Array 1 32510-31281 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEIP010000006.1 Escherichia marmotae strain BS116-C NODE_6_length_196911_cov_214.846266, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32509 28 100.0 32 ............................ TCGCAGGGCTTGCGGGAGAAGGCAGTGAATTA 32449 28 100.0 32 ............................ CATAATAACACCAAATATTTTACTGTTTAAAT 32389 28 100.0 32 ............................ AGCACCGTCAACCTCACCCACCCACGAAATAT 32329 28 100.0 32 ............................ GCAAAGGGTTTTCGACCATTACCCAGATAATT 32269 28 100.0 32 ............................ GGAGACGATATCCGTAGCCGCAGACACAGCAG 32209 28 100.0 32 ............................ GATGTGGTGAGAAAGTTGCTCCGCCAGAGTGT 32149 28 100.0 32 ............................ TAATCTCACTGCTACTGTGCCAGCAACTGGCG 32089 28 100.0 32 ............................ GAAAGTGCCTTGGCGCTGGCGGTAAATTTCGT 32029 28 100.0 32 ............................ AGAGGGCGCGGTCGCGCCCTTAAGGTCAAAAG 31969 28 100.0 32 ............................ CTGGGTTATCTCCACGCTCGCCCGGTTAACTA 31909 28 100.0 32 ............................ TGAAAATAACTTCTGATATTGTTGGCGATGGT 31849 28 100.0 32 ............................ TTGGGCCATTGCGATAGACGCTGCCGGTATTG 31789 28 100.0 32 ............................ GCAATAAACCGTTTGCAACACCAGAATGGTGC 31729 28 100.0 32 ............................ CGTAGGGACGCCGTAACCGCCGATTACATAGT 31669 28 100.0 32 ............................ TGTACCTGCGCTTGTTGCAGCGGGTGCTACGG 31609 28 100.0 32 ............................ ATAGTGCGCAACGTGCGGGAGTCCATACAGAT 31549 28 100.0 32 ............................ CCCAGATAGTTGATAACTTCGTCGCTGTCAGC 31489 28 100.0 33 ............................ CCAGCCAGCATGATTCCGCGCGTTAATGTTGGA 31428 28 100.0 32 ............................ TGACGTAATAAATGCAATGCAAATGCTCGCTT 31368 28 96.4 32 ...........C................ TCGCTCCGCCAGTGCAACTGGTAGTAGAGTGC 31308 28 89.3 0 ....................T..TT... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGTGTTTTTTATTCATGGCGGATCAATGCAAAAAAAGCCCGTACTTTCGCACGAGCTCTTCTTTAAAGATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATAGAGATTGATTCGTTTGGTTACGCAATGAACATGCTGTTTGCGTGACGGAGATTATGACCGTATGTGTTCTGTTTAATTGTTTATCAAAAACTATGCAGAAAATATGAGATTGAAGAAGTAACAAATCGACCCTTTTTTTAGGTTGAAATGTAACTCATTGATTTTGTTTATTGCTATTTTGAAGTCTGGAAAAAGGGGTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ATCCATACCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAAAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48269-46798 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEIP010000006.1 Escherichia marmotae strain BS116-C NODE_6_length_196911_cov_214.846266, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48268 28 100.0 32 ............................ TTGCACCATTCTGGTGTTGCAAACGGTTTATT 48208 28 100.0 32 ............................ AGAGACAATGCCGGACATACAGACACGGGAAC 48148 28 100.0 33 ............................ GCTCGCACCACCAGCGCCACCACCCACACCGAT 48087 28 100.0 32 ............................ GAGATGTTCCCCTGGCGGCACCCGGTTTTATA 48027 28 100.0 32 ............................ TGGTGAAAAACTTTCCCCTCGGCCTGCCAGTA 47967 28 100.0 32 ............................ GCTGACATTGCACCCGCAGCGATAGCAAATCC 47907 28 100.0 32 ............................ ACATCGCGGCGGTTCCCATTGCGACCTGCTGC 47847 28 100.0 32 ............................ TCAACCGCTACGCCTCCCGCATGGAAACTGTC 47787 28 100.0 32 ............................ ACTGTCCGCGATAATTACTGATTATTAAAATG 47727 28 100.0 32 ............................ AGCCGAAATAGAAAATCGCTCGTTTGTATTCC 47667 28 100.0 32 ............................ GCCGTTCGATATTTTACGCCCGCAACGCCTGT 47607 28 100.0 32 ............................ ATCGCCCCAGCAATACCAGCAGCGGCTTTCTG 47547 28 100.0 32 ............................ CAGGTGAGCCGCGATACGACCGCGCAGACGTT 47487 28 100.0 33 ............................ AGATAAACCGAAAACATTCAGGGCTTCTTGTAC 47426 28 100.0 32 ............................ GGTACGCCGTTGCTTGCCGCTGTGGTGAGACC 47366 28 100.0 32 ............................ TTGACCGTGCGCGGGTTCAGAACGCCGTCGTC 47306 28 100.0 32 ............................ ACACGCAGGAAGAGATCCGCGAGGCTATCAAC 47246 28 100.0 32 ............................ CTGCGCAACATCCACGCCGCGCCCGGTGATGG 47186 28 100.0 32 ............................ GCAGTCGCAGCGGCAGAGTAATTGCGCGTTTC 47126 28 100.0 32 ............................ AGTTCAGGCGCACGTTTGCTGTACTCATTAAG 47066 28 100.0 32 ............................ AGCAGTTCAATCGCTGGCTCAGGCGTCTGAAT 47006 28 96.4 32 ................A........... AGGAGCATTTGCGGCAAGGCCTGGTTGTTGCT 46946 28 100.0 32 ............................ ACGACGCTGTCGCGCTGGCGTCGGCGTGGAAC 46886 28 100.0 32 ............................ AGCATCTGCATGGTGCCCGTGGTCTTAACAAG 46826 28 89.3 0 ..C.................T...C... | C [46803] ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCACAAAGCGGAAGCAGCGCATTAATCTGGGGTCGTGAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCTCGTAAGAGGTTACGGATTTTTTTGTTTGTGAGGTGGGGCGGTAAAAACCCTATTTTTGAGGGCGAAGGTAATTTATTGATAATTAATGCTGCTGGAAGGCAAGGATAAAAAAGGGGCTGGACAAGGAATTTTGCTGGTTTCGCTTTATTAACAATGGGCTAAGCGTGTAGTATTTGA # Right flank : TACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAGTATGTCACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACGTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCTGGAGTGATGGTTGGTTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //