Array 1 507-239 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASD01000002.1 Gilliamella apis strain NO3 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 506 28 100.0 32 ............................ GATTTGTGAGCCAACGGTTAGTTTTTCTATCG 446 28 100.0 32 ............................ ACATGTATCGTTTTAAACCGTTCTAGCGATAT 386 28 100.0 32 ............................ AGTCAGCAGAAACGGTGCGAGTTATTGATAAA 326 28 100.0 32 ............................ GTGATAGGGTTCTGGAATAAAAACAGTTATAG 266 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : TAGGTATTGAAGCTGAGGATAAGAAAAATAATGTTAGGGCGATAAAAGCAATTTTGTGGTGCGACTTTGGCAACGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGTAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAATAACCACAAAACAGCAAAACGTCCGAAACTCAAACAACCAAAAATTTTGAGGAGAGGGGTTTTTGAAAATTAAATTCCTACTTATTGCTAACCCTTTTTTTTGACTTAAAATAAAATTTTTAAAAATCAATACGTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACAACATTTATAGTATATTGGATTCTA # Right flank : ATACACCGCTTATTGAGTAGGTTAAAATGGTGATTTTTTAAGAGGGGGATAAAGGGGCTATTATTTCTAATAAACAGCAAATAATCGATGCGGTTTTCGAGCTATCAGTATTTTCTTTACAAAAGTTAACAATTAAACCATCAAAAAAAGTTGCATGGTTTTTTGCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTTATGCCATTAGGCTTAAAATTTTAAATAA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3147-2879 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASD01000002.1 Gilliamella apis strain NO3 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3146 28 100.0 32 ............................ GCCGCCTTGTTTTTTAGTGCGTTTTTTAATTG 3086 28 100.0 32 ............................ TTCACGGCGTTTGCTCGGTATTAATCAGCACG 3026 28 100.0 32 ............................ TGTCCCTGCGGTGAATTTAGGAGGTAATTATC 2966 28 100.0 32 ............................ ACATTGTTACATTTTTATTTATTTCTTTTTCT 2906 28 96.4 0 .....................A...... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : TCAGCTAGTTCCAATAATTAAAGTGTATTTTGGCAAATAAGTATGGTGTATTTAATTTAGCGACATTCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCTGTGTTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTATTCACCGCATAGAACTAGCCACCAAACAACAAAACGTCCGAAACTCAAACAACCAAAAATTTTGAGGAACGGGGTTTTTAAAACTTAAATTCCTACTTATTGTTAACCCTTTTTTTTAACTTAAAATAAAGTATTTAAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTACCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TATATAAGTGGCGGTATAGGTAATATCAAGTAGTACACCGCTTATTGAGTAGGTTAAAAATAGTGATTTTTTAAGAGGGGATAAAGGGGATATTATTTCTAAAAAACAGCAAATAATCGATGCTGTTTTCGAGCTATCAGTGTTCATCTTTACAAAAGTTAACAATTAAACCGTCAAAAAAAGTTGCATGGTTTTTTGCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTTATGCCATTAGGCTTAAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACACAACACACAACACACAACCTGCCCAACCTATAAATTCACCTTTCTAAAGTTAAGCTCACGCCGTTTATTATTTCACTACAGTTTATTATTTCAGCAATTCCCGAAATTTCAGCAAAATTTTTCAAAATTTCTTAGTTTAGTCTTTTTATCTCGGCCGATGGTTTTGGTATTAAC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 79865-79599 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASD01000010.1 Gilliamella apis strain NO3 NODE_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 79864 28 100.0 32 ............................ TAATGTCATATTTCTAAACCACCTATTCGGCG 79804 28 100.0 32 ............................ CCACCCCAACGCCTCGCAATTGGTGGTTGTTG 79744 28 100.0 32 ............................ CAGATGACATTTCTTTTAACGTCTTACCTGAT 79684 28 100.0 32 ............................ ATTATGTTTTGACGTTGAGCAACCGAAGGGCG 79624 26 85.7 0 ...................--.A.A... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.1 32 CTTCTAGGCTGCATAAGCCGTTTAGAAA # Left flank : CGAAAAACGTTTAACCGCACAAGGTAAATGGTCAGCCGAGGTAAAAAGCAAAATGGTTGAAAAATGGGGTAGCATTCATTTGAACTATCCACACCTTCATTTTGCTAGTAAAAGCACAGGGCAACATTTTATTATGTGGCTGAAACAACAAAAATGTGCAACGGCTGTTCAAGGTACATTTAATAGTTACGGACTCAGCAAAACTGCTACTGTTCCTGATTTTTAACTAAATAATAAGGGCATTATTATAATGCCCTTAACTGCCAATATCTAACCATATTAACAGCATAAATTTTGAGGAGCGTACTTTTTAAAGCTAAAAAATTTGAGGAAAGGGGGTTTTTGAAACTTAAATACCATGCAGTGTTAACCCTTTTTTTTAACTAAAAATAAACTGTTTAAAAATCAATTAATTGAAAAACTACCGAAAAAAAGGGTTTTTGCAAAGTAAAATAGATTTTGCCTTTTGCATAACGATGTTTATAGTATTTTGGGTTCTA # Right flank : TTTGAGGAACGGGGTTTTTTGAGCTTAAAATCCTTAATAACTGAAATGATCTGAATAGGTAAAAATATCTAAAACTAGGTAGGCAAGAATTATGAAATAAGGTTTTTGCGGATTGATGTTGTTGAGATTAAACTTTACAAAAGTTAACAATTTAGATTCTAAAATCAGTTGCATAGATTATTTTCAGTCACTATACTTTTAGCGGATTTTAAGTACAATAATCGGCTGTTATTTAGTCAAATTAACTTAAAAAAACCAAATAAAACATGGAATTACTTGACAAGGTTGTTGTTATGAACTATAATTTTAAACACCAAACACCAAACACCAAACCTGCCCAACTTATACTTTAAATTCATCTCGTTATTGCAATCAACGTTTAGTCTTTTCTAATAATTTATTTTTTCCTCGATTTTTAAGGTTATTTTTATTTTCGCCGCTTTTTAGCGTTTTCGCCGTTACTTTAGTTTTATTCTTTTCATCAAGTAGTTATGCACTAA # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTAGGCTGCATAAGCCGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 89591-89383 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASD01000010.1 Gilliamella apis strain NO3 NODE_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 89590 28 92.9 32 ...T...G.................... TGCGCAACTTCTTCTAATCCAAATCCTTGCTC 89530 28 100.0 32 ............................ GCAAATTAACCTTGCTGTATGTTTAGCCCATG 89470 28 100.0 32 ............................ CTAAGTCGGAATCATCGCAAACATTGATTATC 89410 28 75.0 0 .................C..CAA.ATC. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 92.0 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : TTATTTCTTAGTTCTTAGGTATTAAAGCTGAGGATAAGAAAAATAACGTTAGGGGGATAAAGAGCGCTTTTGTGGTGCGACATTCGCAATGTGCTGACAACTGAGAGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGAGCGTTAACAGCGAACGCAGGCAGAAGGTAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATTACCGTATAGAAACAACCACAAAACAACAAACGTCCGAAACTCAAACAACTAAAAAATAAAGAACTAAAAAATTTTGAGGAGAGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATGATTAAAAATCAATATATTAAAAAATCACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCCTTGTCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TTTGTATCATCTTTTGGATAATTATAGTTATTTTAAAAAAGATCGTTTTTTACACAAAGTAATGTTATTTTATCATCATTATAAATTGAATTTACTGTCTAAATATCATGGATTTGATTCATTCGTCTGATCTTAAAACCATTTTACATTCCAAGCGTGCAAATATCTATTATTTAGAGCATTGTCGAGTTTTAGTCAATGGTGGTCGAGTTGAATATGTGACCGATCAAGGGCAGCAGTCATTATATTGGAATATTCCAATAGCCAATACCAGCTGTATTTTACTTGGTACAGGTACTTCATTAACTCAAGCTGCGGTGCGTGAACTTTCTCGAGCAGGAGTTATGATTGGCTTTTGTGGGGGAGGGGGAACGCCTCTATTTTCCTCGACAGAATCGGAATTTGCCTGCCAATTCTTTTCACCGCAAAGTGAATATCGTGCAACCGAATATCTGCAAAGTTGGTGTCAATTCTGGTTTGACGATAATCTCCGCCTACAA # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3203-2816 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASD01000025.1 Gilliamella apis strain NO3 NODE_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3202 28 100.0 32 ............................ ACGCTGCCCGGGCGAGATTTTCGCTGCTATCG 3142 28 100.0 32 ............................ TACCAAAAAAATAATTCAAAAATAATTCAAAA 3082 28 100.0 32 ............................ TCGTTACGCCAATATTTGTTTTCAAATTGTTT 3022 28 100.0 32 ............................ TGCACTGTCCGCTAGCGCTGGTATAGCAATGC 2962 28 100.0 32 ............................ ATTGATTTGGTCACCGTAAGATAACTCGCCTA 2902 28 100.0 32 ............................ ATTCATTTATCCATCCGTTACCAAATTCTCTT 2842 27 92.9 0 .....................A-..... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.0 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : GAAAAATAACATTAGGGCGTTAAACAATCATTGCCCTGCTAAGGCAATGGCGTTGATGCTGACGAAGTTGGCGATAAAATCGATTTTGTGGTGCGACATTCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGAGCGTTAAAAGCGAACGAAGACGGAGGGCAGTCACGCAGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAAAAATAACCACAAAACAACAAACGTCCGAAACTCAAACAACTAAAAAATTTGAGGAGAGGGGTTTTTGAAAATTAAATTCCTACTTATTGCTAACCCTTTTTTTTGACTTAAAATAAAATTTTTAAAAATCAATATGTTGAAAAACCGCTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTACCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TATATAAGTGGTGGCATGGGTAACATCAAGAAGTACACTGCTTATTGAGTAGGTTAAAAATGGTGATTTTTTAAGAGGGGATAAAGGGTATATTATTTCTAATAAACAGCAAATAATCGATGCTCTTTTCGAGCTATTACTGTTCTTCTTTACAAATGTTAACAATTAAACAGTTAAAATAAGTTGCATCGAGTTTTTTCAATTACTATAATTTTCCACTATATTTATATAAATGGATAGATTTTATACTTTTTAGTATAAAATTGTAAATAAATCATTAATTTAATTGACAGGAATGTCGGATATGTGTTATAATTTACAACACCAAACACCAAACACCAAACCTGCCCAACCCATAATTTAACCTTTCTAAAGTTAAGCTCACACCGTTTATTATTTAATCACAGTTTATTTTTTCAACAAATTCAGCAAAATTTTTCAAAATTTCTTAATTTAGCCTTTTTATCTCGGCCGATGGTTTTGGTATTAACCTTGGTTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 33738-34011 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASD01000021.1 Gilliamella apis strain NO3 NODE_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 33738 29 100.0 33 ............................. GTTTTTAGTCGTGAATATTGGTCGGGAACACCT 33800 29 100.0 32 ............................. GGAAAGGGCGAGAATGAAGAAATCACTGAGCC 33861 29 100.0 32 ............................. CCTGCCATTTATGATTCCTTGCTATTTTCTAT 33922 29 100.0 32 ............................. TATATCTCAATCCAACACAAATTTTTGTTGTG 33983 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 100.0 35 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : TTTAATGATGATGGTGAACCAACCAGCACCGCCGGCCGCCCTATTCTATCGGCCATTGAAGGTCAAGATTGTGATCAGGTGGTAGTGGTGGTCACCCGCTACTTTGGTGGCATCAAATTAGGCACAGGCGGACTCATTCGGGCTTACGGTGGTTCGGCTAGTCACTGCTTACAACAAGCAGAATTAATCGAACTTATTGCTAGAACATCATTACAATTTCATTGCTATTACAATGAATGGCCAATTATTGAAAACCGCTTAAAAGAACTAGATGCAGTCATTGAACAACAAAATTTTGATGCTGAAGGTGTAACTGTCATTATTGCTATAACACAAGATAATGTAGTCATACTTAAAAAAAATATTAGCGATATTACTCGCGGTAGAGTGATTATCAAGACTTAAAACACCTGTGTAAATATCCATCCAAATACAGCAAAAAAATTGGTAGAAATTGTAGAATGCGTATTTTAATTATAAAACAAACGGTTATAATTAGA # Right flank : GTCTTAAAACCAGAAGATGAAGTAGATTTTATTCTGCCTGGTTATATGCCTATCGTGTGGTCACGTTTTTATGCCAGTGATCTGCACTATGAAAGTATGCTAGGTAAAGGTTGGATACTACCTTATGAGCAGCACCTTTACCAAGAAAACAACATCCTTTACCACGTTGATAATCAGGGAAGAACGCTACCTTTTGAAATTATCGAAGAAGGCCAAAAAATCTATCTTGCTGATGAACAAATTTTTTTGATTCGTACCGAAGGTGGTCATTATGCCATCCAGACCTTAAATGACCAATTCTATTATTTTGGAGAGGTGTTCGATAATGGTGAAAAAGCTTACCTACAACGCATAGAAGATAAGTTTGGTCACTATATCCACTTTAACTATGACAATGACCAACTGACCGATATAACAGCAACAGGTGGTATTAGGCTACACCTACATTACCGACATCCCAAAGGTAAAGTTACTGAAATAGTGCGTATTATTGATAACCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 38467-38679 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASD01000021.1 Gilliamella apis strain NO3 NODE_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38467 29 96.6 32 ............................A GAATCAATTTCAATTTCATCAATAAATAAATC 38528 29 100.0 32 ............................. AAGGTATCGATTTAATCGACCAGATTTTACCG 38589 29 100.0 32 ............................. GAACTTTTCGCGTCAAATTTTGTTCTATCTCC C [38597] 38651 29 82.8 0 .....................C..TTGA. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.9 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : ATTAATGAAATAGTACATGTTAGACGTTGATCGGCTTGAGAAACATATATCTGACGCATTAGGAATCCCATTACATGAACTTTGGCCTTCTCGTTATGTTCGGGGAAAAAGGTAAGGAGTAAGTTTAAGGCTGCATTAAGCGCTATTTTGTTTTTTTATTTTTTGAACTGGTAATAAATTGATAGCGGCTTTTTTGCCAATCAATCCACTGGCTTAAAGCATCAAGTTGCATGATGTTTATTTGTTTTAAAAAATTTTTACGCCAATAAATTAAAGTCCGTTTTGAAACACCTAATTGTCGATCAATTCCAGCATGACTTATCCCTTCACTTATAAGGTCTATGTAGGGAAGCCATAAGTCTATAAAGTGCATTTTATGAAATGGGGTATTTGTTAATGGATTAAACGACTTATTACAATGCGTACATATAAATTGGGGACGATCAGGATTGATGATAGGGCTAATCAATCTTGGGCATTTTTTATGACAATGCGGGCAT # Right flank : GTTCCCTGTGTGTACAGGAATTAACTTCAAATTCAAACAAACCACCTTCTGGCGGTTTTTTATTGCCCAGAATTCCTAAATAACTTACTATTGCCAAAAAAGGAGATGGCATGAAAAGAATTACTTTATTTGGGATAGCTTGTTTTGCTTTGTATGGTTGCGGTAACGATAGTGATGGGCAAAAGGTCACTGAGGAGATGTTACTTGGTGAGTGGAACTGCAAAGTTAGCTCGCAAGAAGCAGAATCAAGGAATGGTAAGTTACAAGATTTTGGTGATCCAGAGTTCGAGGAAAATAAATACATTTTTACCAAAAAAGATGGAAAGCTTTTTGTAAGTTTATCTTTATATAAAGAAGATTTAATGCCTTTTAATCTAGAGGATATTTACAAAAGACCTGAGTATACGGAATATGATAGACAAAGAACTCAAAAGATTAAATACCTATCAAAAGATAGTTTTAGTCTAAACGGTACATATACAATCATCGATAAAAACAAC # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.38%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17549-17151 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASD01000026.1 Gilliamella apis strain NO3 NODE_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================== ================== 17548 28 100.0 32 ............................ ACAAAACCATTTCTACTCACTAGTTAGCGGTG 17488 28 100.0 32 ............................ ATTCCGTTAGGTGCTTGTGTAGAATGACCGAA 17428 28 100.0 32 ............................ TGCGGATATTGTTATAAAACATTCCGATGATA 17368 28 100.0 32 ............................ ATACACCTCTTGCCACTCTTGTAATTGTGCGG 17308 28 100.0 32 ............................ TAAAAATGGAAATATTGTTTCTAAATATAAAT 17248 28 100.0 42 ............................ TGATAAGAAATGATAAGAAGAAAACTAAGAAAACCAAGAAAA 17178 28 78.6 0 .................CTTT....TT. | ========== ====== ====== ====== ============================ ========================================== ================== 7 28 96.9 34 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : TCAGCTATTACTGATAATAAACGTTTATTTTTATAAATTAGTTTAGTGCTTCTTATTTAGCGACATTCGCAATGTGCTGACAACTGCGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTAGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTATTCACCGTATAGAAACAACCGCAAAACAACAAACGTCCGAAACTCAAACAACCAAAAAAAAATTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACATAAAATAAAATAATTAAAAATCAATATATTAAAAAATCACTTAAAAAAAGGGTTTTTATTGGTAAAAATAGACTTTGTCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : GTAATTAAAATGGATTTTTAGTATTTAAAACTCGCTGTTCTCAAATTTATCTATGAAATAATTAAAACGCTTATATAAGCGTTTTAACTCTGATTAATATCATTATATCTACTATAAACTATTAGAACATTAATAGTTGTACAATTAAATTGCAGTCATATAGACCTGATTATTCAGTAAGTTTTTAGGATCAAACTGTTGTTTAATTGCACGCATTAATTGGCGATTTGCTTCAGGAATGGCAGCATTGTAATAACTTACTTTCGCCGTTCCGATGCCATGTTCTGCTGAAGGCAATCCTCCAAATTCAAGACATTTTTGATAAAGCGCTTGGTGAACATTTTGCAGATCAGATTGCCATTGTTTGTCATCACGATTATCACGCAAAATGCATAGATGAATGTTACCATCACCAGCATGACCAAAGGCTAACATGCGCATTTGAGTTTGTGCTTCTAGCTGTTTGGTGAAATTGATAAAATCGCTAATGCGATTTATTG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 13402-12212 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASD01000033.1 Gilliamella apis strain NO3 NODE_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13401 29 100.0 32 ............................. GTAATGTCACATTTAGTACATTCGATGGTTCT 13340 29 100.0 32 ............................. TTGCTAGGTTGGACTCCACAACATGCAAACGA 13279 29 100.0 32 ............................. CATAAATTTGCACGTGTTGATATGGACTATAC 13218 29 100.0 32 ............................. GATGCAACAATGCAACAGCAAGATTTTTATAT 13157 29 100.0 32 ............................. TATAAAATGCACATTATACAAACAACATCAGA 13096 29 100.0 32 ............................. CAATTAGTTTATAAAAATTCTCTAAAAAACAT 13035 29 100.0 32 ............................. TGCCATAAAAATGCTCCAATAAATTGATATAG 12974 29 100.0 32 ............................. ATCGGTTTCGTTACCACCGTTTTTATACCGTT 12913 29 100.0 32 ............................. CTAGGCAACACGCAACCTAAGGACAGGTTACC 12852 29 100.0 32 ............................. GCAATTCAGAGAACTATACAAAGAAAAACGCA 12791 29 100.0 33 ............................. CGCATTAATGGTAAAGATAAACTTGTTTTAGTC 12729 29 100.0 32 ............................. GGTTTAGTATGAGTAACGATATGGAAAATAAT 12668 29 100.0 32 ............................. TGGTTGGGTGGAGTTACAAAAGCAAGAAAAGA 12607 29 100.0 32 ............................. ATGTGATTGATCTCGACATGTCAGAAGATGGC 12546 29 100.0 32 ............................. CGAATTAATAACTACCTCAGTCGTGTAGTGGT 12485 29 100.0 32 ............................. CCGTCTTTGATTTGAAATGTTTTAGCCCAGCC 12424 29 100.0 32 ............................. GCTTATACAGTTTATATAAAAGGCCCTACTAA 12363 29 100.0 32 ............................. ATGTGCCATAGCGCCGCGAATATCAAAGGCTA 12302 29 100.0 33 ............................. TCTTCTTTATAATTTGCCGATAGACTGTCTAAC 12240 29 93.1 0 ..........................A.T | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.7 32 GAGTTCCCTGTAGGTACAGGGATATACCG # Left flank : CTTATCGAAGAAGTTTTATCTGCTGGTGGAATTGAACCGCCCCCAGCTCCAGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTCTTGCTGACAGTGGCTTTAGGAGTCGCTAAAAATGAGTATGTGTGTTGTAGTAACTGAAAATGTCCCTCCAAGGTTACGAGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGGGTTTACATCGGTGATATATCAAGACCAATAAGAGAAATGCTATGGCAACAAATCACTAAACTTGCTGAGGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACTGAGTCAGGATTTGACTTTCAAACTTATGGTGCAAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGGTTGGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAATGTTCTTTAAAAATTAGAAAAATTTGGTAGATTTTAACTAACTAAAAAATATTATATAAAACAAATATCTATATTTAGA # Right flank : TTATTAGCTAATAAAATTACATCCAAATGGTTTTAAATTATCTACCTTTATGTGAGTAGATGGTATACACTCCTCAATATTTTTTACAAGGCTCTAATGATAGCTATTTATAAAAATAAAAGTTAATAATCATATGCATAGATAATATGAAATAGAGGTTTTTTAGTTAAACTAAAATAATTATTAAAAATAGCGTACAATACTCAATATTAATCGTAAATTCATTATCAATCATTTAGGAATTTTGTATGACAGGTAAATTTATTGTCATCGAAGGTTTAGAAGGTGCAGGCAAAACAACAGCCATCAATACTGTTGCACGTATTTTAAAACAACATCATATTTCTGATTTACAATTTACTCGCGAACCTGGCGGTACTCCAATTGCAGAAGCATTACGAAATATTATTAAAAATGGTTTAGATAATGAGCCGCTAACTGATAAAGCGGAATTGCTAATGCTTTATGCTGCTCGTATTCAATTGGTTGATAATGTAATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTAGGTACAGGGATATACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [76.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2572-3021 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASD01000035.1 Gilliamella apis strain NO3 NODE_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2572 28 100.0 32 ............................ ATTGATGCTGACAAAATCAGGTGATGTAACCA 2632 28 100.0 32 ............................ ATTCGGGGGCGCCGGTAGTGTATTGTTGTTAA 2692 28 100.0 33 ............................ CTGCTAATGGTACCGATTTTATTAAAAATAAAA 2753 28 100.0 33 ............................ CTCCTCAAAACCTGTTGTAACATACTGTATTTT 2814 28 100.0 32 ............................ AACAATCAAAAAGCCTGTTACTAGCAGGTTTT 2874 28 100.0 32 ............................ GATGGAATAATTCCATCGGAGGGGGATTTGAA 2934 28 100.0 32 ............................ TACCCCGCCTAGAGCTTTACCAATCGCTTTAC 2994 28 92.9 0 ....................TA...... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.1 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : CAGCTAGTTCCAATAATAAAAGTTTATTTTGGCAAATAAGTTTGGTGTATTTAATTTAGCGACATTCGCAACGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCGCAAAACAACAAAACGTCCGAAACTCAAACAACCAAAAAAAATTGAGGAACGGGGTTTTTGAACCTTAAATTCCTACTTATTGCTAACCCTTTTTTTTTGACTTTAAATAAAATAATTAAAAATCAATATGTTGAAAAATAGCTTAAAAAAAGGGTTTTTAATAGTAAAATTACGCTTTTTCTTTTTGCCAACTGCATTTATAGTATATCCGGCTCTA # Right flank : ATATAGTAAGTGGCGGTATAGGTAACATCAAGAAGTACACTGCTTATATAGCGGTTTAAAATTGATTGCCTAGTGATAAATAAACTGACAACAAATTAAATTTATCTATTTAAAAAATCCTTAAAGCAAATTACTCCCTCAAAAATTGAGAAGAGGAGAGAATTGCTTTTAATCCTATATTGCTTAGTCTTTCTGGTTAAAAATTGAATCTATATCAAATTAGGCTATAATGCCGCATCGTTTAATTTTTATTATTAAAAATGAATATTGGTTTTATTGGCGCCGGTAAAGTGGGTTGTAGTTTGGCTAAATATTTCAGCCAATGTGGTTTGCCAGTCGTTGGTTTTTATAGCCGTGATGCACATCAAGCACAAGCAGCAAGTGATTTTACGAATAGCAAAGCATATTTAACTTTATCTAACTTAGTAGAGGATTGTGATTGTCTATTTTTGACTGTGCCGGATAGTCAAATTAGCTCAGTTTGGCAAGTGGTTAGTCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32118-31791 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASD01000003.1 Gilliamella apis strain NO3 NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32117 28 100.0 32 ............................ ATCATTGCGAAGAGCGAATGCCAACATCCATG 32057 28 100.0 32 ............................ TATTAATATTTTTTATTACATCATAGTTTTCC 31997 28 100.0 32 ............................ TTGATTTACACAAACCTGTCACGTTCGCAATT 31937 28 100.0 32 ............................ TAACGGTTCACGTGTTTACGTGCAAAAATCAA 31877 28 89.3 32 .......G...CA............... AATTTTATTTGAAGATACGCCGAGCAGTTCGC 31817 27 85.7 0 ....................CCA.-... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 95.8 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : CTAAATTCTATTTGCAGTTCAAAGTACCGCGTTACCAAGATTTGCCAGCTAGCAAGTTTGACGAGGCTATTAAGTGGTTGGGTGGTGTAAGCATGAGAAACGGGTTGTCTGATGAAGATTGGTACGATTTAGCTTGGCTTTATAAAGTAGCAGATAGGATGCGTTCTCAAATTGAGCTTATCGAGCCAGCCCTTAGGGCAATTGATTCTAGTTTTGTCAGTGCATTTCACTCTATGTCAATCGAGTACAAACGAAATTTACATAGTGCAAAATTAATTATTGAGCGAGAAACAGCGCATATTAAAGCAAAAAATATAATAGACAAATGGAATAGGGTTTTACCTGTAATTAGACATCATTAATTAGTTAACCCTTTTTTTGCTGATTCTTATAATTCATTTAAAATCAAATGATTATAAACAGGTGTAAAAAAAGGGTTTTTAGCTACAAATTGGTTATTATTCTTTTTCTGAACAAAGTTTATTGTGTATAATGTTCTA # Right flank : TTCAAAATTAAAACTATCACAAACCGCCTTCTGGCGGTTTTTTATTGCTCATTATTCCGCAAATCAATAACAGATTTAACGCTCACATGAATAGCTCGACGGAGCAAAAGCATGAAGCTGCCTACCTTCAGTGGATTGTTTTCATGTGAGCTTTTATTAAAAAGGTAAAAGGAGTGATTAATGAATAATTTAAAAAAATTATAAGTCCCATTTTGCAATACAACAATCCAAGCCATTGAGCATAATGGACAGCTTTATGTTTCAATGCGCCCCATTTGTAAGAATATTGGTTTGTAGTGGGGATCTCAGTATAACCGTATCATGCGTGACGAAGTAATGAAAACCTGCGTCTTCATTATGAAGACTGAGATTCTATAACCCTCTAATTTCTTCTTGGTTTATTAATAATATGAAAAAATCCATCACCTTTAAGAGATCATTTAATGATCAACTTATCGAAATATTATGCTATTATTCTGACGATAAAAATAAACAGGATA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 78182-77855 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASD01000003.1 Gilliamella apis strain NO3 NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 78181 28 100.0 32 ............................ GATAGCATTTAGAAAATCGCCGTCATCTTTAT 78121 28 100.0 32 ............................ TATCATTTGCGATTCTATTTGTGCCAGCAATC 78061 28 100.0 32 ............................ AACATATAAAGGTTGGGAAAATGCCATTAATT 78001 28 100.0 32 ............................ ACTTGAGCGCATCGGCGCACAATTTAATAACA 77941 28 100.0 32 ............................ ATTTCACTAATTGAATTAATGGCTGTTTTAAA 77881 27 85.7 0 ...C...A............A..-.... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 32 GTTTACTGCCGTGTAGGTAGTTTAGAAA # Left flank : TAAGAGTTTATTTTGGCAAATAAGTTTGGTGTATTTAATTTAGCGACATTCGCAATGTGCTGACAACTGAGAGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCTGTGTTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGACCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGGCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAATAACCACAAAACCGAAAACGTCCGAAACTCAAACAATCCAAAAAATAAAGAACCAAAAAAATTTGAGGAACGGGGTTTTTGAAACTTATAATACCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAAATCAACACCTTGAAAAATGGCTCAAAAAAAAGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACAACATTTATAGTATATCGGGTTCTA # Right flank : TATTAATTATTTCTAAAAAGATTAGGAAAAATTTTTCAAAAAGCTAAAAATCCAAATTAGTTATAGCTTTGTTAAATAAAAAAAAACCCAGTAATTGGTTGTCCAACTATTGGGGGTCACTTCAAGGAACGGTTTTTTATTATTGGTTAGATAATTTTACAATTATCCTTGGTATTTTTTCATGACAATTGATGCATTAGTACCGCCGAAACCAAAGCTATTAGACATTACTGTGGTTAATTCACGTTCGGTTGGCTCGGTAATAATATTCATGCCTACTGCTTCATCTGCAAGTTCGTCAATATTGATACTTGGTGTAATAAAGCCGTGTTCAAGCATAAGTAGTGAATAAATCAATTCTTGTGCACCGGTGGCACTTAATGAGTGACCAGTCATGGATTTAGTTGAAGAGATAGCCGGGATATTATCACCAAATACTTGTTTGATTGCCCATAACTCTTTGACATCACCAACTGGCGTTGAGGTACCATGAGTATTGA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 157367-157160 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASD01000003.1 Gilliamella apis strain NO3 NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 157366 28 100.0 32 ............................ ATTCTCCTAGGCCTAAAAAGAAAAAGGCTAAC 157306 28 100.0 32 ............................ GTTTAGAAAGCATTATGATTGAATATTTCATA 157246 28 100.0 32 ............................ AAACGAAATAACGGCTAGACATTGCTCATTAA 157186 27 96.4 0 ...................-........ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTTCACTGCCGTATAGGTAGTTTAGAAA # Left flank : CTTATTTAGCGACATTGGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGAGCGTTAAAAGCGAACGAAGGCGGAAGGTAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCACAAAACAACAAAACGTCCGAAACTAAAACAACCAAAAAATTTTGAGGAAAGGGGTTTTTAAAGCCTAAATCCCGCCAATAAATCGTTAACGTTAGTTATAAAATCAACTAGTAACCAAAAAATTTGAGGAGAGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATGATTGAAAATCAATATATTAAAAAATTACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGTCTTTTTAACAACTGCATTTATAGTATATTGGATTCTA # Right flank : TAATATTGTATAAATTAAAAATCCAGTAGCTCAGGGTTAATACCTAGTGCGCTAGCTATTTTAATACGTGTTGCTTTCCTTAATTTTTGACTTTTTTCATATTGAGAATATGCAGATTGACTGATACCGATTTTATTGGCAACTTCAACTTGAGATAATTTTAGATATTCTCGCCATGCTTGAACTGGTGAATAATTATTATCAAAAACCAGATTAACAACTTCGTTGGGCACACCAGTATCAGTATTAATTTGTTTAGTATTCGCTAATTCTAAATATTGTGTATAAGGCATAACCACAAACTGTGGTTGCCCTTGTTCATTATTAATAAACTGTATGTTATTAGTAAGTGCGTTCATCTCGTTTTTTCACCTCTTCGATAGAAACAATATGAATAATGCCATCAAAATTAAAAAACACTCGATAATTTCCAACTCTTAATCTGTACTGATATTTGTAGTTAGTCAGAGATTTTACATTAATGCAATTAGGCATGTTTG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 48359-47903 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASD01000017.1 Gilliamella apis strain NO3 NODE_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48358 29 100.0 32 ............................. CTTCTTTTTCTAATTTTAATCCATCAATTCAA 48297 29 100.0 32 ............................. GGTGAATTCGTTTTTACAAAAGAAGCAACCAA 48236 29 100.0 32 ............................. CCATTTGATTGGGTGCTAGGTATTAGCTGGAA 48175 29 100.0 32 ............................. CGCATACAAGATGCCCCGTTTTGTCTAATTCG 48114 29 100.0 32 ............................. GAAAACGGTAAACGTTTCTAATAATACTATGA 48053 29 100.0 32 ............................. TTAGCCGAGGGGTATAACCATTTGGCTAAAAA 47992 29 100.0 32 ............................. CCGGTTATCGAACTGCACGAAAATATATGGGG 47931 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : GGACAAAGTTCACAAGCTAAAAGTATTATATTGAATTTTAATAAATGCTATAGCCGTGAACAGTTCAATGGTGAATGGGATAAGGAAATTGAAGTTTCAACCCGTTTATCAAAAGATAATATTGATCTTTATTTAGCATATCAACAAGATGGAAAAGTTATTCCTTACTGTAGTAGTAACGAATACGCATGGGAACAAAGCCATGTTACAATTAGTGCATCTAAATGGGCTAGAGTTAAAAAAGCCGTCCCACAACTTGACGAACAGCCTCTAGAAAAATTGAGACAACAAATACATAGACCAAATGCCATTATTGTGTTAATTGAGCCAGAAAAAGAGCCTTCTTTTTATTCTAAGGAATTAGGCTTTTATCTAAATTAATTTAAAGTTAAATATTAATAATTTTAACTTGCAATAAGTTGAGTGAATTTCATACAGAAAAAATCGGTAAAAAATTACTCCCTTATATTTCAATTATAAAACAAATGGTTATAATTAGG # Right flank : TATTACTGGCTAATTCGTTAAAACTGCCTGGCTAGATTTGGGTGAGGATGGAATACTTTGATCATCTGCAAAAATCAGTAGTTCGCCGTCGCTATATCTAACGTTTTATGATTGATGGTGAGGTTAAGCCAATGTTAGCTGTATTAGAGTATTTAAATGAACATAAAATAAAACCCAACCGCCGACACGTTGGGTAGGCTGCGCGTGGGATTGGAGGTCCTGTCGGAGACTGCCCGCGAATACCTTTTAAATAGTATAGGTAAAAAAATGACTGGCGTAAATATTGAATTCAATGTACAAGACGCACTAATCAACATAGAATTTGCTTTGCTCGATACACATGGTTTATTTAATCATATAAGTAAAACATTACTTGATATTCATGAAGCACGCTTTAATACACAGGAATCACCTGATGGTATACACCATGGCAAGCATTATCACCATGGTATCAAGAAAGTAAGCCAAAACAAAAAGATAAAGCTTAAGGCTCGATGGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 57146-56698 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASD01000016.1 Gilliamella apis strain NO3 NODE_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 57145 28 100.0 32 ............................ CTGTTCGGCGGTAATTTCGAAATAATTAAATA 57085 28 100.0 32 ............................ CATAGCCAGCATGTGCTTGGTAATGCATCGGA 57025 28 100.0 32 ............................ TGTGGTAGCGGTCGGCAGCGGTGAAAACTATA 56965 28 100.0 32 ............................ TCAATTGATGAATTGAGGCTTGCTGCCAAAAA 56905 28 100.0 32 ............................ GTTATGACTACCACCGACAAAAACCACTCGTT 56845 28 100.0 32 ............................ TGCCGAGCATAAATGCTTAAATAACCGAAAAG 56785 28 92.9 32 ............G.......T....... TCGAGTTACAACTCCTCAAATTGCAGAACACG 56725 28 67.9 0 .......G....G....CG.T..TTTT. | ========== ====== ====== ====== ============================ ================================ ================== 8 28 95.1 32 GTTCACTACCGTATAGGTAGCTTAGAAA # Left flank : CCCATCCAATAAATCGTTAACGTTAGTTATAACATCAGCTAATTCCAATAATAAAAGTTTATTTTTATCAATCAGTTTGATGCTTCTTATTTAGCGACATTGGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGAGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCGCCGTATAAAAACAACCACAAAACAACAAAACGTCCGAAACTCAAACAACCAAAAAAATTGAGGAAAGGGGTTTTTGAAATCTAAAACATCCTACTACTAACCCTTTTTTTTAACTTAAAATAAAATAATTAAAAATCAATATATTAAAAAATCACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTTTCTTTTTGCCAACTGCATTTATAGTATATGGGATTCTA # Right flank : TGCCTGTCATTCGACCACTCAGCAGATGAAGTAACCAAACTTTTACAAAGAGCTAAAATTATCATTGATGTACAAAAAAGCAACGATAAGCTACGTAAAAATTGTAGGTAAGGATTATTTTAAAGATGATTATGAGAATGGAAATTTGTTTCAATATTGAGTGACCTTGTTTGTTGATTATGAAGCTAAAAATGATTTTGGTGTTGATTTAAAAAACACTTCAATATGTTATTTTTATTCTATTTTAATAAGGAATGATTATTTTATGTTCCCAGATTTTGATAAAATGGCGATCTCAAATAAAATATATAGTTATATTGATTTAATGGCATCAATAGAACATTTTCATTCTTCTTTATTTGATATTGGAAAAATAAGTATTGTCGATAAAATATCGTACCAGATTGATAAAAATAATTTCCTCTATTATGAGAATGATTGAATTAATAACTTTTATTGCACTTGGCTAACAAATTTTATACTATCTATCAAAATTATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //