Array 1 39284-39731 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHE01000015.1 Gilliamella apicola strain Bim3-2 Gilliamella_apicola_Bim3-2_contig111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 39284 29 100.0 31 ............................. TTTTACCGCCAGTTATTAATGGCGCTCTGAT 39344 29 96.6 31 ............................G ACCAAAATCCTAGCATCTTTAAGCGATAATG 39404 29 96.6 31 ............................T ATATTTATACATTATAGATTCTCGTCGTGGT 39464 29 96.6 31 ............................T TGTTCATGTTTTTAATAAACCCCAGTACGCT 39524 29 96.6 31 ............................C TACATTCCTCGTTATGGTGAGCCTAAAGTCA 39584 29 100.0 31 ............................. TTAGTCGGAAGCTTGATATATTTTAGCGTGT 39644 29 100.0 31 ............................. AATCAGACAATCGCCGTCGATCCTGCTTTTC 39704 28 93.1 0 ....................-.......T | ========== ====== ====== ====== ============================= =============================== ================== 8 29 97.4 31 GTTTACCGCCGCATAGGCGGTTTAGAAAA # Left flank : AGCTTATTATTTAATGGTTGTGGCATTAGTGGGTTTACTTACAGGCATAAAAATGAAAGAAACCGCAAACCGTCCACTCCGCGGCGCAACGCCCGCAGCATCAGACAGGTCAGAGGCAAAAGAAATATTATCGGATCACTTTGACTCAATAGAACAAAAAGTCGAAGATATAGAACAGCAGATCGAAACATTACAACAACAGCGTCAGAATTTAGTCGATCAGCATCCTAAGTTAGATTGATTTTTTTATTTTTGGTTTTGTATGTTTTGTTTAACATACAAAACCAAAATTTAATAAAATCAAAACGATATATAAGTAATTTCTAACGGTAAAATTGATCCATCATAGAAATAGCTAAAACACTGCCAACCCTTTTTTTTATTAATAAATAAAAGTAAATAAAAACAAAGTATTATGTAAGATCTTCAAAAAAGGGTTTTTGAAAACAGAAATCCTATTTGCCTTTTGCTAAACAGGGTTTATAGTATATCGGTTTCTA # Right flank : TTCTGGCATTATTATTTTTAACAGCATAACGTTTACTACTGTATAACAGCTTAATTTTAATTAAAATTATTAAATTAAAAAACAAAAAAGTTTGAAAGTTAACTGTGAAAAAACTATTTGCACATTAACTTACTATGATATTGTCGACGATATTCAGTGGGTGTTCGCTCTGTCTTTTTTTTAAAAATCCGACAAAAATAATTACTATCTTTAAACCCCGATGCTAGAGCAATTTCTTTTATATTTAGATCATAATCCTTTAATAGCGATTTTGCATATTCTAAGCGAATATGATTTAGATATTCATTTAGCCCTATTTTTCCCTCGCTTTGAAATAGATGTGATAAGTAATTGGGTGAAATGTAAAACATATTAGCTAAAAAGTCGCGTGTAATATCTTCACGAAAGTGAGTATCAATATATTGGCGAATGGCTTCATATAGGCAAGTAGTTTTGGATGATGTTTTGATATTGATATTTAACAAATCGAGTGTGTTGCT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGCATAGGCGGTTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 121-633 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHE01000140.1 Gilliamella apicola strain Bim3-2 Gilliamella_apicola_Bim3-2_contig65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 121 28 100.0 32 ............................ GCTATCTTGAGTTGTATTTGCGGCAGACGAAT 181 28 100.0 32 ............................ TGAATGGCATCACAATAAAGATAATCTAATTG 241 28 100.0 32 ............................ AAAATTGGGTTAACCTGTGTAACGGGTTGGCT 301 28 100.0 32 ............................ AACAGGACAATACAACAAAATCTTAGCTGACC 361 28 100.0 32 ............................ TATACAAGCCTCACTGTTTGGGTAGTCACGCC 421 28 100.0 32 ............................ AGACCAAAACGGCAGGGACAAACCCAATGAAG 481 28 100.0 32 ............................ TACAACCTTACTTTTTGGTGTTAAAAATTTAT 541 28 100.0 33 ............................ AGACCGATCCACGACAACGCCCCTTTAACTTTA 602 28 96.4 0 .......................T.... | TA,T,T [622,629,631] ========== ====== ====== ====== ============================ ================================= ================== 9 28 99.6 32 GTTTACCGCCGTGTAGGCGGTTTAGAAA # Left flank : TTAACAATAAATTAAAATCAATAAAAACAAAATGTTAATAATATCTTGTAAAAAAGGGTTTTTGACAGAAAAAATCCTGTTTGCCTTTTGCTAAATGGAATTATAGTATATTGGCTTCTAG # Right flank : AAAAATAGAAATTTCTGTATAACTGGTTGATTTTAATGAAAATAAAAAATTAAATAAAATCAATGCTCTACCTGAACAATTTTATGGGCGTAATACATCCCATAACATGGTAAGGATTATATGTTCGTTGGTTTTAGGTAATTCACTAATTCCTTGGTTTAGAAATTATCACCAATATTCATGATATTCACAAAAGTTAAGACTTACAAAACCTAACACCATATGCTAATTAAAAAATTGCATAAAAAACTAGCCAAGTTTTTTTAAAATGGCTATACTTTAACCTCCTTAAAGGAATAGATTATTAAACAATCAAATAAATATAAAAATTAAAATAAATCATTAATTTACTTGACAGGCGAACCGTAATACATTATCATTTTAGCCACCAGACATGGCAAACCTATGTCTTAAATTTATCAAATAAACATACTAGTTGGATTTTTAGCCCCGCCACGTTTATATTTTCAAAGTTATCTTCCAAATTATTATCAAAATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGTGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 3356-2008 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHE01000010.1 Gilliamella apicola strain Bim3-2 Gilliamella_apicola_Bim3-2_contig107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3355 28 100.0 32 ............................ TTGCTTGAAATCACCTGCTCTTTTTAGTTCTG 3295 28 100.0 32 ............................ AATGGGGAAGTTGCAGCTTGCGATATTAGACC 3235 28 100.0 32 ............................ TCTTGTAAAGTATGTAAAAAAGCTTTTTCATC 3175 28 100.0 32 ............................ TTAGGCGTCGGTGCTACTGAATACGTTCCTAT 3115 28 100.0 32 ............................ TGCCTGGCAAATCACCGTATAGCATTACTAAA 3055 28 100.0 32 ............................ GACGATAGATTGCCTGATAATTTGAGTTTTAG 2995 28 100.0 32 ............................ TCGTAGGCGGGTGCGGTGTAGCACGGATTAGG 2935 28 100.0 32 ............................ TGATCAAGCAGACGAAACTTGGTTGATCCGAC 2875 28 100.0 33 ............................ AATAATCCGTTTGTGACTGGTTATCTTCTGCTC 2814 28 100.0 32 ............................ TTATTGGTTAGTTTTTTCCAGTCTGGTGTACC 2754 28 100.0 32 ............................ GATACTACCGAGAGTGGCTGTTTTATCTGCAT 2694 28 100.0 32 ............................ CATCAGGAACATAAATGCCTGTTTGGTGCTGT 2634 28 100.0 32 ............................ AAAATACTCACACAATGCTTTCATTGTCTTTA 2574 28 100.0 32 ............................ AATGTTTCGTAGCCCCCAAGTAAGTATTCTTT 2514 28 100.0 32 ............................ AACGCTTAATGCCGTTTCGTCGTGATGAGCTG 2454 28 100.0 32 ............................ TCTTATCGATACGGGACAACTTCGGGCATCAA 2394 28 100.0 32 ............................ ACTAAAAATACGGAGAGGAAAATAACTACAAA 2334 28 100.0 32 ............................ ATTTTTAAAAAGCCCAGAACTTGTTTGTAATC 2274 28 100.0 31 ............................ CACAACACCCGCAATCCCGAAAAAAAAACTG 2215 28 100.0 32 ............................ GCTACATGAGCGGTTTTATTGAACAAATTGAA 2155 28 100.0 32 ............................ AGATGCCGATTCCAAAGCTTCATCATTAACAT 2095 28 100.0 32 ............................ GTCGACAATAAAAGGTTATTTACGGTTCAGAC 2035 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGTTTAGAAA # Left flank : AACAAAGAACCAAGTACATACTGTTTAAAATCCCAACCATCGACAGCACCACGGACTTCGTCGGCAATTTTCCAAATTTGTCGTTGTAGTTGATCGCGTTGTTGCGTTTCGGTAATTGATTTAGCGTTACTAGATGTCATATTTTTCAAAATTCCTAAATAAAAAATAGGTGCTGCCTAATTAGAAAGTAACTAATTTTTATTTTCATATTAGTCATTTTATAGCTACCTGTTATAGGTGCTATAGCATAGCTGATTTGTTGTTATTTTTCCATCTGGGGTGTTTATTAAAAACTCAGCCAATGGGTATTTTGAACTTTAAGGTTGGGAAATCTTAAAAAATAACAAAGCAACAAAATCTAAAAACAAAACCCTTTTTTTAGCTATATTTTAAAAGTTAATAAAATCAATAAATTAAATTTATCTCTAAAAAAAGGGTTTTTAAAACCTAAATACCTATTTGCCTTTTTACATACTATATTGATAGTATATTAGCTTCTA # Right flank : TATATAAAGATATGTCAGGGAGAGTTAGTGCTTCATGAAGTCTTTTTGTATTACAAACGGTTGAATGAATGGCCGTAATACGTTTATTCAAATTGATAATAATTTTCTTTATGATATTAACGCCATATCACTTGTTGGTGATACGGCGTTAATTTTATTTTATGAAAGTTTATTACAGTAGTTTAACTGACTATTTCCTATAACCAACAATTGATTCCTACACATCATATTAGTTGATTGATCATTATTTTGCCATTTTTGGGGTATCTATCTGCTTTACTAATGTAAAATCTATAGCTAATAATTTTTCTAATCGTGCAAGTATCCAATTATAACGATCTTTTAATGCATCTTCATGCCATTGTTGATTAAATGTTTTTTGATTAAAATCATCTAATACTTTTTGAGAAAGGCGAAATGCAGTCGTGTTATTAGTATGATTACCCTGATATACGATCATTTTGACATTGAAAGGATTATTACTAGCATCAATGTTTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3626-3299 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHE01000171.1 Gilliamella apicola strain Bim3-2 Gilliamella_apicola_Bim3-2_contig93, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3625 28 100.0 32 ............................ TTGATTTAGATATAAAAAAAGCGACTGAAGTC 3565 28 100.0 31 ............................ ACTGTTCAAGGTTGGCTTTCTAATGAATCCG 3506 28 100.0 32 ............................ TCATCGAAAGCTGAGGGTTTGCTTTATCAACG 3446 28 100.0 32 ............................ GCTACATGAGCGGTTTTATTGAACAAATTGAA 3386 28 100.0 32 ............................ ATTCCCAAGCCTTTTTCGATCATTACTGAATG 3326 28 85.7 0 .................T..CA..T... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 32 GTTTACCGCCGAGTAGGCGGTTTAGAAA # Left flank : TCATCCAACAGCTCCTCTGAAAGCCCGTTGGTTTTATAATTATGAAATTGATAGCTTACATGATGATCATCAAGCCAAGTAAAAGCTTTTTTCATCGTGTTGCAGTTTTTGATACCGTAGATGATGTACATAGTAGGTGATCCAACATTGAAAATAATAATAAAGATTATAACAGTTATCGGCCTGATGCGGCAAACTAAAGGGATTTATTTGTTTTAATTCATATTAATACTCATATCTAATGTTAGTTGTTAATGCCAAATAGTCGCTAGTGAAAGCTTGAAATTTTAAATATTTTGGATGGTGAGTTAAGAAATGAATTTTTGAACAGATAATTTCACTCATTTTAAAAAGATCAAACTATTGCTAACCCTTTTTTTTAACAATAAATAAAATCAAATAAAAACAACACACTAAAAAAGCTCTAAAAAAAAGGGTTTTCAAAAGCAAAAATCCTATTTGTCTTTTGCGAAACAAGGTTTATATTATATCGGTTTCTA # Right flank : TCAAAAAAGCCCTCAGACGAGGGCAGTGGATGTCTACCGACAGAATAGCTGGCTATGGTTATTAGCTGTGTTCAAAAATTTTATTGAACGCTTAAGCTAGTTGTCATTATCAATAGTATAAAATGATTATTAATTAACTAATTGCAGCATTTTTCAACAAAATAACTCATAATTCGATTATCGACGGTTAGTTCGGGATGAAATGAGCAAGTCAAAATGTTATCTTGCTGCGCCATTACACAATGATTATCAATAAAAGCTAGCTGATTGACTTGCTCACCAGCTTTTGCAATATATGGAGCACGAATAAATACTGCTGGAATTTGCTCACCAATAGTTGGTATATCTAACGTTGTCTCAAAGCTGTTAATTTGCCGACCAAAACCATTGCGTTCAACGCAAATATCCATCAAATCTAATAATTCGACTTCGTTATGAGTTGTCGTTTTGCCACAAAGCACTAGCCCAGCACAAGTACCTAAAATTCCTTTGCCTTGTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGAGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //