Array 1 1347401-1346374 **** Predicted by CRISPRDetect 2.4 *** >NC_017761.1 Helicobacter cinaedi PAGU611, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1347400 36 100.0 30 .................................... TTAGCACTATTTAGATACCTAGCGTGTTTG 1347334 36 100.0 30 .................................... GAAGAATCTCGTAGGCAAGAAGTGATTTAG 1347268 36 100.0 30 .................................... GAAGAATCTCGTAGGCAAGAAGTGATTTAG 1347202 36 100.0 30 .................................... TCTACATAATATTGCTTGTAAAATGCTCTT 1347136 36 100.0 30 .................................... AAGCAAAGATTGGAAGACGGAATGGACGCT 1347070 36 100.0 30 .................................... GTCATCTTTTAAAGTTTCTAAATCAAGTGT 1347004 36 100.0 30 .................................... TTCTTTAGCATTTCATTGGCAAAGCCTTTA 1346938 36 100.0 30 .................................... TTGCGGTTAAACTTGTTAAATTGTGCTAGA 1346872 36 100.0 30 .................................... TGTGGCAGTTTTTTGCTTTTTCATCTCTAT 1346806 36 100.0 30 .................................... CGAGTATAAAAACGGGTATAGACTTGTCAT 1346740 36 100.0 30 .................................... AAGATCCTCATCTCTATAGCGAGTATTCCA 1346674 36 100.0 30 .................................... AGATACCCATTATCATCGTAACTGCGTAAA 1346608 36 100.0 31 .................................... AGTATTTCGCTACACCCTTTATATTATACCA 1346541 36 100.0 30 .................................... TGTGGCAGTTTTTTGCTTTTTCATCTCTAT 1346475 36 100.0 30 .................................... CGAGTATAAAAACGGGTATAGACTTGTCAT 1346409 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =============================== ================== 16 36 99.8 30 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : CTTTTTTATGATGCAATTTAGCGTGTATATGAAAATATGCAAAGGGTTAAGCTCGGCAAAAAGCTCTCTAAATGTTGTAAAAAAGGTGCTTCCACCTTATGGTAATGTCCGCGCACTTATCATCACAGAAAGACAATTCGACAATATAGAAATATTATTAGGAAACCCATCATTTAATGAGAATGTTAATGAAGATAAAAATCTTGTGCTATTTGACTTTGACGAAAATGCGGGTGATTACCGCTATGGTATGGAGTATCAAAAACAAGAAGAATTGAATACAACTACTACACAACCAAAACAAAAAATCAAAAATAGGCAACCAAGCCTATTTGAATTCTAGGGTTTTGATAGGGATATGATTTACCCTGCGGAAGACCCCTTACTCCCTTATTTTAGTCCCTTCTTAAACTTCTATGTCGCGAATTATAAAGGATTTCAGGTAATTTCCAGCTTAAAATCCTTTGAAATCCCTATCTATAGGCACCAACAGAGAGCCT # Right flank : TAGTGAGATTGAAGCCAATTGGATACGAATAATGGCAGAGCTAGAGACACAAGATGGCGATAGTAACACTTCACAGAGTGTGGTTGAGTCAAAGCAGAATTTTAATGCCCTAAATGACTTTAAAAGTTATGCTGATGAAAATCAAAAGCAAACAACAAATGGCTTTTCATTTGGCTCTGCGTTTTCTAAATTGAAAGAAAAGGGCATTGAAGCAAAAGAAGCCATTGAAAAAAAGCAGAATGCTAGATAAGGTTAAAGAAAAAACAAGTGAGCTGACAAACAAAGGACTTGAAAAAGGCAAAGGATTGATTGAATCTCAAAAACAAAAAGGGGCTAACAATGAGCGAGATTAAGAATAAAACATTTGAAGATAAGTGCAATTTGTTGGGCAATACACTGCTAAAAGTTAATGATATTTTATCTAGTGATTTTAGGAGAGAGCTAGAATCTTTGAGTCCTTCTTCTATGAGTATGGATAAAAAACTTTTATTGTTTTCGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 1748910-1749472 **** Predicted by CRISPRDetect 2.4 *** >NC_017761.1 Helicobacter cinaedi PAGU611, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1748910 36 100.0 30 .................................... ATCCAGCTATATCTTCAGCACTACAAGATG 1748976 36 100.0 30 .................................... ATCCAGCTATATCTTCAGCACTACAAGATG 1749042 36 100.0 30 .................................... ATCCAGCTATATCTTCAGCACTACAAGATG 1749108 36 100.0 30 .................................... AGAGAAGAAACAGCAAGCTAATTAATCAAA 1749174 36 100.0 30 .................................... TGATTTTGGCAAGTAATGATTATTTGGTAG 1749240 36 100.0 30 .................................... TAACCTTTGCTTCTGTCCTTGCTATACTTG 1749306 36 100.0 30 .................................... TAACCTTTGCTTCTGTCCTTGCTATACTTG 1749372 36 100.0 30 .................................... TACACGCTCACAGCCCATAAGCTAGATTCA 1749438 34 86.1 0 ...................--.A.........T.T. | T [1749467] ========== ====== ====== ====== ==================================== ============================== ================== 9 36 98.5 30 GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : ATCTATACAAGCCCATACAATACAAAGCCATTATGCTAATTTTGCCTAGCCACCTAGCTTAAGATCTCTTAAAACCTTTAGACTGCCCCTCTTAACACATCTCATCTTTTAAAGCTTACGATTTTAGAATCTTGCCATACTTTTAAAACCTTGTCATACTGAGACTTTTGCCGAAGTATCTATATTCTAAAATTCTTATAAAACCCTCATATACGAATCCACCAAACCCAAAAACTCTCATTTATAATTTTTATTAGATATTATAAAAATGTGTAAAAGAATAAAGCCTAAAATAAAATTCTCTATAAAATACCAAGATGATTTACTCTATTTTAACACCTTTTACCTATCATTAAGGCATTAAAAGCCCTTGTGGCATTCCCTAGTTAGGCGTTTTTTGACATTTTGGTATGACTTGTTTAGATAGAGTTGCGTGTTTTAGGATATTTCAAGCTTTGAAAACGCTCAAAGCACACACTAGAGCCGACTTGGAAAAGTCA # Right flank : CACTCTAATGCTTTTACTTGTTGTATCAAAGTTTGTCTATCTTATGTCATTACTAGGGCTTTGCCAAAGTATATAATCCACACAAACAAAAATCCTGTTATTTTTCTACAAAGTCTTGTAAGATTCTTAAATTTAGCTAGAATGCTGTGTTAAAAAATGACATATTTAAAAGGAAATAGATGAATAACTTCAGTAAGATTGGCTTTGTTTTGGCGACTTTGGGTAGCTCCATAGGCTTGGGACATATTTGGCGGTTTCCCTATATGGCGGGGGAAAATGGCGGTGGAGCGTTTGTTATCTTTTATCTTATCTTAGCCATTCTCATTGGTGCGTCTATGCTGATGGCGGAAATGCTCCTTGGCAATAAGGCCAGAAGCAATCCTTTGGATAATTTTACTATCCTTAATAATCTTAATAAACTTCCACCAAACACGCCCACACAAGAGCATAATACCACAGATTCTAAATCTAGCTCATCACTTATGTGGCTTGGCTTTTCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //