Array 1 22060-26054 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABYQT010000012.1 Halomonas aquamarina strain MB598 NODE_12_length_86115_cov_14.249267, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22060 28 100.0 32 ............................ TTGATCTGCGTTTCGTCACGTCCGCCTATCAA 22120 28 100.0 32 ............................ CAGCACGGAACGTACCGCACTTAGCTAATTTT 22180 28 100.0 32 ............................ AGGCAGCAACAGACGAATTCATCACCCAGTAC 22240 28 100.0 32 ............................ GTAGCGCTGGGCAGCGAGGCCGAGCCCGATGG 22300 28 100.0 32 ............................ TGCTCAGCCAGGAGGTGGTCGCGGTCGGCTGA 22360 28 100.0 32 ............................ TATTGACGATTAAACAGTGGCTGGCGGTTTAT 22420 28 100.0 32 ............................ TCAATAGCCCGTTCGAGCGCATCGTGCCCGAT 22480 28 100.0 32 ............................ TCAACTGTTCGCTTCTGCCTTCCGTCTGAAGT 22540 28 100.0 32 ............................ TGCGAGCCACAGCGGAAGCGGCAGACGCCTCG 22600 28 100.0 32 ............................ CAAAGCCCTGGTTGTAGACCGTGCTTGCTGCC 22660 28 100.0 32 ............................ TGACGTTTACACGTTCGATTAATCCAAACACG 22720 28 100.0 32 ............................ AAACGCAGCGCGACTTTGAGCGCAACGGCCCA 22780 28 100.0 32 ............................ AAGAGGGATGCCGTAGTAATCCGCCACCCACC 22840 28 100.0 32 ............................ GCTTCGAACTCGACGATGTTGCCGGGCACGGT 22900 28 100.0 32 ............................ ATGCCGAAATCGGGATCTTGCTCGCTCGCCTC 22960 28 100.0 32 ............................ TGCACAGGGCCAGCAGGCCAATACGGGCTTTG 23020 28 100.0 32 ............................ TATATACCGGCGCACAGAGAATGCGCCTACCA 23080 28 100.0 33 ............................ CTATAAATAAATAGCTTTTCAACAAATCAATAA 23141 28 100.0 32 ............................ GTCAGCGGCAAAGGGATTACCAACCTATTTGA 23201 28 100.0 32 ............................ GCCTTCAACACTGTCTAGGGGTGGGCCTGAGA 23261 28 100.0 32 ............................ TTCTGATAAGGCAACCGCTGTGGCTATTGCCG 23321 28 100.0 32 ............................ TGTCCTGGTGGCATAGGTACTTATATTTCCAG 23381 28 100.0 32 ............................ AAGTGGATTGCGACACAGAGTGATGCTAACCC 23441 28 100.0 32 ............................ TCGCAGAACGCCTCCTACCCGGGGGCATTTTG 23501 28 100.0 32 ............................ AAACGCCCATTGCTAGAGAAGAGCGTGCGCAA 23561 28 100.0 32 ............................ GTAATGCCCTCGTCACTAAGCGTTAACGTTAC 23621 28 100.0 32 ............................ AGGTAGCAACGCGGGCCGAGCTAACGCTGGTG 23681 28 100.0 32 ............................ TTAAAAGGCCATGCGGAGCCATATTCCTCCTG 23741 28 100.0 32 ............................ TTGCACACGCCGCCGTCGCAGTGGCGCGTTTT 23801 28 100.0 32 ............................ TCGCTGGATGTTGCGTAGCTCGATCACCTCGG 23861 28 100.0 32 ............................ ACGTCGTCCAGCACCTCAAGCAACTGGCCGCT 23921 28 100.0 32 ............................ TCGCTAAAGAAATTTGGCGATTCGCTTAAAGT 23981 28 100.0 32 ............................ GCAAACATACCTGCGATAACGCCAGCGATGGG 24041 28 100.0 32 ............................ TGATCAACTCCGGCTTTCGCACGGTGACGAAT 24101 28 100.0 32 ............................ AGGGGCCCGAACCCGGTATGGGCGCGCACCCA 24161 28 100.0 32 ............................ GATAGGTTCGTCGACTGGGAGCGCGTCGGTAC 24221 28 100.0 32 ............................ AACCAGTACATGCTGCAGCACTCGCCGGACTG 24281 28 100.0 32 ............................ GGGTTCGGCCCCCTGGTGATCAACGGGCAAAC 24341 28 100.0 32 ............................ ATCAGCGTGTGCGCCAAGCCCTTTACCGTCAG 24401 28 100.0 32 ............................ AGCTCACCGAAGTTACGGCCCGCCAGTGTTTC 24461 28 100.0 32 ............................ AATTGCAAGATAGCTGTAGCTAGCCGGTAAGC 24521 28 100.0 32 ............................ GTTGCTACATCGTTGCTACGTCTGCGCCCGAC 24581 28 100.0 32 ............................ CTCAAGCGCGGCGTCGGCGATACCCACCGCTA 24641 28 100.0 32 ............................ CACCCGGTCCTTGGGCAACGTCAGTGCCTGCG 24701 28 100.0 32 ............................ AACTCAACGAGGTTACAGACGAGCTTGTACGC 24761 28 100.0 32 ............................ GGAATACTTAACGGTTATCGTGTCTTCGCTAA 24821 28 100.0 33 ............................ AGACTGGCAGGGAGAAGGCGAGCCCCCTTTAAT 24882 28 100.0 32 ............................ ATGCCTGCAAAGACGCTGTAGAACTCGTCCCA 24942 28 100.0 32 ............................ AGGTCAAAATGCAATTGGGCTGCCTGGTTAAT 25002 28 100.0 32 ............................ TGGATGACCCGCAAGCCGTCAATTTTCATTAA 25062 28 100.0 32 ............................ ATTGCGATGGCACAGCCTGCTGCACCTGGGAA 25122 28 100.0 32 ............................ TGTCAGCGGGCGACCGGCGTGCGTGTTGGAGT 25182 28 100.0 33 ............................ AGACACTGTGCGGGCATGGGTCGGTGCCATTTC 25243 28 100.0 32 ............................ GCCTGGATGTTGAGCTCGACGCCTTCGCGCGT 25303 28 100.0 32 ............................ TTCCCTTGATCCAAAGTTAGAGCGCGGTTGAA 25363 28 100.0 32 ............................ CGCTGCTCGGCGACCCGCTTCGCAGCATTGAA 25423 28 100.0 33 ............................ ATCTTCATTTCCCCATTACCTCGCCTGTATCCA 25484 28 100.0 32 ............................ TACTGCGCCTGGAGGAGTCGCTGTCCGCTGCA 25544 28 100.0 33 ............................ TACCTGACGCGTTCCCAGGCGTGCAGGGTGAGT 25605 28 100.0 32 ............................ ACCACCCGACAGGGTCCACTCGATCAGATCGC 25665 28 100.0 33 ............................ ACCGCGGGCAGCTGTATAGCGGGCGTTGCTATT 25726 28 100.0 32 ............................ AGCGAGCCCACGCCGATGTAGGTCTGGCCATC 25786 28 100.0 32 ............................ AAGTGGCCGAGATACTCGTTTGCTTCCCCTGC 25846 28 96.4 32 .........T.................. ATCTTGCGGATGGTGGCACGGTCAATGGAGGG 25906 28 100.0 32 ............................ CACTGGCCGCCGGTGCTGTGATAGCGCATCAG 25966 28 96.4 32 ....................A....... TGACGCTCAGCTTCAGCGCGCACAAACTCCCG 26026 28 82.1 0 ..................CC..T..TC. | T [26044] ========== ====== ====== ====== ============================ ================================= ================== 67 28 99.6 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : TGAGCCTCGAGCAGTTGATGGCCGCCAGCTGGCTAACCGGCATGCGTGATCACACAAATGTGAGCGAGGTTCAACCAGTGCCCGCGGATGCGAAGCACCGCAACGTAGCGCGCAGGCAGTTCAACACCGGCAGCCCCAGCCGCGCCAAGCGCTATGCCAAGCGGCACGACATCTCGGAAAGCGAGGCGCGCGAGATTTACGCCAACGTGGCGGAAAAGCGCATCGAGCTACCGTTCGTGCAAATCAATAGCCGCTCGACCCAGCAGCGCTTCGCTCTGTTCATCGAGCACGGAAAGCCGCAGGCAACGCCGGTCGCCGGGGCGTTCAACCATTACGGTTTAAGCCCCACCGCCACCGTGCCCTGGTTTTGACCCTTTTTTTGAACATGAAAAAGGGTAGCCATTAATCAACCACTTAGCGGTATCACTTTCGAAAGGGGGGCTACCGCTTTTTTGGCTAAAGCTCTTTAACAATCAGCACATTATTTTTGATAAGCTCTA # Right flank : AGATGCAGTGTCTGTGCATGGGGCACCGCTGTGCGGTGCTTCGCGGGTGCGCTGGCGCTTACGCCGCGCTACGGTATGTGCCGTTATCTTAAACCAGTGTAGATACCAAAGGGCTCTATTTCACCAAACACAAAGAGCCCTTACGGGCTCTTTGTTTAAAACAGGGTAACGGGCTTGGCTCAGTCGTAATCTTCCCGCTTCTCGAACGCGCGCTTGTCGTCGGGCAGGCGGACGATGTCGCCGAGGTGGAGGTTGTCCATGCCTTTTAAGCGGTTGCCCTTGGTGTCCAGGATGGCGACGACCTTGGCGATGCTGACGGCGTCTTCTTCGCGGTAGGCTTCCACTTCCACGCGGACGATCTTGCCCTGGTAGCGGGCGGAAAGAATGTCGCCGTCGCCTATCTGGGCGTGGCCGTGATGATCGTTGGCAAACAGTTTGGATACGCTGGCGCTGCCCGGGTCGTCCCATTCAATGTGTCGATGCATCGTTATCTCCTTGTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 67238-70014 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABYQT010000008.1 Halomonas aquamarina strain MB598 NODE_8_length_150819_cov_14.353536, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 67238 29 100.0 32 ............................. TGGTAACGGCTAAGGTCTAGCGCTGGCTGGCT 67299 29 100.0 32 ............................. TTAGCCTGCGGCTCAGTGATGCGCAAAACCGC 67360 29 100.0 32 ............................. ACACTGACGATCGCGCCGGTTCGCAGCTCGCA 67421 29 100.0 32 ............................. TGACCGTGACCGCCGCCGATATCGTCAACTGG 67482 29 100.0 32 ............................. CAGGTCCATCAGGGATTGTACCTGACCTTGCC 67543 29 100.0 32 ............................. TCTTCTTTAGATTTGCCTTTGGCGTTGTGTTC 67604 29 100.0 32 ............................. CGATATGCTGGCCGAGGACTGGAGGGTAGTCG 67665 29 100.0 32 ............................. GCCAGCGTGTTGATGATTTCAAAATGCCAAAA 67726 29 100.0 32 ............................. GCCATAGGGCATGTTGTCCTTGCCACGACGCT 67787 29 100.0 32 ............................. TTATCCAGGCCACCCGACAAGGAGTTGACGCG 67848 29 100.0 32 ............................. CGCTGCGAGAATTCCGGGATAGGATTCTTGGG 67909 29 100.0 32 ............................. TCAAAGCGATTTTTTCTTTGCTCCACGACCGA 67970 29 100.0 32 ............................. CTCTGAAATCCTCACTTCGCTGGAAGGCAAGG 68031 29 100.0 32 ............................. GTCAACTACCGTCGCCGTGTAACCTTCGCCAA 68092 29 100.0 33 ............................. TGGCGTCGCGCGGATCTCGCAAGTACGGGTATC 68154 29 100.0 32 ............................. ACGAACAAGACCGCTATTTGGCGAGCAACTAA 68215 29 100.0 32 ............................. TTCGCACGAATAACCTTTGTGATAAGCAAGGC 68276 29 100.0 32 ............................. CTACCGGCCGGTGCTTTTACAGGAGACGGTAT 68337 29 100.0 32 ............................. CAAATGGTGGACGTGACCCGCCAAGGTATTGG 68398 29 100.0 32 ............................. GATCAGTTGGCGAGGGCTCAAGCTTGGCGCGA 68459 29 100.0 32 ............................. CGCTTGGACAATCATTCCGCCCACCCTTCGCG 68520 29 100.0 32 ............................. CAGAGCTGGCAGCCCGCATAGGGCTGTCCTGC 68581 29 100.0 32 ............................. CCCGCATTGGTGACGTACTACGCCGGTTGTCT 68642 29 100.0 32 ............................. CGTTGCGAGTGTCGGTCTGTTGCTGCGTCGCG 68703 29 100.0 32 ............................. TCCTTGATGAAATCCGCCTTCACGCGCTGGAT 68764 29 100.0 32 ............................. TCGTGACCCATGGCCTGTCCAGTGCCCCAGCT 68825 29 100.0 32 ............................. CCGCTTACATCGCGGTTGAGCAGCTGCGAGTC 68886 29 100.0 32 ............................. AAATATTTGCTGACGGTATCTACAACGTTGAG 68947 29 100.0 32 ............................. GCCGTCTACGTTTAGCGCGACCGGATCAGCCA 69008 29 100.0 32 ............................. TCTGGGTGTCAGCGGTGGCGATATAACCGGCC 69069 29 100.0 32 ............................. CACGCCTTCTGGTAGATGCTTACGCAGCTTTG 69130 29 100.0 32 ............................. CTGGTAGACTGATGGCTATCGGTCCTATCGAG 69191 29 100.0 32 ............................. CTGTTAACGATGTAGCGATACTGAGCATCGGC 69252 29 100.0 32 ............................. CCCGCCGGTGAGGGCGGGCAATGGTTGTCAAG 69313 29 100.0 32 ............................. TTCTCGTACATTATTTCGTATTGTCTGATTTG 69374 29 100.0 32 ............................. TTCGTCCTTTATGTATGACATGAGCCACTTGA 69435 29 100.0 33 ............................. GTGCTTGGCGGTGCGCAGCTTGGTGAACATGGC 69497 29 100.0 32 ............................. CCGGAGGTTAAAGAGTAATGCACCTGGTCAGC 69558 29 100.0 32 ............................. CCTGCATAACCGGCCGGATCAGTGCCGCCCAT 69619 29 100.0 32 ............................. GCACGCAAAGAGCGCATCGAGGCCCTGATCCA 69680 29 100.0 32 ............................. CCGTCGGGCACCTCGATGCCGAGCATATCGAG 69741 29 100.0 33 ............................. ATGCCAGCGCAGGCAGGATGTTAGTTTTTTTTG 69803 29 100.0 32 ............................. CGTTTTTCAGCGGTATATGGCAGCAAATTAAA 69864 29 100.0 32 ............................. CCCCAGCGCCAACTGGGGCTTTTCTTTTGGGT 69925 29 100.0 32 ............................. GACATGTCGTTGTGGGTCACATAGAACTTGGA 69986 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.9 32 CCGTTCCCCACAGGCGTGGGGATGAACCG # Left flank : CAGCTTTCTGCTGTGGGTGGAGCTGCCCGCCGCCGTGGACGGCGTGCGCCTCAATGAGCGTTTGGCTCGCCATGGCGTGCATGTTGCCCCAGGCTCGCTATTTTCCGCCTCCGGCAAGTTTCGCCAGTGCCTGCGTCTGAACTACGCCTTTACCCTCACGCCCGTAATTGAAACCGCGGTACGTACGGTGGGGGAGCTGGCGGGTGAAATGGTGGAAGAGGCGCGGGCATCGCTTGTCTGACAACTACGGGGCCAGCCAATAAGCGCGCTTCACGAATGCCCCCAATGAGTAATTCGTATGTCATAAACGAGATTGCTCTTAAAAAACAACGCATACTCATACCTTGATGAATGAGGCTTGGTACGATTTTTGTGGGTTTCTCCAACATATTGATTTTATTGTTCTTTAATAATGTCTTCCTGATCAAAAATTGAGCTAAACCGCTGGTGGATTTTCTGCGGCCTATTTTTATCTTGCAGAACAGTCATCTACAATTAGA # Right flank : GTATATATAAAAAGGAAAGGTTTGACATCCTCCCCTCCCTTTAGGGAGGGGAGGATGTCAAAAACAAAGGCGTTTGGTTTGGACTGAGAGAGCGCTGAGCTAAACCATAAATTCCGCGCCCTCTGCCATCATCCTCAATTAAGATCGTGAACACTATGCTCTTTCAGATATTGGCGTAGTGCTTGATTCATGCGGGTTTGCCAGCCCTTGCCCGTTTGCCTAAAGGCTTCCACTACATCTTGGTCATAGCGAATTTTTACAGGCACTTTCCGTTCACTTACAGGAATAGGGGGGCGGCCACGACCGCGTTTCACCAACGTATTCCCCTGGTATTGATGTGCGTCCTCAAACCACGCCTCTGTAAGTTCGGGGGCATCGTCTGGATCAAACCAGGTGCTGTTCGTATCGTTGTCTTTCGCGTTCATTGCCGTACCTCATGGAAATAATGCGGCGCTTCTTTCCGCGTTGTGTCCAGACAATCACGGTGACTTTGCCGGTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 80456-85306 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABYQT010000008.1 Halomonas aquamarina strain MB598 NODE_8_length_150819_cov_14.353536, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 80456 29 100.0 32 ............................. GGATAAGCGAAGAAGGCAGCCAGCGCGCCACG 80517 29 100.0 32 ............................. CGGCCAACGCAGCGGGTAGGGTTCGGGCTTCC 80578 29 100.0 32 ............................. CCTCGCGCGCCGCCAACGGTGATGAGATGGAG 80639 29 100.0 32 ............................. CTAGACCAGCGCACGGCTCAGACGGCGTTAGC 80700 29 100.0 32 ............................. TGGCGGCGACCGGCCTGCAGAACTTCACGCTG 80761 29 100.0 32 ............................. CCCGCCAGCTTGGCTTCACCACGTTGATTGCC 80822 29 100.0 32 ............................. ATGGCCATGGTGGTATCGGTGCTAGGCATAGT 80883 29 100.0 32 ............................. TGGCTGCCATGCTGGGACTCACCCCCCAGGGC 80944 29 100.0 32 ............................. ATCGGGCAGTGCTGGAAGGCCGGGGGCAGATG 81005 29 100.0 32 ............................. CGCAGGTTGTCGAAGAAGCCGGACGTGGCCAG 81066 29 100.0 32 ............................. AGTGCTGCATCCTGCCGCACATTGATATGTGG 81127 29 100.0 32 ............................. AGCGCCCAGGGGGCAGCGTAATGTTGAATTTA 81188 29 100.0 32 ............................. GCGCTGAGATCATCAGCTACGTCATTGACGCC 81249 29 100.0 32 ............................. CAGTCAATCGGGTATTTCATGTGACTGTTTTG 81310 29 100.0 33 ............................. CCGGGCGAGATCATCGTCCAGGTGCCGGTCAGC 81372 29 100.0 33 ............................. GGTGAGCGAGAAAAAATAATAGAAGGATTCAGA 81434 29 100.0 32 ............................. CAGGTTCAATTGGGATCACGGGACGCTCAATA 81495 29 100.0 32 ............................. CCGGACATGAGCACATTAATGAACAATTGCTG 81556 29 100.0 32 ............................. CCCTTAAGGGCTTCCTGCGGCACCGGCCGAAA 81617 29 100.0 32 ............................. ATGACCTGGCGATACCAAAGCTTGTTCAGCAC 81678 29 100.0 32 ............................. CTCGGGTACTCTTTAATGGGTGACCATGAAAC 81739 29 100.0 32 ............................. CCCATCAGATGGTAGTCGGTTAATACTGCGAC 81800 29 100.0 32 ............................. CCGGAGGATGTATGAGCGTAATGAGAAGTTGG 81861 29 100.0 32 ............................. GCGGGCGCGCCAATCACCGCTACACACCGCGT 81922 29 100.0 32 ............................. CTAGAAACCACCTCGGCTGGTCGATCAACGAC 81983 29 100.0 32 ............................. TGTTTGTGCATTCAACGCAAGCGGTCATAGGG 82044 29 100.0 32 ............................. AATCCCAAACTGGTGGGCAAACCGCTAGTTTA 82105 29 100.0 33 ............................. TGACTCAGAGATCAAAACGTCGCCTGCCGAGTT 82167 29 100.0 32 ............................. CTTGCGGCTATCCTGGGCGACAAACTTGGCAC 82228 29 100.0 32 ............................. TCGTTGACGGCGAGCATCGAGGTGCGACGGGC 82289 29 100.0 32 ............................. CGTTGGCAATAGATGCGCCAATGCCTGCCAGC 82350 29 100.0 32 ............................. TGTCCCGCAACCTGTCTGCCAAGCAGAAGGTG 82411 29 100.0 32 ............................. TCCGCCATGAAACCGATCACCGCCGTAATCGG 82472 29 100.0 32 ............................. CGCGAACGGATCCGCCAGGCGGTCGAGATCCA 82533 29 100.0 32 ............................. GCGGGTGCGACCTGTTCGACCTCGAGCAGCTG 82594 29 100.0 32 ............................. CACTCGGCACGAGCTCGTAGTTGATCGACTCG 82655 29 100.0 33 ............................. GCGTCCCGCTCGGCTTTAGCCGCGTTTAAACGC 82717 29 100.0 32 ............................. TAATAATCTGCTGCTGCCATACCCACCTCCTG 82778 29 100.0 32 ............................. TTGTCCGGGGCGCTGAAAATCGAGACGGTCGA 82839 29 100.0 32 ............................. CTTCAGCGTCAGGCACGTGGTTATTGATTAAC 82900 29 100.0 32 ............................. CGCCAAGACTGCGAGCCGCCCAGAATTTTGTC 82961 29 100.0 32 ............................. TCACGCATAACCGCGACCTGCTGCAGCTGCTC 83022 29 100.0 32 ............................. CTCGGGGAGGGTTAGCTCGGGGATCTGGCCCT 83083 29 100.0 32 ............................. GTATCGCCGTCGTACACGCTTGTCACTTCGTC 83144 29 100.0 32 ............................. AAATTTGGGGTTGCAAACACTTTTTGCAAAAA 83205 29 100.0 32 ............................. TATTTTAGGATGGGAAACCGTCAGTAATGCTA 83266 29 100.0 31 ............................. TTTCAACAGCACTGGCGAATATGAGGAAGGG 83326 29 100.0 32 ............................. GACTTGAATACAACTCCTACATGTTTGCCGAG 83387 29 100.0 32 ............................. TTGTCGCGCCGTGCAATGAGGAATAGGCGTTT 83448 29 100.0 32 ............................. CGACTCTTTGCTCATGTGCTCTGTCTGCTGGA 83509 29 100.0 32 ............................. TTCCGCGAGCTCACCCGCCAGGGCTACCTCCT 83570 29 100.0 32 ............................. TCGATCACTGGTACTTGGGCACACCGGCAGTT 83631 29 100.0 32 ............................. CTGGCCGACGGCACCGGCCGCCGGATGCCGAT 83692 29 100.0 32 ............................. CTCCTGGCCGCCCTTATCCTGCTTCACCCACT 83753 29 100.0 32 ............................. AACACGTAGGCTTCACTTGTGCCTGTTTGACT 83814 29 100.0 32 ............................. CGAATTTCAATGTCTTCATGCTGACTATCTGG 83875 29 100.0 32 ............................. TTGGCCGCGCACGGCAGGTATGTAATTTTCAT 83936 29 100.0 32 ............................. TAGTATGAAAAAGAGTCCCGATTTTGAACACG 83997 29 100.0 32 ............................. TAGCATACGTCCAATGGACTTGATCATGTTCG 84058 29 100.0 32 ............................. GTGAGCCACCGCTAATTGAGGTACCTGATGAT 84119 29 100.0 32 ............................. GTCGCCAGGTTCTAGTATTCGCAACTACAAAT 84180 29 100.0 32 ............................. CACATCTTATACCCGCCTCAACCATGCGTACA 84241 29 100.0 32 ............................. TTGGTCTTGATTCGATGCCGTGGCCATGTTCG 84302 29 96.6 32 .......A..................... TTTTTGGTTAACTGGCACCACGCTTTAATGGC 84363 29 100.0 32 ............................. ATTTGGATTGGTCGATTAACGGTCGCTATTAC 84424 29 100.0 32 ............................. CCCTGGAGGCAGGCGATGCGGATAGTGATTCT 84485 29 100.0 32 ............................. CACGCGGAACACGTTGACGATCTCGCCATCCA 84546 29 100.0 32 ............................. GTCGATATCAATCTCGACCAAATTACTTTCTG 84607 29 100.0 32 ............................. CCGGCGGCACGCTCGGCACGTGTGAAAACGCG 84668 29 100.0 32 ............................. TCGTCAAAGAGACCTATCATATTTGCGATACT 84729 29 100.0 32 ............................. GCCTCACCCCCACATACGGCCGCGCTGGCGCA 84790 29 100.0 32 ............................. ATTACGGTCGAGCACCGGTGCTGCAGGCCGTC 84851 29 100.0 32 ............................. TGGTCGTGGGTAGATCCCCTCAAGGAAGTATC 84912 29 100.0 32 ............................. ACGGCCAGGAGCTTTACGACCTGCTGCTGAGT 84973 29 100.0 32 ............................. GCCATTCAAGGCGTCGCCGGAACAATTATCGA 85034 29 100.0 32 ............................. CAGGCTCATAAATGGGGCGTGCGCCGCGGACT 85095 29 100.0 32 ............................. TGCGAAAAACAGGTGGCGGAACCAGCGTTGCT 85156 29 96.6 32 ..............T.............. GTGTCGGCCTGGTTGTTCCCACCCTGCTTTCG 85217 29 96.6 32 ....................A........ TTCACGATGGGCTGACTACGGACTTTTCGGGC 85278 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 80 29 99.9 32 CCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : AGATCGAACCGCCGCCCCCGCCGGCCGATGCCGTGCCGCCCGCCATTCCCGAGCCGGCATCGATCGGCGACAGCGGCCACAGGAGCCAATGACATGGCCATGCTCGTTGTCGTTACCGAAGCCGTACCGCCACGCCTGCGCGGGCGGCTCGCCGTCTGGCTGCTGGAGATACGCGCCGGTATCTACGTGGGCGATGTCAGCAAGCGCATCCGCGAAATGATCTGGGAGCAGATCGAAGCCCTAGCCGAGGAAGGTGGCAACGTCGCCATGGCCTGGGCCAGCAACCACGAATCCGGCTTCGAGTTCCAGACCTTCGGCGACAACCGCCGCGTCCCCATCGACCACGACGGACTACGCTTGGTGCGTTTTTTACCGCCCATGGATAAATAACTGTTTTTATTGATCTTTAATAATATGCAGCTGTACAAAAAATGAGCAAAATCGCCGGTGGATTTTTCGCTGGCGATTTTTCTTTTTGAAAACAAGTGACTACAATTAGT # Right flank : GACATCGCCCGATTCTGGGCGACTAGGCTCTATCATTCCCCGCAGACGCACTGACCACCAAGATAATCGCGCACATGCGCGAACACACGATTGCCTGAACGGGCGTGAAATAAGAAACGATGGTGCAAGATGTAGCTGGGAGATGGCGGCGCGTTCGAAACCGGGGTATCAAGTAGGAGTGCTTTCAAGCACGCATGTTCAATTCGTCGCGAGCCATGAAAGCTCGTGGCGCGAACCGTATGAAGGAGGTGGTCATATGTTACGTTCACTTGGCTGGCTGACAGCCGCCGCCATGGGGCTTTCGATCGGTTTTGCCGCTTATGCCAACACGGAGCAGGCAGCCGACGAGTCATCAACGACGCCGGAGGCGGTCGCCGCGCAGATGAGTGACACCTGCGCCCCCATCGATGAATCGCTGGGTATCACGGCCCAGCGCTTCACGATGGACGATGACATGGGCGGGGAACTGTGGCTCGTGCCGTGTAACGCCGGTGCCTACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //