Array 1 200308-199812 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNEM010000002.1 Holdemania sp. 1001302B_160321_E10 NODE_2_length_212788_cov_45.6199, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 200307 32 100.0 34 ................................ GCCAAGTGTTTGACAGCGTGGTTATTTGTGAGTG 200241 32 100.0 33 ................................ TTTTCCGGCCGCAATGTCCATCATTATAAAAAC 200176 32 100.0 37 ................................ AAACCTTGCTGTGTTTCTGTTTTTCTGACTGATACAA 200107 32 96.9 34 ...........T.................... GGCGAGCAGTATGACACGCTGATTGTCTTTAAAC 200041 32 96.9 33 ...........T.................... CTCGGCCTGAGTTTTGGTCTTGTCGATTTGTAC 199976 32 90.6 35 .............CA........A........ TCCATTCGCTATCCAGCGAGCGCTTAGCGCTTTCC 199909 32 96.9 34 ........................G....... GACCTACTCATTACGAATGAATTGCTCTACCAGC 199843 32 84.4 0 .......A...T........A..A.......C | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 95.7 34 GTCGCAAGCTACATGCTTGCGTGGATTGAAAT # Left flank : ATTCAGTCAATGAAGACTGGGTTAATTCTGCGAACGCAATTAATGAAGTTGGGTGTATTCATACGGTTCAGGGTTATGATCTTAACTATGCGGGAGTGATCATTGGTCCGGAGCTGGGGTATGATGAGCAAGCGCAGCAAATTGTAGTTCATTCGGATCAATATTTTGATCGCTTTGGTAAAGCCGCGATTCATGATGAAGAAATTTTGAAGAAATATATTCTTAATATCTATAAGGTTTTACTAACGAGAGCCATTAGGGGAACTTATGTTTACGTTTGTGATCCTGCATTGAGAAATTATTTTAAAACTTGGATAGCTTCTGCGGATGCGGTGCGAACCTGAAGTGAACATGAAATCCCTGGGAGGTTCGCACCGGGGACTTTGTAAAATTGTTTAGATTATAGTAAAATAGTATGGTAAAAGGGCAGAATTTTTACTAATCTGATGATAGATTCTTTTTAAAGATACATCCAATTAGCATAATGTTACTTTTTTGCA # Right flank : ATTATTATTTTGTTGTAGTAGAAAAAGCATGCCTGAGGAGCCGTGCTTTTTTACTGTTGATTGGACGTTTAAGCTAATTTTAAACATTTATTAAGCTCATCTCTTAAATGATTAAATTCCCGAGAAAATTCCGGAATGAAATAAATCTGTGAAAACCTGGGATTTATCCAACTTTTCTTGGATTGCACGGAGGGGAATGGTATAATCAAAAAGGTGATTATACATGTTTCATACTTCCGATTGTAAAAAATTTAAACGATGTCAGAAATATTTCTGGCTTTCTAAAAAAGAACCGACGCCGCCATTCTCTCCCTATGTCAGGATGGATGAGGATTTAACGGCGCTGGCCTGCCGGAAATTAGAAATTAAAGAATACTTTCAGGGGGTTCGCGGCGATGATCCGCAGCGGGCTATGACAGCGCTGGAAGAATCAGAATGGCTGGTATCCGCCCGCTTTGAATTCCATCAGCTGCGTGTCAAAATTCCCTTTCTTCACAAAA # Questionable array : NO Score: 8.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAGCTACATGCTTGCGTGGATTGAAAT # Alternate repeat : GTCGCAAGCTATATGCTTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCAAGCTACACGCTTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 20411-20040 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNEM010000008.1 Holdemania sp. 1001302B_160321_E10 NODE_8_length_146229_cov_45.6416, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 20410 33 100.0 34 ................................. AACTCATTGCCAATACAGTTATAAAGCAATTCTG 20343 33 100.0 34 ................................. AGGGCCGCCGGAGCGGCGTGGGATTATCTGCAAG 20276 33 100.0 35 ................................. CTTTTGTTGATAATGACGATCTCATAAACTTTGAG 20208 33 100.0 35 ................................. CATAGCTGCGGAAACACTCATGACGCCCGTTGAGG 20140 33 100.0 35 ................................. CCGTTAACTACGATGGTGAAGATTGGTCTGTAGAG 20072 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 6 33 100.0 35 TTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Left flank : GAAGCTGATAATTGTCAGCAGTTAATTGAAAATCCTCAGGCTTTATCTTCGGAAGAAATGGCTATGCGAAAACTTCGCGGGCAGTTATTATTGGACCAGCAAGCTGCCGCTGAAGGATATACAGAGTGTATACAAAGTGAAATTGATTCTTTTATACGTCAGGAATGTCTTATCAATCGAGAAGGAAAATTATCTTTATCCGCTGAAGGATTGGGAACTTTCTGGTTTAGCTTATTGAATGATGCTTATTATTAAAAACTGATAAAGGTCAGGAATGTCTTATTGGAGACAAACCTGGCCTTTTCCTAAAATTAGTAATGAATATTTTCAATAAAAATTGAGGATATTCTGGTGCGAACCAGAAGTGAACATGAAAATCCAGGGAGGTTCGCACCGGAAAGATGTGAAAATTGAAGGAAATATTGCAAGTGTATCCAAGATTGTTTATCATAGAATTGAAATAGGAAACAAGTAAAAGTCATTGAGTTTCTTATTTGCGG # Right flank : TATAAATATCAGTTTCTGAGCACAAGCAGCGTATGAATTAAAACTTTTTCAAATCATGTGAATTAATTAGATTGAACAAAAAAGTCTCGCTTAAGAATAAGTAAGATTTGCTCCAACACAGAAATGTTTTATTGGAAAACTCATGTCAAACATTGTATCGGTTATTATTAAATTGCTCCGCTAATCTGCTTTACAAAAAAGTAAATCAATAACTTAAACAAAAGAGTTCAGCTAGCAGAACTTGAAAAATCAAAACTCCGACAACCATGAAACCAACACGATTGTCTATATTCAACCCCATTATTCATAAAAACTCAAAACATCGACCAAAATCATAAAAATTCAAAAAGTGGTACGATTTTGGTACGAATGGAAAACTAAGGAATCAAAAAAGCCCTTAACTAAGGGCTTTATCGTTAACTGGTGCCGATACCCAGAATTGAACTGGGAACTGAGCATTACCATTGCTCCGTTTTACCATTGAACTATATCGGCAGGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 24508-26021 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNEM010000008.1 Holdemania sp. 1001302B_160321_E10 NODE_8_length_146229_cov_45.6416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 24508 33 100.0 33 ................................. GCGGTCTCGTTTATATAGCTGATCAACAATTAA 24574 33 100.0 36 ................................. ACCATTGATATAAAAAAGCTTAAAAGCCTGCTACAC 24643 33 100.0 33 ................................. CGCCATGGCTGGATGTCATAACAGCCATACGGG 24709 33 100.0 35 ................................. TTTTTATACTAACATTAAAAGCTATTCTATTATGG 24777 33 100.0 34 ................................. TGTTTGTGGCGGTATTCTTCCAACAAGTGCATCT 24844 33 100.0 35 ................................. AAAGCCTTCAACTATCACAAAACCGTCCACGACAC 24912 33 100.0 34 ................................. TGTGTCATTGTAGATTGATTCGATGCGTTCTTGG 24979 33 100.0 35 ................................. ATCTTTCTTGAATTTAAGACGGCCATCTCCGCCGG 25047 33 100.0 34 ................................. TCAGAGGTTCCTTCTTCTGTTTGGGATCCGGTCA 25114 33 100.0 36 ................................. CGGGTTTATGATTGAGACCGACATCAAAGATTATGA 25183 33 100.0 33 ................................. CTTTCCATACGTGCGCTCCAGCCAGGAACCTTC 25249 33 100.0 33 ................................. CGGCGAGGCAAACTTAGCGGCAAGTAATGCTTT 25315 33 100.0 35 ................................. TGGTTCGTGGGCTAGTTATTCGTTGGAAAAAAAAG 25383 33 100.0 35 ................................. CCTGTCTCTTCCTGCCATTTCATTATCCTCTCTTT 25451 33 100.0 35 ................................. GATTCCCTGATTGATCTGTGCTTCGTCGCCGTATG 25519 33 93.9 35 ...............................TA GATGGGAGTCTCAATAACGACGATGACGGCCGCCG 25587 33 100.0 33 ................................. TTGCTTTTAAGCCGCAGTAACCGCGCTTCTGGG 25653 33 100.0 33 ................................. ACGGCCGAGAAGATAAGCCATAGCGGCAAGTTC 25719 33 100.0 36 ................................. TCTTATTTTTGCGGCAGATGTATCCTCTTTTTTTAC 25788 33 100.0 35 ................................. CCTCAAAACGACCGGATATAGATCACGGACAGGCT 25856 33 100.0 34 ................................. CGCCGCCAAGTTTGCCGCTTGGCGCACCAACTCG 25923 33 100.0 33 ................................. TTAAACTTTTAAGTTTGAGCTCCATTTTTTTTC 25989 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 23 33 99.7 34 GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Left flank : GCAGATGATTTCGGATTCACTGTGCGGACAGCGCTGGGCGAGCAAAGCGAGTGTTGTTTTCTATTGGTCGCTGGTAGCCTATCGTTGCGAGTGGCGATATGGGATTCGAGCGCATCGAGTGGCATTGATCGATGTGGGACATGTTGGACAGAATTTATATCTGGGCTGCGCCGCGCTAAATTTAGGGATTTGCGGGATTGCGGCGTTTGATGATAAAGTTTGCAGTGACATTTTTGGATTGGATAAAGATGAGGAATTTATTATTTATACTGCACCTGTAGGAACGATTAGTTCTGCGGATATTGAGAAAGAAAAAGGTTTCTATCGATTTGTGGAAGAAGAAGGTTTTTAAGTGCGAACGTGAAGTGAACATAGAAATCCTGGGAGGTTCGCACCGGGAAAATGTGAAAATTAAAGAAAATATTGCAAGTGTACCCAAGATTGTTTATCATAGAATCGAAATAGGAAACAAATAGAAGTCATTAAGTTTCTTATTTGCC # Right flank : TCTCTTTCTTAAATTTATCCATAACCTTAAGACATGTCCCACTGGCAGTGCGTGAATTTTTGCCAATCGTTTTATAACTAGAATTTTATCTCAAGCAATGTATTGATTGTTATGGTATAACGCCGTTTTTTTGTTGTTAATCTAATTGATAGAAGTTGACTTTAGTTAAATCTTATTTTCTGGTAGGAATAATTAGAAAATGGGATATAATATAATTATTAAAGACTGTTGTATTAGGAGGTGTGTTTATGTTATTAGCACACTGGGATGGGAAAGAACAACGAGCACAATCCTTAAAAGATCATAGTGAAAATGTAGCAAGAATGATGGAAGAAAATTGTTTTTCGCTTGGCCTTACATCAACTGGACGATTAATAGGATTACTCCATGATGCAGGGAAAGCCAATCCTGTATTTCAGCAATATATGCTTGAAAATCAAACAGAGAAGAAAGGGAAAATTAATCATTCGGCAGCAGGTGCTCAGATACTAAGGAAACTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 80167-79735 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNEM010000008.1 Holdemania sp. 1001302B_160321_E10 NODE_8_length_146229_cov_45.6416, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 80166 33 100.0 32 ................................. TTTTTTGCCATAACTGGCGCTCTCTCTACTTT 80101 33 100.0 34 ................................. CTCAACAAGAAAATCCGGTTGAAGCTGAAATTTC 80034 33 100.0 34 ................................. TTATTCGGTTTTAAATACTCATCTATTCTTCGAA 79967 33 97.0 34 ......T.......................... CCTTTATTCTTAAATTGACATTTTTCGGCATTTC 79900 33 93.9 33 ......T..............A........... TGCACCACTATTTCGCCCCTCTGACCGCTTAAC 79834 33 90.9 34 ........T..............CA........ CTGCTGTGGTTTTGCTGAAGTAGCCATACAGCAT 79767 33 84.8 0 ......T.....A.......C..TA........ | ========== ====== ====== ====== ================================= ================================== ================== 7 33 95.2 34 GTCATACCGCGCGAGCGGTATGTGGATTGAAAT # Left flank : ATGGTTTATTTCCAGATCGTGCAGCAGTTTGAAAACAATTTGATTTATCCGCGGGTTGTGGGGAATTCCGTAGGTCTTCCGGGGATCTGGGTCTTGTTATCCATCGTAGTATTCGGCGGTCTGTTAGGGTTGTTCGGAATGTTGATTGCAGTTCCGGCAACGGCAGTTCTCTACACCTTGTTAGGTGAATTCGTCAATGGCCGGATGCGGAAAAAGGGACAGATTTTGGATGAATCCGGATTGCTCAGTCTGGATTCAATTTCAAATTCTGAGCAGGACTCTTCATCTTCGAACGAGAATCAATAAGCTTAAGCGCAAGGTCTTCAAAGGCCTTGCGTTTTTTGTCCACTTGGGTGCGAACATGAAGTGAACATAAAAACCCAGGGAGGTTCGCACCGTAAAAATGTGAATATTAAGGAAAATGTTGCAAGTACACTCAAGAATGTTTATGATAAGAGTGAGATAGGAAACATGTGATCTTAATTCAGTTTCTTATCTGC # Right flank : CTAAGACTTGTAGGTCTGCCACTACACCCGCTCACACTTAAAAACCTGTTCTCTCCCGCCTTAAGCTGAGAAAACAGGCTTTTTTTATTTCACTCTAATCTACATCCTGATCTGTATCATTCCAAGCTCGGATCGTACAACCATCCTGATCCGGCTCCGCAACATAAACCCGGGCCGGATGATCCTGATCACTGACCACGAAAGCAAACTTGATATTCGTGCCAACACCCCAGCGCCCTTCCTTATCTACGCAAATTAAGGAAATCGCGTCGGCCCGGCCCCGTTTCCGAATTAACTTTTGCGTGAATTCCGCTACGAGCGATGAAGCCGCTCTCTGAGGATCCTGTCCCTGCTGCAGCCGGCGTACCACCTCATAGCTCAGACACCCTTTCATGATTTCTTCGCCCACGCCCGTAGCAGCCGCAGCCCCGATCTCACTGTCCGCATAGAAACCACTCCCGCAGACCGGTGAATCGCCCACGCGACCCGGCCTTTTCATG # Questionable array : NO Score: 8.87 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATACCGCGCGAGCGGTATGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCATACCGCGCGAGCGGTATGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //