Array 1 5050388-5051387 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP070169.1 Klebsiella pneumoniae strain FDAARGOS_1320 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
   5050388	    29	 100.0	    30	.............................	CTCACGCTGATACCTCGGAAAAAGACGGGC  	
   5050447	    29	  96.6	    32	.G...........................	GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG	
   5050508	    29	 100.0	    32	.............................	TAATATTGATAAATTCGATGAAGTAACCGGAA	
   5050569	    29	  96.6	    32	............................A	TCGAAGTACCAGCGCCGCACCCTGTTTTTTGC	
   5050630	    29	 100.0	    32	.............................	GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT	
   5050691	    29	 100.0	    32	.............................	AAGGTTGACCTGTTGTCGGCAACCATCGAGCC	
   5050752	    29	  96.6	    32	.........A...................	GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA	
   5050813	    29	  96.6	    32	.....A.......................	GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA	
   5050874	    29	 100.0	    32	.............................	GAATATAAAACCAGATTCCATATAGCCCTGTG	
   5050935	    29	 100.0	    32	.............................	CCGGTTACGGGGATGACTGCAATTCGCTCCTG	
   5050996	    29	 100.0	    32	.............................	GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA	
   5051057	    29	 100.0	    32	.............................	GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC	
   5051118	    29	 100.0	    32	.............................	TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA	
   5051179	    29	 100.0	    32	.............................	GTGATCGTCATGGATATCACTGCCGTTCCGTC	
   5051240	    29	 100.0	    32	.............................	CAGACAGACAGCAGGCAGCAAACAGGGAAGAC	
   5051301	    29	  96.6	    29	............T................	GGGTTCACTTGGGTGAAACTGAACTAACT   	
   5051359	    29	  75.9	     0	...........ATTC...A......G..C	|                               	
==========	======	======	======	=============================	================================	==================
        17	    29	  97.6	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA
# Right flank :  CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT

# Questionable array : NO	 Score: 6.14
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [2-8] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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