Array 1 37497-39291 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT629773.1 Gardnerella vaginalis strain DSM 4944 chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37497 28 100.0 33 ............................ CCTTCACGTTCTTTTGCTTTACAAGTATCCTGC 37558 28 100.0 33 ............................ CGGCACGGTTAAGCCGTTTGATATGCCGCTCCC 37619 28 100.0 33 ............................ CTCATCATTGGCTACACTCTCTGGATGCTTTAA 37680 28 100.0 33 ............................ CCGTAAAGTTTGCATAATGCGGCAACCAGATGC 37741 28 100.0 33 ............................ TGTGTTTTTACGAGGTTTTATACCTTCAAAAAG 37802 28 100.0 33 ............................ TCGTTAATGCGTGCTAAAAAGTTTTGTAAATAC 37863 28 100.0 33 ............................ TTATAAGCTGTAATTATAGGTGTAATATCTTTA 37924 28 100.0 33 ............................ TGGTTTGACGGTTCAGAAACAGATGTTTATGTA 37985 28 100.0 33 ............................ TATCAATTTAAGAGCGAAAAGAAAAGTTTTTAT 38046 28 100.0 33 ............................ CCGATGCGCAATGAGTGATTATGATTTTAGAGC 38107 28 100.0 33 ............................ CCGATGCGCAATGAGTGATTATGATTTTAGAGC 38168 28 100.0 33 ............................ CACTCTTGTAGATGCTGTGCTTGAGCGGCTTAT 38229 28 100.0 33 ............................ GCGTCGTGCCGCGGCGTGCGATAGTGTCATCGA 38290 28 100.0 33 ............................ TTGTACTAGGTGGCGCAATCGATAGTTTTATTG 38351 28 100.0 33 ............................ TATGGCATTAAACGGCATTGACATATCATGGTA 38412 28 100.0 33 ............................ TATTTTCCTTATTTTGAGCTAATAATAAATTTA 38473 28 100.0 33 ............................ TAATCAAATTATTCGGATACTAAAAACCAAACC 38534 28 100.0 33 ............................ TCGTCATCACTCCATCCTTAAGCACAGGCTCAA 38595 28 100.0 33 ............................ TGAGCTTGTAAACGCTCTTGTAGATGCTGTGCT 38656 27 96.4 33 .....................-...... GTATGATGCATTGACGTGACATCTAAAGAACAA 38716 27 96.4 33 .....................-...... CTAACACGTTAGCAGATGTAGCCATTCGTGAAC 38776 28 100.0 33 ............................ CAAACGTTCTTCATTGCTTGCATTGCAAAATTA 38837 28 100.0 33 ............................ CCCAATGGCTTCCTCATCTCTAGCACGCTGCGC 38898 28 100.0 33 ............................ CTTGTATTCTCAATCAGAGAATACTTTGAGTAT 38959 28 100.0 33 ............................ CGAAGCCTGCGAAGTGTTCCTGCTGGAATGTTT 39020 28 96.4 33 ..........................T. CACGCCCGAATTGGGTATACTAAGTGTGTCGTT 39081 28 100.0 33 ............................ TGTCAAGTGTACCATCTTTTAATTCTTGTGCTA 39142 28 100.0 33 ............................ CGTATCATACTTTCTGAGTTTTGTCCTTATTGT 39203 28 100.0 33 ............................ CGAGTTGAGCGGCAAAGTCGAACATGAAACACA 39264 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.6 33 GTATTTCCCGCATACGCGGGGGTGATCC # Left flank : TTTATTCCTAATGAAATTATTGAGCTAACTGGTATTACATCCAACATGCTTGAATCTTATGGTGTCGGATTAGATTTAGCATTAAGAGAATTTATTGATTTTGTGGGAAAATTACCATTATTAGGATATAACGTATCGTTTGATATTGGATTTTTTAATTCGGCTTTATTCTCATTAGATGAGAAACTCAGCAGTGCTTTTTCTGTTAATAAAGTTATTGATATTTCACGTTTTGTGAAGCATGATAGGAGGTTTTTGAAAAATTATCAGTTGAAGACTGTTCTGCATGAGTATAACATTTCTGAGTCAGTTCCTCATAGAGCTCTCCTGGATGCTAGGCTAACGGCGCGTCTTGTTCTTAATTTGACAGAATTGTTAAAGTTTCTTTCATAAGGTTATAATTTTGAAGGATTGTGTGCAACAATGGGTTAATTTTGAAAAGTAAATAGTTTTTACTATTTAGTCTTGGAAAAATAGCTATTTTATTGGGATTTTTAAGT # Right flank : CTAAGCACCCTAAAAACGCGGCGGGTATAACCACGTCTTTTCCGCATACGCTGGATAAAACCTACATGTGCGGCAAGTGTGGTTGTAGTAGTCTAGTGGTGGATATGATAGCGGACGCACAAGTGGAGGTTAAAACGCTACGCGGCGTATTATATCGCGCGCGTTGATTGTTTTTATAATAGGGTAGGCAAATAAAAACTTGCCTACCCCTTATTTTTACTGTTGATTGTTTGACTCTGCTTTAGCTGCTTTACTAACCGCCTCTTGCAGCGCTTGCCATGATGACGGCAGCTCTACAGGGCGATGTGGGCGGCGCGCAGCCCAATCACGTATAATGTCATAATCCCACGCAGGCTTTGCTGTTAGCGCACCAACTGAGTGCGTTGGTAGTGGGATCAGACCGCGGAGGCTACTCGCATCTTGACCATCTAAGGCTGCACGCCTAGATCGCACCAAATACTGGCGCATAGACTCGTAGCCGACGCCAAGAAGACGCGCAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //