Array 1 3056-5484 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWML01000011.1 Haemophilus influenzae strain 60295_NP_Hi1 60295_NP_Hi1_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 3056 37 100.0 33 ..................................... CAACTTCTTCGGCAACATTGTCGAAGCGGTTCC 3126 37 100.0 31 ..................................... GTTTTCTATTTATCAACTTTTAAAAATAACG 3194 37 100.0 33 ..................................... AGTGCAATAGCCACTATTGAACACTTTAAAAAA 3264 37 100.0 34 ..................................... TTTTCGCCATAGCCAAAGTATCGCTATTGATTGT 3335 37 100.0 31 ..................................... GAATCCAATACATTAACCGTTGCTGAGAATG 3403 37 100.0 35 ..................................... TGTTTTCCTCTTTCTGTTTAACTGTTACTTATTAT 3475 37 100.0 34 ..................................... TCCTTTATCGCTAAAATCACACTGTAAAAAGCTG 3546 37 100.0 33 ..................................... TCATTATCGCCCACACTTGCCAGTTTCGTGGGT 3616 37 100.0 36 ..................................... GCTACGTTAGATAACACATTACCAACACGTTTAAGT 3689 37 100.0 33 ..................................... ATTATTAAAAATGACACAAATTCTATCTTCTAG 3759 37 100.0 34 ..................................... TGTCAAATCCGTATCATAAAAAGCAGTTAATTCA 3830 37 100.0 36 ..................................... TTCCTCTTTCTGTTTAACTGTTGCTTATTATACTTT 3903 37 100.0 34 ..................................... GCTTCAACAATTGTAAGCTCTACGCTTGCCTTGT 3974 37 100.0 35 ..................................... ATTGAAAAAGTAGCTAAAGTTAGATTTTATCAATG 4046 37 100.0 30 ..................................... GTACTAGAATGAATATTAAAGCTAAAATTT 4113 37 100.0 32 ..................................... ATAGCTATTGCGTAATAGTAGCCAGTATCTAC 4182 37 100.0 34 ..................................... CGTTTTACTGTTGGTTCAACTGAATCCATAATTG 4253 37 100.0 34 ..................................... ATGTTTTGAATAGTACAGTAACCAGTATCAAAAA 4324 37 100.0 33 ..................................... CTGCAATGAAGTCATCTTGTTGTGGTTTACTTA 4394 37 100.0 31 ..................................... CCATTTAAGCAATTCATAAACTACTAAGCCT 4462 37 100.0 32 ..................................... ACTGTAATGGTTGCGGAGAATGCTGAAGAGAT 4531 37 100.0 32 ..................................... TTTTTTACTTCCATTTCCACAAAATCATTTAA 4600 37 100.0 33 ..................................... GAATGGTTGGTTCAATTGAATCCATCACAGTAA 4670 37 100.0 34 ..................................... TGTAACTAATTCCTCAACTGGACAATAAGCTGTG 4741 37 100.0 33 ..................................... TAAAATAAGTTGTTTAATAGACATAATGTTTTC 4811 37 100.0 35 ..................................... GAATTAACCCCTTATTTATTATTTATATCTGTTAC 4883 37 100.0 33 ..................................... CTCAACACTTTAGCAAGATTTACAATTTCATTT 4953 37 100.0 33 ..................................... TTTCCAAATTTAACATTACGTGCCATAATGTAA 5023 37 100.0 34 ..................................... CAATTGCTTGTTGAATTGTATCAGTTAAGTTACT 5094 37 100.0 35 ..................................... CTTCAAGTTTACCCAGTTCCTCAAATCCTCCAATG 5166 37 100.0 32 ..................................... ATTCATAATCAATACCCTTAACAGTTCGCCAT 5235 37 100.0 35 ..................................... AGAAAATGTAGATGACAATGCGTCACCAAATTTAA 5307 37 100.0 35 ..................................... AAACTTTAAGCCGTTATATTTTGCAAGCTCACATT 5379 37 100.0 32 ..................................... TTTTTTACTTCCATTTCCACAAAATCATTTAA 5448 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 35 37 100.0 33 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Left flank : TAAATTCTAGGAAGAAAAAAATGGCACAATATTTAATTGGTTACGATATTTCCGATCCTAAACGACTACAACGGATTTATCGTCGAATGACAAATTATGCGACCCCCATTCAATATAGTGTATTTATTTTGGATGGCACAGAAAAACTACTTAAGCAATGTTTAGCAGAGATTATGTTAATTTTCCACAAAAAGGAAGATGATTTGCGCGTCTATCCCTTACCAGCCAATGCGGCTCAATGGCGACTAGGTAAATCAAGTTTACCTGATGGGATTTACTGGACGGCCTTGCCTACAGCCTTAACCTTATAAAATGCTACTGGAGTATTTCACAAACTTTGCTAAAATATACCGCACTTTTGGCTGAGTTTTGAAAAAAATAAGAATGATAAAAATTGTTCAATATTTAATCAAATCAATACCCAACTATTCAAACATCAGAAAAAGTTGGGAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTCTAACACCCCACTGCA # Right flank : CAGCTCTAATTTTGCGAGTTCTTCAAATCCCCCAAGTCGAAAGACATCGCCTGCCTAAAAGGGATGTACATCGCTAAAGTGCGGTTAGTTTTCAATATAAATTGGAAATCGACCGCACTTTTTATTTCCTTTCATTTTTACAAATTTGTATTTTCGCCTTTCTATTTATGACTTTTCTATAATTCACTCCGTCAGTAATTGATTTTTAGCTCAGAGGATTGAGCGCTAATTTAGTTTGTTAAAAATCTATAAAGAGAAAATAGAGAATTAAGCAATTATTGGCATATAAAACAATTGTTCTAACTTAAAAATGTGAGGGAATTAAAATGGCTGGAATTAATAAAGTAATTATTATTGGTAATTTAGGGAATGCACCAGAAATTCGAGCGATGCAAAATGGTGATACGGTTGCTAATTTTAGTGTGGCGACATCTGAAAGCTGGGTGGATAAAAATACACAGGAAAAACGTGAAAATACCGAATGGCATCGTATTGTGCTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //