Array 1 425085-424754 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDID01000001.1 Escherichia sp. E3659 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 425084 28 100.0 33 ............................ TGTCTCTGTTTGACTCTGCTTCGAATGAACGAA 425023 28 100.0 32 ............................ AGTGTCAGACCAGCGGCGCTCTCCGGATTGCT 424963 28 100.0 32 ............................ TACACGCTCAATCGACTTGGTTGCAAAACCGT 424903 28 100.0 32 ............................ GTCGCAAGGTAGCGCGTTCCCGGTGCACGTAA 424843 28 100.0 33 ............................ CAAAATTAAAGGCGGCAAGCCAACATCTGTCAT 424782 28 92.9 0 ..........C.............C... | C [424759] ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.8 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTTATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCGATGGGCGCACGTCCGATGGCACGTGTGATTCAGGATAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGCTCGCTGGTGGATGGTGGCCAGGTGACAGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCATAAACCGGAAGCCGCGCATTAATCAGATTGTTAGGTAAGTTGATGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATAGGGTGGAGGAGGTCCAGACCCTTTTTTTGATGATGATGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATGATGGCAGAAATTTAGCTGCGTTATGGCGTTCTCAACTCCGAACCATTAGCCACAACACGCAATAACAATTGTGATAATTGCGATAGAAATCAATTTCTCGCACAGAAATCAATGTTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCCAATTACCTTACTCCATCTGACCTCAAAACCATTCTCCACTCTAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAATATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACTCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 154608-154220 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDID01000003.1 Escherichia sp. E3659 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 154607 28 100.0 32 ............................ GATTGCCGGTCGCGACTTCCTCCAGTCCTCGC 154547 28 100.0 32 ............................ ATAGCGTATACCGCTGGAATCTAGGGTGATTA 154487 28 100.0 32 ............................ ACAAGGTTCTGCTTTGCTGCCTCCTGAATGCT 154427 28 100.0 32 ............................ TTCGGCAGATGGTCCGAGGCCATGATGATACG 154367 28 96.4 32 ..........................G. TGGCATTGAGTCGGTAATTTTGCCGTTGGTGT 154307 28 96.4 31 ............G............... GCAAGCTGTCTCGCCCCTTCGGGCTTCCGGC G [154281] 154247 28 82.1 0 ..A.T...............T..TC... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTATGACT # Right flank : CTTAACACACCATCCTCCAGTATTTATTCCCCGTAACTCCAAACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAATTCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACTATAAGCGCAACGTATAAGGGGGCGGTGAGA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 125524-126103 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDID01000039.1 Escherichia sp. E3659 contig_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 125524 29 96.6 32 .............C............... CTATCGCTGCTGCCTCGGCCGTGTCCGTTGCG 125585 29 93.1 32 .............C..............T TGTTATATTCCTGCCGTGTCAGACCACATTTC 125646 29 96.6 32 .............C............... ACGCCAGCGGGTGGAAACTACTACCTCAATCT 125707 29 100.0 32 ............................. GTTGCAATGATTAGAATAAATATTGTTCCTGC 125768 29 100.0 32 ............................. TTTTCAGGCGGCTTGTCGCGCGCTTCACAAAG 125829 29 100.0 34 ............................. GCGGGCAACCGCGCACGTTTTCCAGTAAAAGCGG 125892 29 100.0 32 ............................. CCGAATTCAGTGGGTGCGTGTGGATCTGGTCC 125953 29 100.0 32 ............................. CAATGATGGACAGTGCTGAAATCGGGGAGGTA 126014 29 100.0 32 ............................. AAAATTGCTACAGATAACGAGACGGCACAGAA 126075 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 10 29 98.6 32 GAGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACCCATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACCCATTTATATTTTTTGTCGCCTCTGAAAACTCATCCATTTTGCCCATTCCGGACTAATCATTGTCATTCTCTACAAATTCTGTGGCGTTAATTTTTCTCTGGGATGAAAATTATTACGTCGGAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTCAATCAACGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAGAGTTCCCCGCGCCAGCGGGGATAAACCGAAAAAAATCGACCTGAGAAAAGCTGCACGTGGGAGTTCCCCGCGCCAGCNGGGATAAACCTCGATCTCATAGGTCTCGATATTGCTGCCGGAA # Right flank : TGAGTATCAGTAAGCAGGAGGCAGTCCGGTGCGACGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 55-388 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDID01000040.1 Escherichia sp. E3659 contig_40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55 29 96.6 32 ............................T GAGTATCAGTAAGCAGGAGGGCAGTCCGGTGC 116 29 100.0 32 ............................. AGATCACGCGCGAATGCTGCGTAATCGAAATA 177 29 100.0 32 ............................. TTGTGAAGCGATGCCATATCTGCGAAATTCTG 238 29 100.0 32 ............................. TAGAGGGTGACAACCTTAACGGTCTGCATAGA 299 29 93.1 32 ..........T..C............... CTCGGTGATTTTCTTGATTCGCAATTGATGAA 360 29 79.3 0 ............TT........C..T.AT | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.8 32 GAGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : CCCGCGCGAGCGGGATAAACCGAAAATTGCTACAGATAACGAGACGGCACAGAAG # Right flank : TTCAGGTATGTTCAGGCCGGGCAGTTTCCCGCCCGGCCTTCCTCACTTACGCATTCGACCAGCTCTGGATAGAATCCGCATTCCCCAATTCACCATGCATCACTTCATACGATTTTTTCAGAATCACATCAGTGTGTTTGGTTAAATCTTTGAAAATGCCTTTATTCATCGCGTCGTAGCGTTTGGCATTGCCCTCAACAGGCATAAAGATATCTTTCACGCGAACCATTTTGTCGACAGCCGTTGCGTAATCCGGATACAACCCCAGACCTACCGCCGTATTAATCGCTGCCCCCAGGCTTGCACAACCGTTAATGGCGTTACGGCGTGCCGGAAGGTTGAACACGTCGGCAAAAATTTGCATAAACAGATCGCTGTTCGAACCACCGCCAGTAATGATTACATGCTTCGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTGTTCTTCAGCGTCAGCGCCACGCTTTCCAGTATCGAACGGTATATCCATGCG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18428-18639 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDID01000040.1 Escherichia sp. E3659 contig_40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18428 29 100.0 32 ............................. TTTATCAGCCCACTCAACCCCCGTCATCGGTA 18489 29 100.0 32 ............................. TTTGATAAACCAGCGGCGGCGGGGTGACAATG 18550 29 100.0 32 ............................. TATATAGCGTGAATTTTGCGAATTATGCACTG 18611 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTCGCCCCAGCCTGGTGCTGGCACACAGTGCCCGCACATTAATGGACCGCTTTAATGAATCACTCTGGTCTGGTGATTTAGTCGGGTCAGAAGAACCGGACGAACAAACGTTCAGTCAGGGATGTGCGGCCTGGTTTGCCGACAGTAACAAGAAGGCGTTGCTGGCTGAAATTGGCGTCGGCACTTTGGATCAGGCGATGATGGCGGTGCTGCCGTTCAAACATAATAATCTGCGGCTTCTGGGGCTGAGTAATAAAATCCTGCTGGCTGATGAGATCCACGCCTGTGACGCTTACATGTCGTGCATTCTTGAAGGGTTGATCGAGCGGCAGGCGCGCGGCGGAAACAGCGTCATTTTGCTTTCTGCTACGTTATCCCAACAGCAGCGCGACAAACTCGTCGCCGCCTTTGCGCGTGGCGCAGAGGGTCAGCAAGAAGCTCCGTTCCTGGAAAAAGGAGATTACCCCTGGCTGACGCATGTCACGAAATCGGATGTGAAT # Right flank : GCGCGGTCGCTGCAATTATGGGCGTTGGCCGCGTGTTCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 40-1043 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDID01000041.1 Escherichia sp. E3659 contig_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40 29 100.0 33 ............................. CGATAGTTTGATAATGTGTCATGAATTAAATTG 102 28 96.6 32 ........-.................... ACATACTTTGCAGGCGATCGGCAGCTCTGGAA 162 29 100.0 32 ............................. TTTCTAGCTATCGTATTCAGCGACTTAAAAGG 223 29 100.0 32 ............................. GTATTAATCAGCACCCTGTCATGATCTTTTTT 284 29 100.0 32 ............................. AGATGACGGGCAGGAAATCATCAAAGTCATAC 345 29 100.0 32 ............................. GATGCGTTGTTGTATTTAGCCGCGATGGCGGT 406 29 100.0 32 ............................. TACGTTCGAAGCTGCTCAATACTCGCCTGGGA 467 29 100.0 32 ............................. TAGATTTTGTCCGGCTCAGGTGCGCCGATGGT 528 29 100.0 32 ............................. AAAGAACGTTTCAGCATAGCTCGCTTTATCAA 589 29 100.0 32 ............................. CGAATCCCAATTTTGGTGTCTCGGTTGGCGCT 650 29 93.1 32 .A..........T................ TGTCGCGCAAGGCGATATAATCCCCTTTTCGC 711 29 93.1 32 .A..........T................ GCCATCTATTCAGGGCGACTAAATGATGCTGT 772 29 93.1 32 .A..........T................ GCAGAACGAGGCGTCAGTCTGCCGGAGATAAT 833 29 96.6 32 .A........................... CACGTAAACGACTGAGTGAGTACATAATCACA 894 29 96.6 32 .A........................... GTGAGTTTTTATTTCTGATTAGGCGTAATCAG 955 29 96.6 32 .....................T....... AGCGGGAGTGATTTAAAACCGGCGTTATACGT 1016 28 86.2 0 ......................-.CT..C | ========== ====== ====== ====== ============================= ================================= ================== 17 29 97.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAAACCGGCACAATACAACTCCTTTCGTCTCGCAGTCAGG # Right flank : CAACTCCCATTTTCAACCCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACATCACGGCAGCGGCGTTCTATTCTTCCAGGAAGTGCCTTATCTATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCTGCAGGGAATGCGGCTGTTTTTGCTCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTTGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTGGTAGCGGCAATTCGATGACTGCGGGCAATTGCCAGCGCCCGGTCGCGCGTTAATTTCCTTACTGCTTCAGGTGTTTTTACGCCACTGTTGAAATACAGCTTATCGCCAACAATCAGATTATCGAGGTTAACCACCAATAAAGTATTTTTCTTTTCGGTATCACTCATGCGCT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 332-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDID01000070.1 Escherichia sp. E3659 t1_c74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 331 28 100.0 32 ............................ ACGACAAACGGCGCGTCCAGATCGCTTGGTCT 271 28 100.0 32 ............................ TCATTTCGCGCCGCCGTTACCAGTTCCTGAAT 211 28 100.0 32 ............................ GTTACGACTGGTGGCAAATAACCTGAGTGATA 151 28 100.0 33 ............................ CGGCCATCAAGGCCATCAGAAAGCATTCATTTT 90 28 100.0 32 ............................ AGGTTATGCCTATTCCTCCGCTTCACTACCTC 30 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCATCCCCGCCAGGCTGTGCAACATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATAGAGATTGATTCGTTTGGTTACGCAATGAACACGCCGTTTGCGTGACGGAGATTATGAGCGTATTTGTTCTGTTCAATTGTTTATCAAAAGCTATGCATAAAATATGAGATTGAAGAAGTACCAAATTGACCCTTTTTTTAGGTTGAAATGTAACTCATTGATTTTTTTCTTGCTATTTTGAAGTCTGGAAAAAGGGGTTGAATCTGCGACTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //