGCATGATAAAAACACCAAATATGTATGTTAAATAACTTACATTTTTAGTGTCCGGAATTTTTTAACCAAAGTTTGCCTTTGAGGCTAAAGACCAACACCACCACACATAATAATAGCAAAAATTGCTTAAACACACATACTGAACTTTGGAGATATCTTAATAGTTTATATACTTTTAAAACAATTTAATCATGCCTTTAGAAATATAGAAAAATAGAAAGGTAAAGCCCCTAATGGTGTTGCTATGAATGATAAAATAACCTATTTTATAGATAACACAATTTCCATAATAAAATTAACTCTTATGACTTACT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTCTTGGAGGATGGAAAC # Alternate repeat : GTTAAAATCAGACCTCTTAGAGGATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.40,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 60377-59814 **** Predicted by CRISPRDetect 2.4 *** >NC_013887.1 Methanocaldococcus sp. FS406-22, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================================================================================================================================================== ================== 60376 26 100.0 42 .......................... GAAACTAGCCATACTTACAAATATCGCCTCCTTCCCATCCTT 60308 26 100.0 47 .......................... GAAACAACGTATCTCTATCAACAGCCTGCATTAAAAATCCTCCACAC 60235 26 96.2 55 ......................T... GAAACTTCTTCTCTACTTAATTCTCCTCCTCCAACACTTCTTATTACACTAAATA 60154 25 96.2 42 ....................-..... AAACCTTGGTATTTGTTTCTCGATTTTGGTGTAGATTTGTGC 60086 26 88.5 170 ..................A....T.T TTCTCTTTTTAAACCATTAAAATCAAAAGTAAAAAAGCTATTTTTATCTCTTACTTAGTAATACTTATACATCTGAATATATAACAAACTATTTAAATTAGTAATACCAAAAGAGAAAAAATCCCGAGAAAATTTTTCAGTCAGTATTAAGAATTATTACAAATTTAGAT 59888 26 76.9 17 A......C.T..A.....A...A... TTTTTAATGTCTATTTT Deletion [59846] 59839 26 76.9 0 ........A.A.TT.....A.....T | ========== ====== ====== ====== ========================== ========================================================================================================================================================================== ================== 7 26 90.7 62 GTTAAAATCAGACCTCTTGGAGGATG # Left flank : ATTAAAGGTAGAGAGCATTTTGAAAGAGCTAAGATTCCTGATGAATGAAAACTCTACAGACAAATAAAAAGTTTTATATATTTTTACCTGCTAAAATTTTATTTGTTTGATTTAGTTGTTTATTGTAGTGTTGTGTTTGTCTCGTTGGATGTGTTTGAAATTTAATAAAGGTAATAATTATTTGGTATTTGTTAATTTAGAGGATTTAAGTTCAATTTCTAAGGGTCTGTAAGTTTGATTATTTGGAATATTTAGGTTCATTAAATTATTTAGATTTTTAAAAGTTAAGATTGAATAGTAAGTTAAATGAGATTTCTCTAACTAATAAGTTAAATTTTTAAATTTAGAAAGATAAAAATGCTCTATTTTATTGATGATAGAAAAGCTTATATAGTGTTGGATTTATAAATAAAGGATGTTATTTACCCTTAGAAAAATATGGTTCCGAAAAGCTTAAATATTAGAAGAGTGATTAAAATTATATTGTCGATGATTGCCCT # Right flank : AAAAGAGGACAAAACTTAAAATAAAAGCCAACTTGATATAAAAGCTCTTTTAAATTTAGTGTTTCAAAGAAATCATATAATTTATCTATCCAAAAATTCCCTTTATAATCTCCAATGCCCTTTCTATATCTTCATATTTTGTAGCATAGCTAAATCTAATATAATTAGCTCCATTCTCACCAAATGCAATACCCGGAACGCATAAAACCTTATTTTCAATCAACTTTTTAGCGACCTCTACACCATCTCCATACTCAGATACATCTGGGAAGATATAAAATGCCCCCTCTGGCTTATTAACTTTAAAGATATCCTTTAATCCATTATAAATCAAATCTCTCCTCCTTCTGAACTCATTAACCATCTCTTCAACACACTTCTGGCTACCTCTTAAAGCGGCTAATGCTCCATACTGAGCAAAGGTTGTAGCACATGCAAAGCTATACTGATGGATTTTTATCATATTGTTGATTAAATCCAACTCTTTATTTAGCTCGTCT # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:-2.79, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTCTTGGAGGATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.69%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 150765-149917 **** Predicted by CRISPRDetect 2.4 *** >NC_013887.1 Methanocaldococcus sp. FS406-22, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================= ================== 150764 31 100.0 38 ............................... CTGCATCAACCGCTTCAACAACTTCTGACAACCTTAAC 150695 31 100.0 36 ............................... AGCAACGAATAGGGATAATCAGAAATTTTATAGCAT 150628 31 100.0 38 ............................... CTCCACAACGTGTTTAATGATGGTTCATCATACCTACT 150559 31 100.0 35 ............................... ACAACAATCAAAACCCAATAGAGCTTATCATGCAA 150493 31 100.0 35 ............................... CTTTAATATTGGTGCGTCCGTCCTTTTGGGTTCTT 150427 31 100.0 40 ............................... TAAAATTGTTTGATTGTTGGTGTTTCGAATGATAAATCTG 150356 31 100.0 41 ............................... CAAATGGCTGGAACAAATGTTGCATATATTGTTCCATTAAG 150284 31 100.0 38 ............................... AAAGATGTTCTAAAGTATGTAAGTGGTATAACAGATGT 150215 31 100.0 37 ............................... TTTTCATCATAAACAGCAAAGTATAAAATTTCTTTAG 150147 31 100.0 40 ............................... TTGAGTTTTTTCACTTCAGCTTTTACATTCTTTATGATTT 150076 31 100.0 35 ............................... ATGCATCTAAATGCATCATTACTACTATTATACAT 150010 31 100.0 32 ............................... GTTACCGTCTGGAGTTACTATTGGAACTTCTG 149947 31 80.6 0 ..................A....T.TT.TT. | ========== ====== ====== ====== =============================== ========================================= ================== 13 31 98.5 37 GTTAAAATCAGACCTCTTGGAGGATGGAAAC # Left flank : GTCATCAATACCAATAAACATTTTGCATCACCAAAAAATTAATGATGTATATATACGCTTAAAAGTCCTGTTCAAAAAGCTTAAATAACTTTACAAATTTATTATTTGTGTTATTTAGGGATATATGTTGTTATGTTTGTCTCGTTGAATGTGTTTAGAATTTGATAAGGTTAATGATTAATTAGTATTTAAGGATTTAGAGGATTTAAATTTAATTTCTAAGGGTTTGTTGATTTAATTATTTGGAATGTTTAGATTTATTGAATTATTTAGATTTTTAGAAATTAAGATTGGATATTTAGCTAAATGGGATTTCTCTAACTAATAAGTTAAATTTTCAAATTTAGAAAGATAAAAATGCTCTATTTTATTGATGATGGAAAAGCTTATATAGCGTTGGGTTTATAAATAAAGGTAGTTATTTGCCCTTAGAAAAATATACCTCCGAAAAGCTTAAATATTAGAAGAGTGATTAAAATTATATTGTCGATGATTGCCCT # Right flank : TCTTTTTAAACCATTAAAATCAAAAGTAAAAAGCTATTTTTATTCTTAAACTCAGTAATACTCACACATCTAAATATACAACAAACTATTTAAATTAGTAATACCAAAAGAGAGAAAATCCCGAGAAAATTTTTCGACCAGTATTAAAAATTATTACAATTTAGATTAAAAAATCCTGAACTCTTTGGAGGATGAAAAGATTTTGTAGTTTTATAATCATGCTCTTTAAGATATGGATTATTTCTTTTTGCTTACTTTAATTTATATTCTCAAATTTATAAATTACAAAAACTTTTTATAACACTCTTAATATTTCAATAACAAACCACAAAGCCATGGAAGAGGGATAGGGTGTCAAATGAAGATTTAAAGCTAAAAGTAGCTAAGGAAGCCGTGAAGTTAGTTAAAGATGGAATGGTTGTTGGATTAGGAACTGGCTCAACAGCGGCTTTATTTATAAGAGAGCTTGGGAATAGGATTAAAGAGGAAGAGCTAACAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTCTTGGAGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.40,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 321361-322388 **** Predicted by CRISPRDetect 2.4 *** >NC_013887.1 Methanocaldococcus sp. FS406-22, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 321361 30 100.0 32 .............................. TATGTTAGAGATGCCATATAACAATATGACAC 321423 30 100.0 34 .............................. CCGTATCTACATAATTAGCCCTTGGTATTGTTGA 321487 30 100.0 33 .............................. GTTTTTTCTCTCAAGTGCTCAACAATCTCTCTA 321550 30 100.0 38 .............................. AAACTTCCACCACATCCATTAATGAAATAAAACCCAAG 321618 30 100.0 37 .............................. AATGTAAATGTTTATTTAGATGAGGATTATGTTGGAA 321685 30 100.0 35 .............................. AGTAGTTCATAGCAAAAATGACACTACTGCGGAGA 321750 30 100.0 37 .............................. TTGGGGCAGGCGGGATAATAGGCGGTGTCGACGATAG 321817 30 100.0 40 .............................. AACATTGAGAGTAATAGTTCCAGCTAACGCCCAAACAATC 321887 30 100.0 42 .............................. AATTTCTATTTAATCTCTTTCCTGTATAACCATAATCAATTA 321959 30 100.0 38 .............................. TTATTGCCCCACAAACTGGACATTTAAACTCTTCTGCC 322027 30 96.7 42 ........C..................... AATTCAACGCCGACAACCCAGAACTTATACTTTAATTTTCTA 322099 30 93.3 38 ........C....T................ AAAATTCTTCAAAATTATTAAATTTCTTTTTCTCCATA 322167 30 93.3 38 ........C....T................ GTGGCTTCGGTGGCTACCAAATTGTCAGTATGAAGGAG 322235 30 93.3 36 ........C......G.............. TTCAAATCTTTATCCATATCGAGAATAAATACTTCT 322301 30 96.7 29 ........C..................... ATGATACTGAACACATCTTACTACATCGA Deletion [322360] 322360 29 90.0 0 ...............T.C......-..... | ========== ====== ====== ====== ============================== ========================================== ================== 16 30 97.7 37 GTTAAAATAAGACCGATTCGGTATGGAAAC # Left flank : TAATATTAAGTTAGCAATAATCTCGAGGTTATATTTAAATATTAATTTTCATAAGGAAGAAGATAAAAATGCTTATATATGAGTTTGTTGATAATTTTGATTAAGGTGTTTTTAGTGTCTGCTATATTGTTGGAAGTTTGTCTCGTTGAATGAACTTGGAATTTGATAAAGGTAATCATTAGTTGGTATTTGTTAATTTAGAGGATTTAAATTTAATTTCTAAGGATTTGTTGGTTTGATTATTTGAAATATTTATGTCTATTAAATTATTTGGATTTTTAAAAATTAAGGTTAAATAATTAGGTAAATAAAATTTCTCCAACCAATAAGTTAAATTTTTAAATTTAGAAAGATAAAAATACTCAATTTTGTTAAAAAAGAAAGATTTAAATATTAGTAGGTTTATAAATGAAGACAGTTATTTACCCTTAGAAAAATACACCACCAAAAAGTATAAATATAAGAAGAACAATAAAAAATAGGTTGTTGATGACTGCCCT # Right flank : CTAATGCTCTTTTAAAAAATATTATTTTTTATTAAAACTACTTAATATTTTTAATAAAAATAGATTTTTATATTTAAATAAATATACATTTGGTATCTAACCCTCAAATTAATAAGCAATAAAAAGGTTTAATGTGCAATATACTATAATGTGAAACTATGAAAGTGAGAGAGCTAAAAAAGAGGGAAATCGACTTAGTAAAAGAGGAGTTGAGTAAATATGCTAACGAAGATTTTGTTAAAGAGTTTGAATATGAAAATTTAGTAATCTTAGAGGGAAAGTGGCTTACCGTTTGTTATACAAATAAACAAACAATAAGGAATTTGAATAAGTTTCAGGATATATTTTCAGTTGGCAATGTATTTGGTGAAATTAAGAGAAAGTTTCGTTTGTCTTTAGAGGGCTTTACATTAATATCTCCAAATATAATAAACAACTATGCCATTATAAATGAAAAGGGGGAAATGTTATTTTTGTATGGGAGGGATATATTTAAAGAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAAGACCGATTCGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-91.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 4 375752-376611 **** Predicted by CRISPRDetect 2.4 *** >NC_013887.1 Methanocaldococcus sp. FS406-22, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 375752 30 100.0 41 .............................. AAAATTCATTAAATTTTCAATATCATCAACGATTTCAACAC 375823 30 100.0 38 .............................. ACTATAATCTTAAACGTATTTGTGAATTTTATAGTAAT 375891 30 100.0 37 .............................. TAATACGGACCAAATTCTCCAAGAGATATAAAAACAT 375958 30 100.0 37 .............................. AACTTTTTCATGTGCATAAAATGCTAAAATCTTAGCA 376025 30 100.0 38 .............................. TGGAAATCCATCAAAAAGAATTTTTGTGGTTCTATCCA 376093 30 100.0 43 .............................. CATTAAATACGCCAGCTAATATTACCAATTCATCCTTAGACAA 376166 30 100.0 35 .............................. AACCAATTGCTGTCTAAAAATGATATTAATGTATC 376231 30 100.0 36 .............................. TTTCTTGTTGTATTCTCTCCCAAGCAATCCTCTTAA 376297 30 93.3 38 ........A.......T............. GTTTCGGGGTCTTTGAAGTTACATGTATGTGGTGTAGT 376365 30 93.3 40 ........A.......T............. TGGAACAAACCGTTTAAAACCTCTGCCTCTTCCTTTGTAT 376435 30 100.0 41 .............................. TATTAAGTCCATGACCTTCTAAATATATTATGTTATTTTTA 376506 30 100.0 46 .............................. ATTTCAATATCATCCATGTTTAGAATCAACTTTTTCTGGAATTCAG 376582 30 93.3 0 ........A.......T............. | ========== ====== ====== ====== ============================== ============================================== ================== 13 30 98.5 39 GTTAAAATCAGACCGAATCGGTATGGAAAC # Left flank : CTGTTAAAGGTTGATAATTATGAATCTTGGAGCTATAGCAATGTTTATATTTGGTGCTGTAATTTTATGGGGTGGGGCAATTTACTTTTTATGGAGGTCAATTAAGAGCAAAAATAATAAAGAGGATATAGAGGAATAACTCATGTAGAAATTATTTATTTTTAGATTATTAATTTTTAAAACTTAGATTTTCTTATTTAGAGGATTTAAATTTAATTTCTAAGGGTTTGTTGATTTAATTATTTGGAATATTTATGTTTATTGAATCATTTAGATTTTTAAAAATTAAGATTAGATAATAAGTTAAATAAAATTTCTCTAATTAATAAGTTAAATCTTTAAATTTAAAAAGATAAGAATACTTAATTTAACTAAAAGAGAAAGATTTAAATATCAGTGGGTTTATAAATAAAGGTAGTTATTTACCCTTAGAAAAATATGGTGCCGAAAAGTATATATATTAGAAAAATAATAAAAAATTGATTGTGAATGATTGCCCT # Right flank : CAATAATTCTCCCGTTTTTCGTTTATTGTAGCACTCGTTAAAATCAGACCTCTTAGAGGTTTATTCTCTTTTTAAACCATTAAAATCAAAGTAAAAGAGATATTTTTATCTTCTACTTAGTAATACTCACACATCTAAATATACAACAAACTATTTAAGTTAGTAATACTGAAAAAGAAAAAATCCCGAGAAATTTTTCAACCAGTATTAAAAATTATTACAAATTTAGAAAAATAAAATATAAGCTAACTAAATCATCCCAAAGACCTCAAAATACTTTTTCTGCCTAACGACCATTACTGGGATGTTGTTTTCTATTAATTTCTCTTTAAGTTCTTTATCGTTTGTTGCTACAATGACATTTTTATTTTCTTTTGCATAATTTAAGATTGCCTCATCTGCATAATTAGCATTGTAATCAATTAATTTGTAGTTTTTTATCTTTGCAAGTGCTAAATTAACAGCCAATTTTTCTTTACCTTTTAAATCTCCACTTTTTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGAATCGGTATGGAAAC # Alternate repeat : GTTAAAATAAGACCGATTCGGTATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 5 448510-449083 **** Predicted by CRISPRDetect 2.4 *** >NC_013887.1 Methanocaldococcus sp. FS406-22, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 448510 30 100.0 37 .............................. CGAGATTTTAAGCCATATACAAGAATGTTTAAATTAA 448577 30 100.0 32 .............................. CAAAAGAATTATTCAAACTGATAGATTGCCAA 448639 30 100.0 41 .............................. TGTCAAATAATTTAGCGTATGGATTTACTCCACAGCCAGAT 448710 30 100.0 38 .............................. GATGGAAAGAAGATAGGAGGATATCCTATACACAAAAA 448778 30 100.0 38 .............................. TTCTTTGTATGGGAGTGTGGTTGCTTCTAATAGTAGTT 448846 30 100.0 40 .............................. GCCAATACCCACAATATTCCAAAAAATCCAATTATTGCTC 448916 30 100.0 37 .............................. AAAGCTTCAGTAATGCTTTTATCAGTGATAGCGTCTT 448983 30 100.0 40 .............................. GATATTTATATTATTTTTGTTTAGATAGGCTGCTAAGTTG 449053 30 76.7 0 ........A.....TC..A.AG.......G | A [449073] ========== ====== ====== ====== ============================== ========================================= ================== 9 30 97.4 38 GTTAAAATCAGACCGATTCGGTATGGAAAC # Left flank : TATTTTAAGTGATTTAATACACATCTACCTCTCTACTAAAAAATAATTAAATTTTTTGATATTGTGTAATATTTATATATGAGTTTGTTGATATTTTTTGATTAAGGTGTTTTTAGGTGTTTATTATATTGTTATGTTTGTCTCGTTGAATAAACTCGGAATTTGATAAGGTTGTTAATTAGTTGGTATTTGCTTATTTAGAGGATTTAAATTTAATTTCTAAGGGTTTGTAACTTTGATTATTTGGAATATTCAGGTTTATTGAATTATTTAGATTTTTAAAATTTAAGATTAGATAGTAAGTCAAATAAAATTTCTCCAACCAATAAGTCAAATCTTCAAATTTAAAAAGATAAGAATACTCAATTTTATTAAAAGGGAAAGATTTAAATATCATTGGATTTATATTATGGAGTAGTTATTTACCCTTAGAAAAATATACTACCAAAAAGTATAAATATTAGAAGAATAATAAAAAATAGGTTGTTGATGATTGCCCT # Right flank : GTAAAATCAGACCTTTAAAAAATTTTATTACTCTATAATATTTATTAATTTAAATATATAAATTAACCTCCAAAAACTCCATGACAAACGGTATTACATTAATACTTAAAAAATTCCGTTTCTTAATAATAAATAGTAGTAATTTATATATCTCTAAATTTATGTACTATTTTTAACCATTATTTTTAGGTGAAATCAATGTATGCAGTTAGAGACATAAACCTTTGGAAAGAAGGAGAAAGAAAGATTGAATGGGCTAAACAACACATGCCAGTTTTAAATTTAATTAGGGAGAGATTTAAAGAAGAAAAGCCATTTAAAGGAATAACAATAGGAATGGCTTTACACTTAGAGGCAAAGACAGCTGTTTTGGCAGAAACATTGATGGAAGGAGGAGCAAAAATAGCTATAACTGGCTGTAATCCTTTATCTACACAGGATGATGTTGCTGCTGCTTGTGCAAAGAAGGGAATGCACGTCTATGCATGGAGGGGAGAGAC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGATTCGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 6 453694-453875 **** Predicted by CRISPRDetect 2.4 *** >NC_013887.1 Methanocaldococcus sp. FS406-22, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 453694 37 94.6 37 ......A....C......................... TATTCTGCTTTTTTGATTTCTGGTTTTAGTTGTTTGT 453768 37 100.0 34 ..................................... TTTTTCAGTTGAGGGTTGTATACTCTTACCTCAT 453839 37 83.8 0 ......C..CT....................TT...T | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 92.8 36 GTTTGAGTCGGTAGTCCATTAAAACAAGGATGGAAAC # Left flank : CATATCTATTAATTCCATATCTGGATGTTTTTTCATAGCCTCTTGCTTTGCTCTCTTAATCTTCTCAAATTTGTAAATTACATCTTCCTTACCAAACTTCTTTCCCCCAATCCTTTCAGCAAATAAGTTTTGTATGTAGCTGTCCATTTTATCACCAATGGCATTTTTGTTTTAATGGTAGATGGGATTTAATAGATATAAAAATTTCGCTCATATTCTATATTAGAGTTTTTAATTTTATGTTCTTGGTTTTATATACTCTCTGTTGGAATTTTGTATTAGAAAATTTATAGAGAGTAATACTGATTTTTGATTTTAAGGTATTGATATTGGTTAATTATTGGGATTTTTGTTTATGGTTGTGTATTGAATTTATAAATTAGATACAGCCTTCTTAATCTTATAAAGGATTTAATAATCATGCAGTAAGAACATTGAGATAAAAATTAGAAAGGAATATATAGGAGTTTAGGCATATATTATAAGAGCAAAATGTTAGA # Right flank : TAAAATAAAAATCACTTAGCAAGTGTAAACCTCACATCATCATCCCCAACATCAAACAATCCCAACCTAACACCCGCATCAATCCATCCATAGGCATAATTTAATGAGGCAAAGGCAGTTACATAATCCCCTCTCTCTTTAAATGCCTTAGCATCTTCAAAATAGCTCTCTATCATCAATAAAAAATCCTTAGCAACATCATACAATAAACTTCTCTTTGGTGGCATGCCTTTTTTAATAATCTTTATTGCCTCCTCTGTTCTTTTAAAATAATTATTTAGCTTCTCTTCAGTTATTTCTTTATTCAACTCTATCACCACCAAAAAATTTTCTTAAACAAATCAAATTTGTAAATTTCCAGCCCCTCAATTTATAAAACTCCAATGCCTTTATGTTGTCTTTATCTGCCAATAGAGATAACCTCAAAAAACCATTTTCTTTGCAGTATCTCTCAGCCTCCAATAAAAGCTTTGTTCCAATGCCTCTGCCTCTAAACTTTT # Questionable array : NO Score: 3.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGTCGGTAGTCCATTAAAACAAGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 7 476336-475192 **** Predicted by CRISPRDetect 2.4 *** >NC_013887.1 Methanocaldococcus sp. FS406-22, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 476335 30 100.0 42 .............................. GAAGTCCCCCATTCCCATTGATAAAAAATCAATTGGGGTTTT 476263 30 100.0 39 .............................. AAGAATCCCCCAATAATAGCCCCAACGCTTCTAATCCTA 476194 30 100.0 40 .............................. AGTGTTGCAAAGTTGGAAAAATCGAACATACGCTCATAAG 476124 30 100.0 42 .............................. CGAATCTACTGTTGTTTTCCAGATGTATGTTGTTGCCCCCTC 476052 30 100.0 42 .............................. GATTGGATATTTAGAGCTTTCTGTAACTCTCCGAATGACTTA 475980 30 100.0 42 .............................. TTTTATTATTTGGTGAAGGATAAGGAGCAGGTTGTTAGTTTT 475908 30 100.0 42 .............................. ATACAGGGGAGAACAATATAGATTTGCAGTTGAAAAACCTCC 475836 30 100.0 35 .............................. AAAAATCTATCATATCGCACGTCAATATCTAGCAT 475771 30 100.0 37 .............................. AAGCTTTTAAACATTTTTGTATTTCCTTTACTGTCTA 475704 30 100.0 38 .............................. TAAAGCTTCTCTTTCTTCCAATTCTTTAATTTTCTGCT 475636 30 100.0 38 .............................. GATGAGATGACGACTTCTGATTTTGTCAAGTTCTTTAA 475568 30 100.0 43 .............................. CTCCTCCTCAACAACCTTTTCATAAATTATGTCATTCTCTTCC 475495 30 100.0 35 .............................. CGTTGAGGCTCTTGCAGAAACACTTAATAGCATGA 475430 30 100.0 37 .............................. TTTAGTTTTTCAGAATCTACAGTCTCCCTAACATGCT 475363 30 96.7 41 ........A..................... ATTAAATCCGTAGGTTCGATTGTATTTAACCTAATATCATA 475292 30 86.7 39 ..............TC..A..G........ CCCGGAAAGGCTTGTGCTGCTATGATACTTCCTATAAGT A [475272] 475222 30 83.3 0 ..............TC..G..G..A..... | A [475202] ========== ====== ====== ====== ============================== =========================================== ================== 17 30 98.0 40 GTTAAAATCAGACCGATTCGGTATGGAAAC # Left flank : TTCTGTAGAAAAAGCGAGAGAATTGGCCGAAAAATGTGCCCATGCAGTTAAAATTGAATAACAGCAACGTATTTATATTAGATTTTCTTTATATTTTTATTGTTGATGTTTTTATTTGTTTTATTGTGGTGTTGGGTTTGTCTTGTTGAATAGGCTTGGAATTTGATGAGGTTGTTAATTAGATAGTATTTATCAATTTAGAGGATTTAAATTTAATTTCTAAGGGTTTATTGATTTAATTATTTGGAATATTTATGTTTATTAAATTATTTAGATTTTTAAAAGTTAAGATTGAATAGTAAGTTAAATGAGATTTCTCTAACTAATAAGTTAAATTTTCAAATTTAGAAAGATAAGAATAATTAATTTCGTTAAAAGGGAAAGATTTAAATATCAGAAGGTTTATAAATAAACACAGTTATTTATACTTAGAAAAATATGACTCCGAAAAGCTTAAATATAAGAAGAATAATAAAAAATAATTTGTGAATGATTGCCCT # Right flank : TACACTTGTTTGCCTTGCCATATACTACTGCATAAAAGTTAAAATCAGACATCTTAGATGTTTCATTCTCTTTTAAGGATTAAACCAAAAGTAAAAACCTATTTTTATTCTTAAACTTAGTAATACTTATATATCTGAATATATAACAAACTATTTAAGTTAGTAATACTGAAAAAGAAAAAATCCCGAGAAAATTTTCCAACCAGTATTAAAAATTATTACAAATTTAGACTAAAAATCTGCCTCCTATGAAATTAAAAATTAAGATATTAAGATATTTTTTCATCTGGAAAAGTTATAGCTTTATTTTCACAGCACATTATAGAGCAGGCATTACAATTAACTATACAACTATATGGATATTTAACAACAACCCTGCCATTTTCTACATCATAAACTCCTCTTGGACAAAAAGAGATACATTTTTTACAATTTTTACATTTACTATAATCAATTTTTGGAAACCAAGGAATATCTTTTCTCTTCTTTCCATATTCTTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGATTCGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 8 554503-554947 **** Predicted by CRISPRDetect 2.4 *** >NC_013887.1 Methanocaldococcus sp. FS406-22, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 554503 31 100.0 40 ............................... TAGTCATAAAGATTAGGAATTTTAAGTTGTGATGTAACAG 554574 31 100.0 38 ............................... ACGATTATTCAGATGAATTATTAAGCTTTTTAATCGAA 554643 31 100.0 37 ............................... TAGAAACAAAACACTACGCAGTTGTTAGGCAGAAAAA 554711 31 100.0 37 ............................... ATTTGAGAGTTATAACAGATATATGTATGTTCATCGA 554779 31 100.0 37 ............................... TTAAGTATTTTAGAGAATTTATAAGCCCATATAACGT 554847 31 100.0 39 ............................... CACTTTCATAGCAGGGTCTACAACTTCAACGAATGTAAA 554917 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================== ================== 7 31 100.0 38 GTTTCCATCCTCCAAGAGGTCTGATTTTAAC # Left flank : AGGTCCTGTAGACCCACAGCTTGGGCAATATCCTGCTCCAAGTATAGTTAAAGCTGTAGAGCAGAAGGGAGTTGATAAGGTAGATGACCAAACCTTAATATTGGCAGATATTGCCAAAAAAGCAATAAATCAGGTTCAAAATTTTGTATATAGTTTATTAAAGGATAAATATGGAGAAGAGAAAGCTAAAGAACTATCTAAAACATTAACAGAAGGTAGGTGGACTCATGACTATCCAATAACTGTTGAAGAAGCTAAAAAACTTGGTTTGGACGTAGATACAAATGTTCCTGAAGAGGTCTATATGCTGATGGAATTATATAAGCAACCAGTAAGACAGAGAGGAACTGTTGAGTTCATGCCATATCCAGTAAAACAGGAAAACAGCAATAAATAAAAGTTATTTTACACCTTTTATAACTTTTTTATTTTTTTATATAGTAATAATCTTATTTTAACAGTGAGAAAGATATTTTATATCGAATTCGTAGAGGTGTGTC # Right flank : CAGGGCAATCATCGACAATATAATTTTAATCACTCTTCTAATATTTAAGCTTTTCGGAGGTATATTTTTCTAAGGGTAAATAACTATCTTTATTTATAAACCCAACACTATATAAGTTTTTCCATCATCAATAAAATAGAGCATTTTTATCTTCCTAAATTCAAAAATTTAACTTATTAGTTAGAGAAATTTTATTTACCTAATTATTTAACCTTAAATTTTAAAAATCTAAATAATTCAATAAACCTGAATATTCCAAATAATCAAACTTACAAACCCTTAGAAATTAAATTTAAATCCTCTAAATTAACAAATACTATCTAATTAACAACCTTATCAAATTCCAAGTCCATTCAGCGAGACAAACACAACAATATAATAAACACCTAAAAACACCTTAATCAAAATTATCAACAAGCCCATATAAATATTTTTTAACGCGTAAATTATTTAAGCTTTTTGTATTTACAATATTTTTAAACAAAGTTTCAACCAAGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTCCAAGAGGTCTGATTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.40,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 9 579483-578759 **** Predicted by CRISPRDetect 2.4 *** >NC_013887.1 Methanocaldococcus sp. FS406-22, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 579482 30 100.0 36 .............................. AAAACTCGAAAAAGGTTATTAAAAAATCTAATAACT 579416 30 100.0 35 .............................. GCCTTCTCTGCAATATCGTTGTATGCATACTCAGC 579351 30 100.0 45 .............................. TTGATTTGATCCGTCCTCCAATGTCTGTATGAACTTCTCAATAAC 579276 30 100.0 42 .............................. AACAGTCAAAACATTAACAGATATCAATCTTTCGATAACCGA 579204 30 100.0 46 .............................. GATAAAAATACAGATGTCAGATATTGGTAAATCTGTTAGAATTATA 579128 30 96.7 37 ..................T........... ACGAACATTGCGTCTTTATGTTTATTAACTAATTTTT 579061 30 96.7 33 ........C..................... TTTTTAGCATTATATCCAAACGAAGACATAAAG 578998 30 93.3 41 ........C..........A.......... GTATCATGTGGGTATTTGTGTGCGTGTAATCCTAAAAGAGG 578927 30 96.7 41 ........C..................... AAAGCTTCCAAAGCTGTTTGAACTACGTAACTCGCTATACA 578856 30 100.0 38 .............................. TTGTCTAATAACAATTCAAATCCCTTTTCAGATGTTGC 578788 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 11 30 98.5 40 GTTAAAATAAGACCGATTCGGTATGGAAAC # Left flank : TCCTTGAATTGCTAAGACACCAATAATCATATTTACCCTCATACTTAAGGTTTTTATATTTGGAGTGCCCTATATTTCATAATAATATCTCCTTATTAATCTTTGTTTTTTGCTGTATTTAAATATGTAAATTATATTTGTCTTGTTGAATGAACTTGGAATTTGATAAGGTTAATGATTAATTAGTATTTAAGGATTTAGGGGATTTAAATTTAATTTCTAAGGGTCTGTTGGTTTAATCGTTTGGAATATTTAGGTTTATTGAATTATTTAGATTTTTAAAATTTGAGATTAGATAATAAGTTAAATAAAATTTCTCTAACCAATAAGTCAAATCTTCAAATTTAGAAAGATAAGAATACTCAATTTAATTAAAAAAGAAAGATTTAAATATCAGTAGGTTTATAAATGAGGATAGTTATCTACCCTTAGAAAAATATAGTGCCGAAAAGTATAAATATTAGAAGAATAATAAAAAATAAGTTGTGAATGATTGCCCT # Right flank : ATACTGAGGGTCTGCTACTAAAGCTCCTGCCATACTTATTAATAAAATCAGCCTCTTTGGGGATATCAAATTAAACACCAATTTTATTTTTTTATCCAGTAATACTTATACATCTAAATATAAAATAAACTATTTAAATTAGTATTACTAAAAGAAAGAAAATCCCGAGAAAATTTTTAGACTAGTATTAAAAAGTAATAAAAAATTTCCAATTCTAAAAAAGATTTATATATAGTGTAGAAGTAATCTTTATTCACTTGTTAAAACAGATTTCTTAGAGTTATAAGAGGATTCTTCCCTCATAAATCTTGCGTTACTTCTTCTTATAAACTCTTCACAAACCTCCTCTGGATTTCCTTCCATAACTAACCTGTTCTCATCCAATAGGATGGCTCTATCACTAATCTCTTTAATGAACTCTACACAGTGAGAGACTAAAACTATTGTAGTGCCAAACCTCTCATTGATTATTTTTAGATAGTTAGCTACATCCCTCAAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAAGACCGATTCGGTATGGAAAC # Alternate repeat : GTTAAAATCAGACCGATTCGGTATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 10 758705-759980 **** Predicted by CRISPRDetect 2.4 *** >NC_013887.1 Methanocaldococcus sp. FS406-22, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 758705 30 100.0 38 .............................. AAAGCTTATACAAATCGTTAAACTTCCTGATTTTCAAA 758773 30 100.0 43 .............................. ATATAAGTATTTTTGAAGATTTTCGACTAAAACATCATATTTC 758846 30 100.0 34 .............................. TTAGGACTCTCAGTAAAATCATCTAACAGTGTTC 758910 30 100.0 42 .............................. TAAGTCATCATATAAGTTATTTATGTTATTAATCTCGTTGTT 758982 30 100.0 40 .............................. CTTCCCAACTTTGAGTATAATGCACCAACGAACAATTACA 759052 30 100.0 38 .............................. AATAGGGCAATACCAAATCTAACAATAGCACCAGACCA 759120 30 100.0 37 .............................. TTGATTTCATGGGGAGGGATGTATGGTATATAGAGAA 759187 30 100.0 39 .............................. GAGTATTCTTATTTAAAATGGGAGAGAATATGGAGGTTT 759256 30 100.0 39 .............................. TTGAAAAACAACAAATAATAGAAGTAGAAGACAACAATG 759325 30 100.0 38 .............................. TAAATCAGATTAAGAATAGGATTTATACGGATTACTTA 759393 30 100.0 38 .............................. AAAATTAGTTTTTTGAATTTTTCAAAGTCTTCGGAAAA 759461 30 96.7 42 ............T................. TTATCAACTTGGTATGGTTCAACTTCGGCAAGGTCTTGTTCG 759533 30 100.0 42 .............................. TCATGTAATTATGCAATTCATAGTTTCTAATGTAAATAAGCC 759605 30 100.0 38 .............................. TCAACTATTGGAGACAGCAATTCTCCCATTGAAGCTAT 759673 30 100.0 43 .............................. ATCGGCAGGAGCACCTGCGTTAGCATATCCCTGAATTGCTTTG 759746 30 100.0 43 .............................. TTGGATTCATTCACATCCCCCCCACCATTATTATCATTATTAA 759819 30 100.0 38 .............................. CCGTATTCAAATCTTCCAGAATATTCTAAGTCAGTGTA 759887 30 100.0 34 .............................. ACTTTCAAGCTCCCATTTCCTTATTTTTTATATT 759951 30 80.0 0 ........A...TA.T.G......A..... | ========== ====== ====== ====== ============================== =========================================== ================== 19 30 98.8 39 GTTAAAATCAGACCGATTCGGTATGGAAAC # Left flank : TGAATTAGTTAAAACAGATAAAAAAATAACCTTAGGAGAGTTGTTTGAGATGTATTAATTAGAAAAGTAAAATATTTATATGAGTTTGTTGATAATTTTGATTAAGATGTTTTTAGGTGTTTATTATATTGTTGTGTTTGTCTCGTTGAATAGGCTTGGAATTTGATAAGGTTGTTAATTAGATAGTATTTGTTAATTTAGAGGATTTAAATTTAATTTCTAAGGGTTTGTAAGTTTGATTATTTGGAATATTTGGGTTTATTAAATTATTTAGATTTTTAAAAATTAAGATTGGATATTTAGCTAAATAAAATTTCTCTAACTAATAAGTTAAATCTTCAAATTTAGAAAGATAAGAATACTTAATTTTGTTAAAAAGGAAAGATTTAAATATTAGTGGGTTTATAAATAAAGACGGTTATTTACCCTTAGAAAAATATACTACCAAAAAGTATAAATATAAGAAGAATAATAAAAAATTGATTGTGAATGATTGCCCT # Right flank : CGAAATTATTAAACTTACCATTAATTGTCGCTAAGAAAGCACCGCCCTTTAGGGCGGTGATGAATTAGGGGAGGTGGGTGGGACAAGCGTAATTTTTATATATTCGAAGTTAGAATCTAACGATTGTCCCCAGTCCACGTTATTATGGGTGGGATTCAGGCGAAATCAAAGATTTCGCTACCTGAAGCAGAAACTTCAGTCTCGAAAATCCCACCGCTGGGGACGTTAAGTTGGGAAAAGGTAGTCCCGAACCCCGAAAGGGGTAGGGATAGTGGGCTTGGCAACCCATGGAGGGTGAGGGTTTTAAACCCTCTGCTCTCCTAAAGAAACTCCGCCCTTTAGGGCGGAGAGTATGTCATTAAAAAACTCCCTACCTAATTAAAATCCCAATACAATATAGAAAATAAGATAAAAAATCAGAAATTTTAAACTCTCATTTTTAAAAAGATTTGAGTTTAATTATTAATTCTCCAAATAACTTTTCTTGAATTAATTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGATTCGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 11 926377-926926 **** Predicted by CRISPRDetect 2.4 *** >NC_013887.1 Methanocaldococcus sp. FS406-22, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================================================================================================================================================================================================== ================== 926377 31 100.0 36 ............................... AAATTTGATGCAATAAAAGGAAAAGAAGAACATATT 926444 31 100.0 35 ............................... CACTTTTAAGAAAATAAGCATCTTTAGCTCTGCAA 926510 31 100.0 40 ............................... GCTGGTCAAGGACGATTCTTTTCTCTCTGTCGTCCATACC 926581 31 96.8 42 ........C...................... TTTTGTATTATAGTTTTTATACTAACATGTTGGACAATTCTA 926654 31 77.4 210 ........C.........A....T.TT.TT. TCTTTTAAGGATTAAACCAAAAGTAAAAGAGCTATTTTTATTCTTAAACTCAGTAATACTTACGTATTCAAATATATAACAAACTATTTAAGTTAGTAATACTGAAAGAGAAAAAATCTCGAGAAAATTTTTCAATCAGTATTAAAAAGTAATAAAAAATTCTAATTCTAAAAAAGATTTAGTATAAAAATAAACTGCAATCAATCTTTT 926895 31 77.4 0 A.......C............AA..TA..G. | T [926901] ========== ====== ====== ====== =============================== ================================================================================================================================================================================================================== ================== 6 31 91.9 73 GTTAAAATAAGACCTCTTGGAGGATGGAAAC # Left flank : ATCTCAAACCCAAAAATAACCATAATCACTGAAGAAGGCACAGACCCCATAGAAGTTTTAAAAGAGGGATTAAGAGATATTATTAAAATGTGTGACACCTTATTAGACGAATTGAAAGAGAAAAAATAATCAGATATTATCTCGCTGAATAAGTTTATAATTATGAGTAATTCCATTAAATCTTTTATTATCTTATTTAGAGGATTTAAATTTAATTTCTAAGGGTCTGTAAGTTTGATTATTTTAAATATTTATGTCTGTTAAATTATTTAGATTTTTAAAATTTGAGATTAGATATTTAGCTAAATAAAATTTCTCCAACTAATAAGTTAAATTTTCAAATTTAGAAAGATAAAAATGCTCTATTTTATTGATGATAGAAAAGCTTATATAGTGTTGGATTTATAAATAAAGGATGTTATTTACCCTTAGAAAAATACACCACCAAAAATTATAAATATTAGAAAAGTGATAAAAAATAGATTGTGAATGATTGCCCT # Right flank : CATAATTTTTTATTATTCATTTATAATATTTAAATATAAAAATTAAACTCTATAAGAAATATCTAAATAGAAATTTGCAGAGATGAACTCTTTAAAGGGAAATTAACATCTTTAAGCTCTTAAATATCTTAGTTAAATATACAAGATACGAAAGTTCTATATAGCCAAAACAACAAAATTAAAATTGAATAAAAAATGGTGATATCATGGAAATTATTTTTAGAGGAGCGGCGTTAGAAGTTGGAAGGAGCTGTATAGAAATAAAAACTGATAAAAGCAAAATACTATTAGACTGTGGGGTTAAATTAGGAAAAGAAATAGAATATCCCATATTGGACAATTCTATAAGGGATGTTGATAAAGTTTTTATTTCCCATGCTCATTTAGACCACTCAGGAGCTTTACCCATATTGTTTCATAGAAGGATAGATGTTCCAGTAATTACAACAGAGCTATCAAAAAAATTAATTAAAATCTTATTAAAAGATATGGTGAGAATT # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAAGACCTCTTGGAGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-91.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 12 979354-978906 **** Predicted by CRISPRDetect 2.4 *** >NC_013887.1 Methanocaldococcus sp. FS406-22, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 979353 32 100.0 35 ................................ TATTACATCTAACTTCATTCTTTCACCCCGAGCAA 979286 32 100.0 35 ................................ AGTGTCTCAAACTCCTCTTTATTATTTCTTGAATA 979219 32 100.0 37 ................................ TATAAGCTAAAAGATTAGTAAATAATTTTCTAAAATG 979150 32 96.9 40 ........C....................... CAAATATATCTTGTGGCATTCCAGAAGGAACATCATCTAT 979078 32 93.8 37 ........C.....................T. GTTTTCGTGCCGTAATCCTTACATCTCCTTTAAAAAT AGG [979052] 979006 32 93.8 37 ........C......................A TGCTAACTTTAAGGTTATATTCTTCAAGTAATTTTGA 978937 32 81.2 0 ........C................ATTCT.. | ========== ====== ====== ====== ================================ ======================================== ================== 7 32 95.1 37 GTTAAAATAAGACCTCTTGGAGGATGGAAACT # Left flank : TTAGCAGCTTCTACAAGGGGAGATATTGAAGATAAAACTGGTTGGACCTGTGTTGTTGGAACAAGAGATTCGTCCCAAGTTGGTGACTTCTTAAGGAAAAACTGGAATAAGATATTAAAAGAATGGAAGGAGAAGAACCAAACCACATAAATCACATTATTTAATTTTAATTATTTTAAAATCTAAATTTTCTTATTTAGAGGGTTTTTATTTAATTTCTAAGGGTATAGTGATTTGATTATTTTAAATATTTATGTTAATTAAATTATTCAGATTTTTAAAATTTAAGATTGGATAATTGGCTAAATAAGAATTCTCTAACTAATAAGTCGAATCTTCAAATTTAGAAAGATAAAAATGCTCTATTTTATTGATGATGGAAAAGCTTATATAGCGTTGGGTTTATAAATAAAGGTAGTTATTTGCCCTTAGAAAAATATGGTTCCGAAAAGCTTAAATATTAGAAGAACAATAAAAAATTAATTGTGAATGATTGCCCT # Right flank : TTTTAAACCATTAAAATCAAAAAATTAAAAAGCTATTTTTATCTTCTACTTAGTAATACTCACACATTTAAATATATAATAAACTATTTAAATTAGTAATACTAAAAGAGAAAAAATCCCGAGAAAATTTTTCAACTAGTATTAAAAAGTAATAAAAAATTCTAATTCTAAAAAGTTTTAATGGGTTTTCTTTCGCTTATTAATAGTTTTTTCTAAATTTAAATACAATGTGGCAAATAAAACAAGTACTGGGATGATTTCTAATCTACCAATCCACATAGCTATAATTCCAGCTATTTTTCCAATTATTGGAGTTTTTAAGGTAACCACTCCCAAAGATATGCCTATATTTGAAGTAAAAGAAATGGCATCGAATATTGAATCATAAGGGCTATATCCCAAAGCTATAAATATTAAAGCTGTTAAGAACGAAGATAAACAGTATAAAAAGAATACGACAAATGCTTCTCTAACTATATTATAATCTAAATCAATACCAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAAGACCTCTTGGAGGATGGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 13 1004051-1004622 **** Predicted by CRISPRDetect 2.4 *** >NC_013887.1 Methanocaldococcus sp. FS406-22, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 1004051 30 100.0 38 .............................. GTTCAGACAATTGCGGGTTGGAAATGAGTGCGGGTGTG 1004119 30 100.0 42 .............................. TTGCAAGAAGCAATTCCAGACAACTCTTCATTTGCATCTTTG 1004191 30 100.0 34 .............................. TGGCTATCTCTTTTAGTTCGTCTTCAGTATATGT 1004255 30 100.0 34 .............................. TGGCTATCTCTTTTAGTTCGTCTTCAGTATATGT 1004319 30 100.0 41 .............................. TGCATAGACCCATACCCAACAGTCTTTATTCGCCTTAAATG 1004390 30 96.7 39 .........................A.... TTTATTGTATAGTTTTTTTTAATTTACCTCTCGTCGTAG 1004459 30 100.0 38 .............................. GCAAAGTGTTTCAAAATCTTTAATACCATTTTTAATTA 1004527 30 100.0 37 .............................. TTGTATTTGAATGATTTTCTAAATCCAATGCTTGTGA 1004594 29 86.7 0 ........C........G......A.-... | ========== ====== ====== ====== ============================== ========================================== ================== 9 30 98.2 38 GTTAAAATAAGACCGATTCGGTATGGAAAC # Left flank : GAACGAACAGCTTTATGAATGGTAGTCCTTACTCCTTCCTATACAACGGTGAGCCGTTGAGTATGGGACAGAGAATAGCAAGAGAGATAAAAATGGCTTTACAGTTAGATATGGTTGATAGGATTATTTCTTAAATATTATCTTACTGAATAGAGGTATAATTAAAAATAGCTAATTAAAAACCTTTATCTTTTTGCTTAAAAGATTTTTATTTAATTTCTAAGGGTCTGTTGGTTTAATCATTTGGAATATTTATGTTTATTGAATTATTTGGATTTTTAAAATTTAAGATTGGATAATAAGTTAAATAAAAATTCCCCAACCAATAAGTTAAATCTTCAAATTTAGAAAAATAAAAATACTTAATTTAACTAAAAGAGAAAGATTTAAATATTAGTGGGTTTATAAATAAAAATAGCCATCTACCCTTAGAAAAATATAGTGCCGAAAAGTATAAATATTAGAAAAATAATAAAAAATAGATTGTGAATGATTGCCCT # Right flank : CTCCTGATATATTCAAAAAATGAATGGATTTATTATTTCTAAAACACATTTTATTGATTTAACTATGAAAAATAGTTTAAAAACTTTTTTCAGAATTTATTAAAAAATTATTTTAAAAGAAGATGTTGAATTAGAACTTTTTAAACATTTCTTCCACAATTCTTGCAAACGCAGGTCTTGTTATAAATATACCTATTAAAACCCCTGCTATTGTAGTTATTGCAAATCCTTTTAGCATCCCTACCCCAAGAAAGAATAATGGTATCATAGCAGCTATGGCTGTTGATGCAGAGGCAAATATTATAAAGAAAGCCCTTTTAATGCTTGCTTTTATTTTACCAGCTCCTCTTTTTAATGCCTCATCTGTCATAACAATCTGGTTATCAACTCCAGTCCCCACAGCGGCAATAATCCCAGCTATTGAAGGTAAATCCAATTTCCAATCTATTAAAGATGCAAAGCCCAATATTATGATAACTTCAGATATACAGGTGATTAAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAAGACCGATTCGGTATGGAAAC # Alternate repeat : GTTAAAATAAGACCGATTCGGTATGGAAACG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 14 1021672-1022737 **** Predicted by CRISPRDetect 2.4 *** >NC_013887.1 Methanocaldococcus sp. FS406-22, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 1021672 30 96.7 37 ........C..................... TCTTATGCAAATGAGGACAAAACAAATCCTTACCAAC 1021739 30 100.0 36 .............................. TAGTGATAAGGTAGGAAAATTGAGATTAAAAAAAAA 1021805 30 100.0 45 .............................. TAATCGGAAACACCAAAACCTCCGGAGGGGTAACTCTACATGATG 1021880 30 100.0 36 .............................. TAGTGATAAGGTAGGAAAATTGAGATTAAAAAAAAA 1021946 30 100.0 45 .............................. TAATCGGAAACACCAAAACCTCCGGAGGGGTAACTCTACATGATG 1022021 30 100.0 36 .............................. TAGTGATAAGGTAGGAAAATTGAGATTAAAAAAAAA 1022087 30 100.0 45 .............................. TAATCGGAAACACCAAAACCTCCGGAGGGGTAACTCTACATGATG 1022162 30 100.0 44 .............................. TTCTTTCTAATTCAATTAGCTCTGTCAAATCTTTTTTTAAAATA 1022236 30 100.0 40 .............................. TGGTTTTAGGAACCGACAAAGAACTAAAAGAATTAGAAGA 1022306 30 100.0 35 .............................. ACTTTATCTAACGTGCTTAATGGCCCTTCTTCAGC 1022371 30 100.0 37 .............................. GACATCTTAGAATTAGATGCAATGTTGAGTTATAATG 1022438 30 100.0 37 .............................. AACATTCTACCAGTTGTTGTGTATTTTTTAACTCTCA 1022505 30 100.0 37 .............................. TCTATTTCTTCTATTATCTTTATTATTTCCTTCTCCA 1022572 30 96.7 40 ........C..................... AAGCCCACAGCAACAAATAGATTGACAAACTTATCATGGT 1022642 30 96.7 35 ........C..................... TTCTCTATTTTCTCCAAATCCAAAATAAATAACTC 1022707 30 80.0 0 ........C..G..TC..G..G........ | A [1022727] ========== ====== ====== ====== ============================== ============================================= ================== 16 30 98.1 39 GTTAAAATAAGACCGATTCGGTATGGAAAC # Left flank : ATAACCCAATGTCCAATTAATGTGATTTATATGGATGAAGAGTATAATGTTGTATTCAAAGAGGAGGATTGTGTTGGTTGTAAAAACTGCCTAAAAGCTTGCCCATTCAAAGCAATTGAGATTTTTGAATAATTTATTTATCTTACTAGATAGGGGCATAATTAAAAATAGCTAATTAAAAATCTTTATCTCTTTGTTTAAAGGATTTAAATTTAATTTCTAAGGATTTATTGGTTTAATTATTTGGAATATTTAGGTTTATTGAATCATTTAGATTTTTAGAAGTTAAGATTGAATAATTAGCTAAATAAAATTTCTCTAACCAATAAGTCAAATCTTCAAATTTAGAAAGATAAGAATACTCAATTTTGTTAAAAAAGAAAGATTTAAATATCAGTGGGTTTATAAATAAAGGTAGTTATTTACCCTTAGAAAAATATAGTGCCGAAAAGTATAAATATAAGAAAAATAATAAAAAATAGATTGTGAATGATTGCCCT # Right flank : CTTTTTTAAATAAAAAATAAAGATAAAAACTTCAGTAATAAACTTTACAAACAATAGGACTTTTTAAAATAGATATGGCATCCTCTAAGGTTTCTTTTTTTGAAATGCAGAATAATGTGTTTCCCAACATAGATTGAGATGCTCCAACTGTAAATTTTAAGTCATTACAAACATCTAAAATTCTATCATCTATCAATTCAGTATTTACAGCAAACTCATAAGAAAGCCTAACAAAATTCTCCAACGTTGGATTTTTCAAAAGCTCATTTAAACATTTATTGCCAAATTCATTTATCTTTTTAATCCATTTTTCATTGGTAATTATCTCTTTTGTCTCTTTCTTTCCAAAAATCTCAATTATAACATAGTAATCATCACCAACAACTATTTTTTCAACGTCTATAGGAAAGCCAGGAGCTTTTCTTATAACAAAGCCCTTAACATATTGAGCTATGACATCCCCTAACCCAGTTCCACACTCTACTTCACTTATATGAGCT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAAGACCGATTCGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 15 1152006-1150801 **** Predicted by CRISPRDetect 2.4 *** >NC_013887.1 Methanocaldococcus sp. FS406-22, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================ ================== 1152005 30 100.0 39 .............................. GAAGTTACTGTTCCAGTATTAATGGCAATAATATTTGCG 1151936 30 100.0 36 .............................. AGACACGGTAGAGTTTGCAAAAAATAATAAGGAGGA 1151870 30 100.0 38 .............................. TTTATGTATTTATATTACATTTATAAGCATCTATCTAC 1151802 30 100.0 40 .............................. GTCAATACTTTTCCATCAACGCTTACTTTTACTGCATCAA 1151732 30 100.0 39 .............................. CTGGCTTTTAATGCAACAGCTTTTTTAAAGTGTGTTCCG 1151663 30 100.0 41 .............................. TTTTGCAATCAGATGTATGTTGGGTTTAAATTACGGTTACT 1151592 30 100.0 38 .............................. GCTATCTCTAAAGTCAGAATTAGAGACATTTCAATAGC 1151524 30 100.0 42 .............................. TATATCTATATGCCACTGAATCACAGGACCATAATGCATCCC 1151452 30 100.0 36 .............................. AATAGTGTCCTCTTAAGCCCGTCATTACACACTGGC 1151386 30 96.7 37 ........C..................... TTGTTTTGTAATATTCCTCTATGATACTTTTCCAACT 1151319 30 93.3 36 ........C....A................ CATCTTCTAATAAATAAATCTGCTGGAGAGAATCAT 1151253 30 96.7 34 ........C..................... TAGAATAATTTTTGAGATGCTGAGTAATAGTAAT 1151189 30 96.7 37 ........C..................... GTAATCTCTTCATATACTCACAGTTTTTGTAACTGTC 1151122 30 100.0 48 .............................. TTGATTGGATTGCTAAAAAAAGGTAGAAAAAGAAATATAAAGTGTATA 1151044 30 96.7 43 ........C..................... ATTTGTGTATTTTTGAATAATTCTGGCAAAAACAACAATAACG 1150971 30 100.0 40 .............................. GCTACTGTTGAGAAGTTGCAGTATTCATTAAAATACGCCG 1150901 30 100.0 41 .............................. ATCGAAATAGTGTCTGATTATATTGGGCATAGGGATGTTAG 1150830 30 96.7 0 ........C..................... | ========== ====== ====== ====== ============================== ================================================ ================== 18 30 98.7 39 GTTAAAATAAGACCGATTCGGTATGGAAAC # Left flank : ATTAAGTTTCAATTAATTGTTAATGATTTTTATAGTTTGATGATTTATTTAAAAAAGCATTTTCAGAAAACTACTTATATGAGTTTGTCGATATTTTTTGATTGAGATGTTTTTAGGTGTTTATTATATTGTTGTGTTTGTCTCGTTGAATAAACTTGGAATTTGATAAGGTTAATGATTAATTAGTATTTAAGGATTTAGAGGATTTAAATTTAATTTCTAAGGGTATAGTGATTTGATTATTCGGAATATTCAGGTTTATTGAATTATTTAGATTTTTAAAATTTAAGATTAGATAGTAAGTCAAATAAAATTTCTCCAACCAATAAGTCAAATCTTCAAATTTAAAAAGATAAGAATACTCAATTTTATTAAAAGGGAAAGATTTAAATATCATTGGATTTATAAATAAAGGATGTTATTTACCCTTAGAAAAATACACCACCAAAAATTATAAATATTAGAAAAGTGATAAAAAATAGGTTGTGAATGATTGCCCT # Right flank : AGCTATATCAGACTTAGGGCTACTACATTAGCTTAAAAACTTTTGATATATTGATTAATGCATCCGTTTTGGTGAGACAAAACTCTACTTTCTGGCTATGAAAACTCAAAGAACTTTTGTTTAACCGAAAGCTTTAGCTTTGAACAATGAAAACCGTTAGGTTTTTATCTAACCTTTGCTAAAAGTTTTAATTAGACTCCTTAGAGGATGAAAAGAATTATAAGTAAGAAAATTTTTTAGATGAGAATATGTATGTTATCATCGTTTATGATGTGAATGTTTCAAGAGTAAACAAAATAAAAAGCTTCCTTAGAAAGCATTTGAATTGGGTTCAAAATAGTGTTTTTGAAGGAGAGGTTACAAAGGCAGAGTTTGAAAGGATAAAAGATGGCATTTTAAGGATTATTGATGAAGATGAAGATTCAGTAATTATTTATCGATTTCCATTAGATTTTATGCCAAAAAGAGAGATTTTGGGTTTAGAAAAGAATCCAATTGAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAAGACCGATTCGGTATGGAAAC # Alternate repeat : GTTAAAATCAGACCGATTCGGTATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 16 1194903-1196175 **** Predicted by CRISPRDetect 2.4 *** >NC_013887.1 Methanocaldococcus sp. FS406-22, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 1194903 30 100.0 38 .............................. GACTTAAACTTATTGCAAGTAATATAATCTTTTAAAAT 1194971 30 100.0 33 .............................. CTGTTGGAGAAGGAACATCCTCAGGATTTAAAG 1195034 30 100.0 36 .............................. CTTTATTCTGGAGGGCTACTTGAAACAGTAGATAGT 1195100 30 100.0 37 .............................. ATATTAAACCGAAATAAGCACAGTCCATATGTATTTT 1195167 30 100.0 39 .............................. TTGACTTTGAATCTAACGATTGTTATCGGTACACGTATT 1195236 30 100.0 41 .............................. TCAGTAGATTTAAATGCGTTCTTCGACATTTCAGGAGCTAA 1195307 30 100.0 40 .............................. TTAATTTGGACTGTTATTGCAGTTGGCAAGGTTACATTAT 1195377 30 100.0 38 .............................. CTAAATAAACAGGTTCAGAAGATACGGGCGTATTGTTT 1195445 30 100.0 42 .............................. GTTGGAATCTAAAAAACTTATCAGAGTGTCCAAAACGTTTGG 1195517 30 100.0 46 .............................. CTGTGCTACATTTCTGTCAATCCAATATGCTGGTGGCAAACAGATG 1195593 30 100.0 38 .............................. AAATCAGCAAGGATTATTGCCCAATGGTTTGCCTGGAA 1195661 30 100.0 38 .............................. TCCAACACTGTATTCTCACTGTAAGATATGTCGACATC 1195729 30 100.0 41 .............................. ATTAATCAAGTTAATCTTGCTCTGATTCGTGAATTTATAGC 1195800 30 100.0 38 .............................. TTCGTTTCAGACCACATTATCCACGACCCTGACAGCTA 1195868 30 96.7 40 ........A..................... TTGGATGTTGCACAATTAAACTTTAACGCTTATTTGCAGT 1195938 30 96.7 39 ........A..................... ATTACAAAGATTGATAATATAATTCGCTCAAAAGTTCCA 1196007 30 96.7 38 ........A..................... GAGATGGAAATGTTAGAGAGGTTTTATGATAAGCCAGT 1196075 30 96.7 40 ........A..................... TTCTCTTCAACTATCCAACCGATTCTTCTCTGCCCATCCA 1196145 30 86.7 0 ..............TC..T..G........ | A [1196165] ========== ====== ====== ====== ============================== ============================================== ================== 19 30 98.6 39 GTTAAAATCAGACCGATTCGGTATGGAAAC # Left flank : TGTAAAAAAGTTATTAGTGGAAAGATTAAAGGTAGAAAATCAAGTTAAGGAGTATTTTGGTATGGAAAAATATTTATATGTGTTTCTTGATATTTTTATTTTAAGTTTTGATAATTTTTGGTTATATTGTTGGAAGTTTATCTCGTTGGATGTGTTTAAAATTTGATAGAGGTAACAATTAGTTGGCATTTGCTTATTTAGAAGATTTAAATTTAATTTCTAAGGGTATAGCAATTTAATTGTTTGGAATATTTAGGTTTATTGAATTATTTAGATTTTTAAAATTTAAGATTAGATACTAAGTTAAATGAAATTTCTCCAACCAATAAGTCAAATCTTCAAATTTAGAAAGATAAGAATACTTAATTTTGTTAAAAGGGAAAGATTTAAATATCAGTAGGTTTATAAATGAGGATAGTTATTTACCCTTAGAAAAATATGGTGCCGAAAAGTATAAATATAAGAAAGATAATAAAAAATAAGTTGTGAATGATTGCCTT # Right flank : CATTTCACAGTAATACCATCCAGACCACGTGCAGTCATCCCAGTATATGTATATGGTTAAAATCAGACCTCTTAGAGGTTTATTCTCTTTTTAAACCATTAAAATCAAAAGTAAAAAAGCTATTTTTATTCTTAAACTCAGTAATACTTATACATCTAAATATATAACAAACTATTTAAATTAGTAATACTAAAAGAGAGAAAATCCCCAGAAAATTTTTCAACTAGTATTAAAAATTATTACAATTTAGAAAAAATAAAAGATTTATGGATTCAACCCTATTTCAAATAACCCTTCTTTTTCATCAAATCCAAACATTATATTCATGTTCTGTATTGCCTGCCCACTTGCTCCCTTAACTAAATTATCTATTGCTGAGATAACCACCAATCTACCATGTTCATCAATCTCAAACCCACCAATATCACAGAAATTAGTTCCTCTAACCCAAGTTAATTTTGGCAAAACATCTGAAAACACTCTAACAAAAATCTCATTCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCGATTCGGTATGGAAAC # Alternate repeat : GTTAAAATAAGACCGATTCGGTATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 17 1207512-1209093 **** Predicted by CRISPRDetect 2.4 *** >NC_013887.1 Methanocaldococcus sp. FS406-22, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================ ================== 1207512 30 93.3 43 G.......A..................... AATCTACATTAACAGGTAATGACTGTCCTGTATCTGAACGCTC 1207585 30 93.3 33 G.......A..................... AATTGTTTAGCAACATTTAAAGCAGTTTCTAAT 1207648 30 93.3 37 G.......A..................... TTGGTCAATGGCATTGATTGAGAATTCAATATCAACT 1207715 30 96.7 33 G............................. ACTATTTTCATAGCTGTGAATAAAAAAGAGCGA 1207778 30 96.7 39 G............................. ATCTACAAACTCTAAGTCTAATCCAAAAACTACGCAATA 1207847 30 100.0 40 .............................. CAGGTTTTGGCAAAAATTACAAAGCATTCATCTTTAGACA 1207917 30 100.0 38 .............................. GATATTTTCTAAAATGTTTGAGTTTTACTCTATGATAC T [1207946] 1207986 30 100.0 39 .............................. CAGTACTTTGCAGAAGTGCAAAAACTGGCTGAAGCGATA 1208055 30 100.0 39 .............................. GCCTTTTGTCTTTGTGGCTCGGGGAGGGCATTTCGCCCT 1208124 30 100.0 40 .............................. GTGGTAGTTGCTATTTTAAATCTTAAGTATCTTAACGATA 1208194 30 100.0 36 .............................. AAGCTTCTTACTCAAAAATATGCTCTTCAAGTATTA 1208260 30 100.0 40 .............................. TGGCAATATTTACCAGTAGGGCAACTAAGAATGCGATTAG 1208330 30 100.0 40 .............................. ATGTTTGAACGCTCGTTGGATATAGGTATATATTTGCTCC 1208400 30 100.0 40 .............................. ATGTTTGAACGCTCGTTGGATATAGGTATATATTTGCTCC 1208470 30 100.0 40 .............................. ATGTTTGAACGCTCGTTGGATATAGGTATATATTTGCTCC 1208540 30 100.0 36 .............................. AAGCTTCTTACTCAAAAATATGCTCTTCAAGTATTA 1208606 30 100.0 49 .............................. ACTTCCAAACTTCTTTCCTACCTTCAACCTTGACAGTAATCTCAAAATC 1208685 30 100.0 37 .............................. TCAGCCACTGCCCCACCACCAAGATTAAACCACTTAA 1208752 30 93.3 37 G.......A..................... ATGACAACCTATAGGCCGACCGAAAGCTTTATATAGT 1208819 30 93.3 43 G.......A..................... GAACCTCCAGAAACTAACTCCCTGTGAACTAAATCACCAAGAT 1208892 30 83.3 45 G.............TC..G..G........ TGATTTTCTTCCTTCAGTGGGTGCCTACTTATCCACACTATTTTA A [1208912] 1208968 30 86.7 64 G.......................TT...A GAGATTATGTGGGGCTGAAAGCCCCACCTTAATCTATTCTGGGTATACCAATAGGGCAAAGCCC T,A [1208989,1208993] 1209064 30 73.3 0 TA.GG...T...............AA...T | ========== ====== ====== ====== ============================== ================================================================ ================== 23 30 95.8 40 ATTAAAATCAGACCGATTCGGTATGGAAAC # Left flank : AGCAGTATTCTTTATAAGTTTATTGTAATAATAAGCTAACTAGCTTAATAAAGCTTTATTACTGCAAAATATTTATATATGAGTTTGTCGATATTTTTTGATTAAGGTGTTTTTAGGTGTTTATTATATTGTTGTGTTTGTCTCGTTGAATAAACTCGGAATTTGATAAAAGTAATAATTAATTAGTATTTATCAATTTAGTGGATTTAAATTTAATTTCTAAGGGTCTGTTGGTTTAATCGTTTGGAATATTTAGGTTTATTAAATTATTTGGATTTTTAAAAATTAAGATTGGATATTTAGCTAAATAAAATTTCCCTAACCAATAAGTTAAATCTTCAAATTTAGAAAGATAAGAATACTTAATTTCGTTAAAAGAGAAAGATTTAAATATCATTAGGTTTATAAATAAAGATAGTTATCTATACTTAGAAAAATACACCACCAAAAAGTATAAATATTAGAAGTGTAATAAAAAATAGGTTGTTGATGATTGCCCT # Right flank : TTATTAGGAGATTTGGATTATTATTTATTTTTACCATTATAAATCCACACATCTAAAGATATAATAACAAAATTTAAAACTCCCAACTCACATATCTCTTTTTGGTGAGAACTGATGATAATAGAAATTGAAGGGATTAAACTAAAACTACACCCAGAAGTTTATGAACCAGCTGAAGACTCTATCTTATTGCTAAAAAATCTCGTCAATGTTAAAAATAAAGAGGTTTTAGAAATAGGTATTGGAACTGGATTAATTTCAATTGCATGTGCAAAAAAAGGGGCTAAAAAAGTCGTTGGAGTTGATATAAATCCTTATGCTGTAAAATTGGCAAAAGAAAATGCTAAGCTAAATAATGTTGATGTTTTATTTTTTGAAAGTGATTTATTCGAAAATGTTAATGGAAAATTTGACATCATCTTATTCAACCCCCCATATCTGCCAACCTCTGAGGATGATAAAATAAACAGCTACTTAAATTATGCATTTGATGGAGGAAA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATCAGACCGATTCGGTATGGAAAC # Alternate repeat : TTAAAATAAGACCGATTCGGTATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 18 1507562-1508969 **** Predicted by CRISPRDetect 2.4 *** >NC_013887.1 Methanocaldococcus sp. FS406-22, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 1507562 30 100.0 36 .............................. CTTTTAATTTCTCCATCAACTCTTCTCCACATTCTT 1507628 30 100.0 42 .............................. TGTTATCCCTCAATCCCAATATCTGGACAAAGGAGTATATAA 1507700 30 100.0 38 .............................. GAGTTCATAGGACCATGAGGGGGGCAACTCCTTGGGCA 1507768 30 100.0 43 .............................. TGTATATCATAATTACAATTCCAATAATCACAGATGAAATTAG 1507841 30 100.0 46 .............................. TTTCACTCAATAAACTATCTATCTGTATTGCAATCTCCATATCATC 1507917 30 100.0 36 .............................. CTACTTCTTAACCTTGAGCTGAAGCTTCTATGTCTG 1507983 30 100.0 38 .............................. ACGATTGTGTGTAATGAACTAAATTGCAATTACAACAA 1508051 30 100.0 35 .............................. ACATACTCTAAGAGATTCTCTAAGTCATTGTGATA 1508116 30 100.0 35 .............................. ATTTTCACACAATATAAGCAGTTCTTTCATTTCTT 1508181 30 100.0 35 .............................. GTTTTTACATCGATACAAGTAAGGTCTGAATTATC 1508246 30 100.0 42 .............................. TAAATCTTGTCAGCTCCTTTTAACTTTACATTTAAATCAGTA 1508318 30 100.0 34 .............................. TCCACTTCTTTCTTAACAGTAATAGAAGGTTTAA 1508382 30 100.0 39 .............................. CTCCTTTGTCATTTATTACTCTAATTGTTCCTTTATGGT 1508451 30 100.0 41 .............................. AAAAAAACAGATTACATCGTTCAAGAAATCATCAAATCTTA 1508522 30 100.0 41 .............................. TATTATTATGATGATAAATACACAATAAACTTGGACAGCTC 1508593 30 100.0 38 .............................. TTTTGTTGAAACTCAACAACACTTAAATATTTTGGTCT 1508661 30 100.0 37 .............................. CTGCCAATGCCTATGCCTCAAATACCTATGCCACAGA 1508728 30 100.0 42 .............................. GTATCAATGACGACTCTCATTTCTCCTTCTTCTGCAGTTGCT 1508800 30 100.0 36 .............................. ATATTATTAGTTTTTGCCTTTGGTGGTTTAAAATTA 1508866 30 83.3 42 ........C.....TC..A..G........ CTGGTAAATGCTTTTCTATAAACTTTATGATGTCTACAAATT A [1508886] 1508939 30 80.0 0 ........C.....TC..G..G.......T | A [1508959] ========== ====== ====== ====== ============================== ============================================== ================== 21 30 98.3 39 GTTAAAATAAGACCGATTCGGTATGGAAAC # Left flank : TTCATAAAAAAAGGGCTGTAGATGTCCCAGTAGTTGTTTTTAGAATAGAGAAATAAGATGAGAACAAAATATTTATATATGAGTTTGTCGATATTTTTTGATTGAGATGTTTTTAGGTGTTTATTATATTGTTGTGTTTGTCTCGTTGAATAGGCTTGGAATCTGATAAGGGTAATAATTATTGTTTATTATCTTGTTTAGAGGATTTAAATTTAATTTCTAATGGTCTGTTGGTTTAATCATTTGGAATATTTAGGTTTATTAAATTATTTAGATTTTTAGAAGTTAAGATTAGATAGTAAGTCAAATAAAATTTCTCCAACTAATAAGTTAAATCTTCAAATTTAGAAAGATAAGAATACTCAATTTAACTAAAAGAGAAAGATTTAAATATCAGGGGGTTTATAAATAAAGACAGTTATCTATACTTAGAAAAATATAGTGTCGAAAAGTATATATATTAGAAGAATAATAAAAAATAGGTTGAGAATGATTGCCCT # Right flank : TAGAGCATTAAACACTAAAAAAGAAGATTATATTCATGTAGAAGAAGAGATAACTTTAGCTATTTTGTATGGAATTATCGCAAGTAATCCCAACACCAAATATATTGTTATGTCATTAAAAACGCTCCAATCTGCCCAATCCTCAAATCCTAATAAAAACCCAATGGCATCAGATATTAAAATCAAAAAGGCAATAATCCCAATACCTAAACCAATAATAGAAGCAGTAAATAGATAAGAAATTGCCTTTATATCATTATCCACCGCCTTTTTTACTCCTAAGATATATGCTACTCCAACAGCCAATAAAGCCAATCCTCCAAATGCATCTCCCAAAAATAATGGCAATTTAATTTTAACTCCCAATATTGAGTAAAATCCAAGTATTATTTCAACAATTCCAGAAACTGCAAATAACAGTCCAAATATCAAAGATAAAGAAATTACGGTATTCCTTATATTCTTTATATCCATACTTAATCACCATAATTGTCGCTAAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAAGACCGATTCGGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched ATTAAAATCAGACCGTTTCGGAATGGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 19 1514423-1514807 **** Predicted by CRISPRDetect 2.4 *** >NC_013887.1 Methanocaldococcus sp. FS406-22, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================= ================== 1514423 31 100.0 40 ............................... ATGTAGTGATAAAGAAAGTCCATGACAAAGACGTTATCAA 1514494 31 100.0 38 ............................... TTTCTGACAAGTTAGCAAGTATCGGGAGTAAGTCCATG 1514563 31 100.0 45 ............................... ACACACTACTAAACTTGTTTATATCTGTTGTAAGTGTTAAAAATA 1514639 31 96.8 38 ..................G............ TTAGTTGTAATATAATATTTTTCAATGTTGCAATTGTA 1514708 31 96.8 38 ..................G............ TAAAATAACAGATGATTTAACTAAAGTAGTAAATGAAA 1514777 31 77.4 0 .......................T.TATTCT | ========== ====== ====== ====== =============================== ============================================= ================== 6 31 95.2 40 GTTAAAATCAGACCTCTTAGAGGATGGAAAC # Left flank : TACAAAACAGCGACTCTCATATAATCACCGTGGTGAATTTAATCAACATAAAAATTATGGAGTAAAGTATATATTTTTGTTGCTATAATTTTATTTTAAGGTTGAGATTATTGTAGTAGTTTATTGTAGTGTTGTGGTTGTCTCGTTGGATGTGTTTGAAATTTAATAAAGGTAATAATTATTTAGTATTTGTTAATTTAGAGGGTTTTTATTTGATTTCTAAGGGTTTGTAAGTTTGATTATTTGGAATATTTAGGTTCATTAAATTATTTAGATTTTTAAAAATTAAGATTGAATAGTAAGTTAAATGGGATTCCTCTAACTAATAAGTTAAATTTTCAAATTTAGAAAAATAAGAATACTCAATTTGATTAAAAGGGAAAGATTTAAATATCAGAAGGTTTATAAATAAAAGGTGTCATCTATACTTGAAAAAATATGGTTCCGAAAAGCTTAAATATTAGAAGAGTGATTAAAATTATATTGTCGATGATTGCCCT # Right flank : TCTTTTTAAACCCTTAAAATCAAAAGTAAAAGAGATATTTTTATCTCTTACTTAGTAATACTCACACATCTAAATATACAACAAACTATTTAAATTAGTAATACCAAAAGAGAAAAAATCCCGAGAAAATTTTTCAACTAGTATTAAAAATTATTACATAAATTGAATAAGATTTTATAATCTTCAAATGCATAAATTAATAAAACTTCACTTCCTAATAAAGAAAAATTTTAAATATATATGGTTTAAAATTTGGGTGTGGTTAATCTTATCAATCACAAATAAATTTTTTTGGTGTTAAATTATGGTAACTGTAATGAAGTTTGGAGGAACTTCTGTTGGTTCTGGAGAAAGAATTAGGCATGTTGCAAAGATAGTAGTGAATAGAAAAAAAGAGGATGATGTTGTTGTTGTAGTTTCAGCGATGAGTGAGGTAACAAATGCTTTAGTAGATATTTCCCAACAGGCATTAGATGTTAGAGATATAGCAAAGGTAGGAG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTCTTAGAGGATGGAAAC # Alternate repeat : GTTAAAATCAGACCTCTTGGAGGATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.50,-3.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 20 1693281-1694227 **** Predicted by CRISPRDetect 2.4 *** >NC_013887.1 Methanocaldococcus sp. FS406-22, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =========================================== ================== 1693281 31 100.0 42 ............................... CACTGCCCCCGAAGGGTTTATATTAGCATAGGTATGGCTGTA 1693354 31 100.0 43 ............................... TCAATTGCATCAAGGCATACAAATATGTCTAGTTTTTTCATAA 1693428 31 100.0 36 ............................... TCTGCATCTTTTACTTGTATTGCAGTAATTTTTGAA 1693495 31 100.0 38 ............................... ATATTAACTAAACAACTGTATAAACATGCACGAAGTTG 1693564 31 100.0 41 ............................... TATTTTGGTTCAAACAATTCTGAGAGTCTGAGAATCACATT 1693636 31 100.0 41 ............................... CAACAGTTGGTTTTGGCAAGGCATTTTTCATGTGTAATATT 1693708 31 100.0 38 ............................... ATTGGATGGATAGAGTGGGGAGGCAGAAGGATAATTGT 1693777 31 100.0 40 ............................... TCATCTGTATGTTGCATTTCTAAAATAGCAAAAGAGACTA 1693848 31 100.0 35 ............................... AGCCCAGTTTGCTCCATACTTGAGTATGTTTCCAT 1693914 31 100.0 41 ............................... ATAAGTTTTCTCCTAAATTCAAAAAATAATTTTTTCTTTTT 1693986 31 100.0 41 ............................... ATGTGACGTTCATCAGGATTATTTCACATTACAGGCAACAA 1694058 31 100.0 41 ............................... ACATAAAACCAAATCCACCACCACCAGCACTAAAACCTTTT 1694130 31 96.8 36 ..............................T TATGTTATTTTTTCGGGAGTCAATAACGGAACTACT 1694197 31 77.4 0 ........C.........A....T.TT.TT. | ========== ====== ====== ====== =============================== =========================================== ================== 14 31 98.2 40 GTTAAAATAAGACCTCTTGGAGGATGGAAAC # Left flank : TGCTTTAAAAACAGTTGAGTATTATAGCAAAAATCCTTATGATTTAGAAGAATGAGTTAAAAAGAGCACAAAATATTTATATGGGTTTTTTGATATTTTTATTTGTTTGATTTAGTTGTTTATTGTAGTGTTGTGGTTGTCTCGTTGGATGTGTTTGAAATTTAATAAGGTTGTTAATTAGATAGTATTTATCAATTTAGAGAATTTAAGTTCAATTTCTAAGGGTCTGTAAGTTTGATTATTTGGAATATTTATGTTTATTGAATTATTTAGATTTTTAAAAGTTAAGAGTGAATAGTAAGTAAAATGAGATTTCTCTAACTAATAAGTTAAATCTTCAAATTTAAAAGAATAAAAATCCTCTATTTTGTATATGAGAAAAAAACTTATATAGTGTTGGATTTATAAATGAAAGGGGTTATTTATACTTAGAAAAATATGGTTCCGAAAAGCTTAAATATTAGAAGAACTATTAAAATTATATTATCGATGATTGCCTT # Right flank : CTCTTTTAAGGATTAAACCAAAAGTAAAAAAGCTATTTTTATCTCTTACTTAGTAATACTTATACATCTAAATATACAACAAACTATTTAAGTTAGTAATACTAAAAGAGAAAAAATCCCGAAAAAATTTTCCAACCAGTATTAAAAATTATTACAAATTTAGACTAAAAAATCCTGAACTCTTAGAGGATAAGGTTATTTAAAAAACCTTGCTCCCTGTTTAGTTCCTCTTTTTTTCAATATCTCACTCACTCTGTTCATAATCTTCAACCTACCAAGATACCATTCTGGAGATACCTTAATGTTTTCTGGAACTTTGTCTTTAGATACTCTTTGAATTAGCACATAGGGAGATAGATGCTCTAAAAAATCACAAACTAAGTTTATATATTGTTTTTCATCTAACGTTCTGTATTCTCCCTTCCAATACATCTCCTCTAATTTTGTATCTTTAACAACAACTAAGGGGTAGATTTTAACTGCTTCAATATCCAATAAAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAAGACCTCTTGGAGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //