Array 1 1412509-1410424 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007160.1 Listeria monocytogenes WSLC1001 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1412508 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 1412442 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 1412376 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 1412310 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 1412244 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 1412177 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 1412111 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 1412045 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 1411979 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 1411913 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 1411847 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 1411781 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 1411715 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 1411649 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 1411583 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 1411517 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 1411451 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 1411385 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 1411319 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 1411253 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 1411187 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 1411121 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 1411054 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 1410988 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 1410922 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 1410856 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 1410790 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 1410723 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 1410657 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 1410591 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 1410525 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 1410459 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 2199778-2200454 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007160.1 Listeria monocytogenes WSLC1001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2199778 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 2199843 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 2199908 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 2199972 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 2200038 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 2200101 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 2200165 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 2200230 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 2200294 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 2200360 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [2200383] 2200426 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 95.3 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //