Array 1 65784-66292 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOOG01000021.1 Escherichia marmotae strain SC326 NODE_12_length_112752_cov_97.911_ID_385, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 65784 28 100.0 32 ............................ TCCTGTGGGAAGTGGGATTTGTCGGATCTTCC 65844 28 100.0 32 ............................ TCAATAGTCCCCAGCATAGCTACGGCGTTAAT 65904 28 100.0 32 ............................ GCGTAACTTCAATCAACGCCCGCTCTGCCAGC 65964 28 100.0 32 ............................ TCGACGATTTCAACAACTATCTGAACGGCAAC 66024 28 100.0 32 ............................ AAGTCCGCTCATATTCATTGTGAGATTAACAG 66084 28 100.0 32 ............................ TGTTTGTATGATGTTCGCGATTTCGGTAAGGC 66144 28 100.0 32 ............................ ACATCGCCACCGCCGAACGGTTTGTCTTCTTG 66204 28 100.0 32 ............................ AGCATCTGCATGGTGCCCGTGGTCTTAACAAG 66264 28 89.3 0 ..C.................T...C... | C [66287] ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AATTCATTGTCGAGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGTGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCACAAAGCGGAAGCAGCGCATTAATCAGATTGTTAAGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGTGGGGGAGGTTCAGCCCCTTTTTTTGATGATGATGGTAAGTTGTTGATAATTAGTGCTGCTGGACGGTAAGGATAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAGTATGTCACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACGTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCTGGAGTGATGGTTGGTTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 80450-81498 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOOG01000021.1 Escherichia marmotae strain SC326 NODE_12_length_112752_cov_97.911_ID_385, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 80450 28 100.0 32 ............................ AATTTTGCCCAGCGTTCAGCATAGCGGCGCTA 80510 28 100.0 32 ............................ GCTGGCAGTGATAAGTCTGTATATAAAGTTAA 80570 28 100.0 33 ............................ CGCGCAGTGATAAATTGTCCGCCCTGGCGGAAT 80631 28 100.0 32 ............................ ACCACGCTGGCTGCAAATATCGTGGAAAAATT 80691 28 100.0 32 ............................ ACCCATTGACCGGGAAGCGCTGGCAAAGTTGC 80751 28 100.0 32 ............................ GAAAACGGCTCGGGGGCGCTCGGCCCCGAAAA 80811 28 100.0 32 ............................ GATCCGTGGGAACGCGCCGCCGCAGGTATTAC 80871 28 100.0 32 ............................ AAGTAGTTTCAGCGGGATCAATAAAACACACT 80931 28 100.0 32 ............................ TTACGCTGTAGAAATAGAAACAGGCAACTGGT 80991 28 100.0 32 ............................ CGTAGCATGGGTATAGTGAGGTTGCCGTGTGC 81051 28 100.0 32 ............................ TGGCTTATGCCGGGGTTTTTTATAGGGGAAAA 81111 28 100.0 32 ............................ CTTCAGACCCACCAGCGACGGCATTTTTTTTA 81171 28 100.0 32 ............................ GAAAAATTCGCCTTTGGATTCTCCGCCTTTTC 81231 28 100.0 32 ............................ AGCAGGTACGCGCAAAAACGCAGAGGAACGAC 81291 28 100.0 32 ............................ GTGATGGCCGATCCTGGGCGTTCTGGTCAATG 81351 28 100.0 32 ............................ CTGGGCCATCATAACGTCGGAGATTGTCATTC 81411 28 100.0 32 ............................ ACGGAGAACATTTTCGCCTGGTTGTCCGTAAT 81471 28 85.7 0 ...........T........T..TT... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACGTGTTTTTTATTTAAGGCGCATTAATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGCTGCCTTACCACATGGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGCAAAACGGTCAAGAAGAATTTATTTAGATTGATTTGTTTGGTTACGCAATGAACACACGATTCATTCGCCCGAGATTATGGTCGTATGCGTTCTGATCAATTGTTTATCAAAAGCTACGAGGGAAATATGAGAGTGAAGAAATACCAATCGACCCATTTTTTAGAGTGACATGTAACTCATTGATTTTGTTTATTACTATTTTGACGTCTCGAAAAAGGGTATGAACCTGTGATTTTGTGATTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTTCA # Right flank : AATCCATACCCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //