Array 1 1036472-1036988 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024131.1 Escherichia coli strain 14EC007 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1036472 29 100.0 32 ............................. CGGCCCATAATATTAATATAATCCACATGAGG 1036533 29 100.0 32 ............................. CATATCAAGAATTTATGGACTCGGGTGGCAAA 1036594 29 100.0 32 ............................. GCAAAAACCGGGCAATCGCAAAAAGGCGTAAT 1036655 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 1036716 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 1036777 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 1036838 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 1036899 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 1036960 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1065404-1066408 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024131.1 Escherichia coli strain 14EC007 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1065404 29 100.0 32 ............................. ACAATCCCACGCCGATAATCTCTATACAGCAA 1065465 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 1065526 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 1065587 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 1065648 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 1065709 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 1065770 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 1065831 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 1065892 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 1065953 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 1066014 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 1066075 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 1066136 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 1066197 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 1066258 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 1066319 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 1066380 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGTTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //