Array 1 80132-81808 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053025.1 Halomonas sp. PA5 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 80132 29 100.0 32 ............................. TTCTACGTATTTATTAGCGAAGGTTTTATACC 80193 29 100.0 33 ............................. ATTGGGAGTTTCCGCACTCGGCAAATGCCGTTC 80255 29 100.0 32 ............................. CCCGGTGACTTTGGATGGCTCAAAGCCAATGA 80316 29 100.0 32 ............................. CTTCTGGTTTGGGGCAGACCGCTATCTCCAAT 80377 29 100.0 32 ............................. TGTGTATACACATTATGATATATGTTATTGCA 80438 29 100.0 32 ............................. TACAAATTGACCATTATGTGAGATAGTCCCGG 80499 29 100.0 32 ............................. CCCGATGGAAATGTATTATTCGCTTGGATCAA 80560 29 100.0 32 ............................. CGCACTTTGAAATAAGCCCATGGCGTAACGAT 80621 29 100.0 32 ............................. CGTACAACAATTATTACACCGTCGTACATTTG 80682 29 100.0 32 ............................. TATCCGCTCCAATACACACTAGAATGCATTAT 80743 29 100.0 32 ............................. GCCATTATTCATTGCGCTATACGTCAACAGGC 80804 29 100.0 32 ............................. ATAAATGGCTAGTCTATAATTTATAGACCCAT 80865 29 100.0 32 ............................. GCGTGTTTAAAGGCGTGTCGGCAAATGTTGGC 80926 29 100.0 32 ............................. GCGACGTGCTCGATGCTGATTTAACTGTCGTA 80987 29 100.0 32 ............................. TTTGCAGGTGCTCATAGCCCCCACCCTCGACG 81048 29 100.0 32 ............................. ACATTCGACGCGAGGTGATGAACGGCATATTA 81109 29 100.0 32 ............................. AATCCGGACTTAGCGTTAAATACCCAATACCC 81170 29 100.0 32 ............................. CGGCCAAGTAGCTCGGGCACGCGCGAGCCGAA 81231 29 100.0 32 ............................. TCGCGCTCGTCTAGCTCGCCGCTACGCAGCGA 81292 29 100.0 32 ............................. CGTTGAAGCGATCGAGCAGCACGCCTACACTG 81353 29 96.6 32 ............................C CGCCAGAAACGAGATGAGCACGTCCTCGCCAC 81414 29 100.0 32 ............................. TCAAGCGCGCTCTTGACGGCGCTGTCCAGCAG 81475 29 100.0 32 ............................. TGACGCTTGGCTGGGGTGGTGAGGAATACACC 81536 29 100.0 32 ............................. GGTATGTCCGATGAGTCGTCCATCATGCCCTG 81597 29 100.0 32 ............................. CGTTTCATTTTCGTCCTTTGAACGCCGATGCA 81658 29 100.0 32 ............................. TCTGGACGCTCGGATAGGCGAAGCTTTGTCAT 81719 29 100.0 32 ............................. GCGGTGGCGCCGACCATCGGGCAGGTGCCGGT 81780 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.9 32 CCGTTCCCCACAGGCGTGGGGATGAACCG # Left flank : GTGAGATCGAACCGCCGCTGCCACCCGCGGACGCTGTGCCACCCGCCATCCCTGAACCGACATCGCTGGGCGATAGCGGCCACAGGAGTCAATAGGATGGCCATGATCGTTGTCGTCACCGAAGCCGTACCGCCCCGCCTGCGTGGACGGCTGGCCGTCTGGCTGCTGGAGATTCGTGCAGGTGTGTATGTCGGCGATGTCAGCAAGCGCATTAGAGAAATGATCTGGGAGCAGGTCCATGCCCTGGCAGAGGATGGCAACGTCGCCATGGCCTGGGCTAGCAACCATGAATCCGGCTTCGAGTTCCAGACCTATGGCGCTAACCGGCGTGAGCCTTGGGATCACGATGGGTTGCGTCTGGTGCGCTTTCTGCCCATCGAGGCTAAGTGATTGGTAATACAGGATCTTTAAAAATTCAGGCTGTACAAAAAACAGGCAAAATCGTCGGTGGAATTTCTGCTGGCGATTTTCCTTTTGTAGATCAACTATCTACAATTAGA # Right flank : GCATGCCCGCTGCGCAGCCCTCGGTATCCACGACCTGGCGGAGGGACAGGGATTCGAACCCTGGAAGGGCTTTCACCCTTGCCGGTTTTCAAGACCGGGCTATTACGGCTTGATTCCCTTTTATAATCAACTAGCTAGAGATCATCAGTATAACGCTTTCCCGTTATACTCATGGCCTTTTGACTCGTTCCCGCCTATTTTTCACGCCTTCTGGTTCCCCCCGTCGCTTCTTCGAGATACTGTATGGATCACCAGTATCAGTAAGAGGAGGCCATCATGCCAATGACACTCATCCCAGCCCACCCTGCTCCGCCCCGTGCCTATCTCCCCTTCCCCCTGACACTGACCCGCGCGGGCATTAGTGGGTTTCCGTCGCCGGCCCAAGACTATGAAGGCCGGACGATGGATCTCAATGAGCTGCTTGTCAGGCGCCCCTTGAGCACCTTTATCACCACCGTCGATGGCGACAGTATGCTCGACTACCATATCTACCCTGGGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 369078-369583 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053025.1 Halomonas sp. PA5 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 369078 29 100.0 32 ............................. TTATGGATAAATACTGGCTGGCTAAATATGTC 369139 29 100.0 32 ............................. GAAATGAGTCAGCGCGAACAAATCATCAGCCT 369200 29 100.0 32 ............................. TTTGCCCATGATCTGCGTACACATAAACAGGT 369261 29 100.0 32 ............................. TCATACTGCCGGAATTCGCCCTTCCAGTGGGT 369322 29 100.0 32 ............................. TGCCAGGAGTACGCCCGGACCTTCCCTGAGCA 369383 29 100.0 32 ............................. CTTGGGGAAGAAAGGGTGGAGTATGCCTTAGA 369444 29 82.8 22 .....................TC.C..GA AGTCTTGCGTCACGATCTCGCC Deletion [369495] 369495 29 96.6 31 ............................C CGAAAGGATTGCTCGAGTATCACGTCCGCTG 369555 29 75.9 0 ........TG......CA...C.C...A. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 95.0 31 CCGTTCCCCACAGGCGTGGGGATGAACCG # Left flank : GCTGGTCACGTCGGATCAGGGAAGCATTCGGCTCGATTTCCATGATGGTCTCGCCCCCATCGCCATCGGCGCTGGCCAGGAAGTCGTCATGACGCCGGAGCTCGATGCCCGCGTGGCGGTGGAGAGCGCCGATGCCAGTGCACTGGATGTCGACCTTGAGGCCCTGCTGGCGGCGATCGACGACGATGATGGCGATCTTCTCGAACTGCTCGACCCGACGGCGGCAGGCGGCGCAGCCGGTGGCGGTGACGAGGGTGGTCACAGCTTCGTGCGTCTGGCCCGCATCAGCGAGGGGGTCGATCCGCTGGCATACGAATTCGGCTCGCCACAGGGGGATGAGCTGATTACTTCTCGAGGTGAGCCTGCGCCAGCAGATGAAGCCGAGGAGGAGGATGGCGAACTTCCGGAAGAACCGGAAGAACCGGAAGAACCGGAAGAACCGGAAGAACCGGAAGAACCGGAAGAACGGCGAGGAGTAGAGCCAATGTCGACCCTTCCCA # Right flank : GGATGGCTGTACCATGGGTGCGGGCGACCACCCCAAGCGCGGGGTTCGCTGCCACCCAGACAGCTCAGGCAGGAGTTCGCTGTCGCCCGGCCAAGCCCAACGACAGCAAACAAGTGGCCTATCTCGTGAGATAAGCCACGTCATTACTTAGAACCTTAGAAAGATTCCCACTCGTCGGCCTGGGTGGTCGGCAGCTTGCGCTTTGCGATAGCGGGCGCTGGAGTCTGGGGAAGCTGCTGTGCGCTGCGTGGGCGCGAGGACTGGCTGGCTAGTGTGGCAAGGTCGTCGGCACCAAGGGTGAAGGTGGCCATCAGCTTTTCGAGTTGCCCGGCCTGGTGGCGCATCTCTTCGGACGCCGCGCTGGACTGCTCGACCACGGCGGCGTTCTGCTGGGTCATGGTATCAAGCTCGGTCACGGCGGTGTTGATCTGCAGGATACCGTCGCTCTGCTCCTTGGCGCCGGCACTGATCTCGCCAATCATGTCGCTGACGCGTTCGAC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3732462-3729686 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053025.1 Halomonas sp. PA5 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3732461 29 100.0 32 ............................. TCCCAAGACTGGGCGACCGGCGAGGGCGTGAT 3732400 29 100.0 32 ............................. GACGATCCCGGCACATGGACGTGCCTCTACCT 3732339 29 100.0 32 ............................. TTCCTGCATTTGACCAGCCGTCGCCCGGCTAA 3732278 29 100.0 32 ............................. CCCGCTTATCGATGGCAGTCGAGAGCGGGCCA 3732217 29 100.0 32 ............................. TTCAATGTTTCCGTCATGCCCGACAGAGTATG 3732156 29 100.0 32 ............................. GGAATCGAGTCATCGAACTCCTCGTAAGCAGG 3732095 29 100.0 32 ............................. TTGATCTGGCCAGTGACCTTCTGCCCTGACTC 3732034 29 100.0 32 ............................. AGTTGAGCAGATCGCTTATGCGAGTGGACAAA 3731973 29 100.0 32 ............................. ATCGTGCACGGCTTGGAGTGTGGCCAGGTCAT 3731912 29 100.0 32 ............................. CTTGGTACTGGTCATCCACCTTCACCCCGGCC 3731851 29 100.0 32 ............................. CCGATTGTGCTCACGGCGGCATGGATGGTGGT 3731790 29 100.0 32 ............................. GCATGAGCGATCACAAGCGCTGCAAATGCGGC 3731729 29 100.0 32 ............................. CTCGTGTCGAGCAACTGGATACAGGACGGCTG 3731668 29 100.0 32 ............................. TCATACAACTCGACCTTGCCCGGTTGCGGGCT 3731607 29 100.0 32 ............................. AGATGCTAGCCGATGCGGCAGAGCTCCAATCC 3731546 29 100.0 32 ............................. CATCTGCTCGCGAGCTTGAGACGCGCGCAGCT 3731485 29 100.0 32 ............................. CCCTAACCGCCGAGCTATTGGAGTTTGCCAAA 3731424 29 100.0 32 ............................. CTGCTGGCCGTCTACAACACCGGCTTTGGCGA 3731363 29 100.0 32 ............................. TAGACGCTATCCCATCAGAGGCGGCAAACGCC 3731302 29 100.0 32 ............................. TCCTCGCTGCTGGGCGGCGCTGCCAGGCATGC 3731241 29 100.0 32 ............................. TTGGAGTATGCACACAGAATTTCATTTGAAAT 3731180 29 100.0 32 ............................. CGGAGGAAATCGTACTGGATGTAGAGGATGGG 3731119 29 100.0 32 ............................. TTCTCGAAACCTTCGGAGTTAAGGTAGCGTTT 3731058 29 100.0 32 ............................. CCGACTCAGAAGCGCTTTCAGCGGCTTCAATT 3730997 29 100.0 32 ............................. TTTCAAAGGTCTACGTGATTCCATGTGTGGAT 3730936 29 100.0 32 ............................. CAGCGGCGTTTGTTGCTGTAACCCCATTTCTA 3730875 29 100.0 32 ............................. CCACACCACCACCGAAGGAGCAGCACAGATGA 3730814 29 100.0 33 ............................. GTGAAGAGCACACCTACTTTACCATCTATCATG 3730752 29 100.0 32 ............................. AACAGCATTTGATTGATGCTGCACAGGTTGAC 3730691 29 100.0 32 ............................. AGGACACCATGACCAAGATCATCAGCTTCGCC 3730630 29 100.0 32 ............................. GCTACACGTACCGGGAAGACACCGACGAAAAC 3730569 29 100.0 32 ............................. CCGTTGAGTCCTTCGCAGCCGGCGGAGCCCCC 3730508 29 100.0 32 ............................. GCCATCCAGAGGACTCTCGGGATACTGGAACC 3730447 29 100.0 32 ............................. CCCGCTGCGTGCGGGCACATTTCGAATACTAT 3730386 29 96.6 33 ............................A ATTAGTGTCGCAAATGTCGCGCACGCTTGCTGC 3730324 29 100.0 32 ............................. GAGACGCAGGCATGAATAAATCCGGACACGGT 3730263 29 100.0 32 ............................. ATAGTACCAACGCAGCCGCGTACAATACGAAA 3730202 29 100.0 32 ............................. ATGCGGCACGTAGCGGCATTAGTCACGCGGAG 3730141 29 100.0 32 ............................. TTAATAACATGAGGAAGACCCTGACTATCACT 3730080 29 100.0 32 ............................. CATACTGACTATGAGGGTCACTGGCCTCTTCG 3730019 29 100.0 32 ............................. GCTGGCTTGGCAGGTGGTATTCAATCAAAGGA 3729958 29 100.0 32 ............................. GCTGCTATAGCAACTCTCACCGGGAACTCAAT 3729897 29 100.0 32 ............................. CCTGGGGGCCATGGCTGGTTGGTCTTAGTGAT 3729836 29 100.0 32 ............................. GGAGATGACCAGTGGAGCATAGATCACACGAG 3729775 29 100.0 32 ............................. CCTTGCTCCATTGCAACGTAACCTTGGTAACT 3729714 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.9 32 CCGTTCCCCACAGGCGTGGGGATGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGTTGCCGGTAGGCTGCATCACATCGCTCGA # Right flank : GCGAGGAGTAGAGCCAATGTCGACCCTTCCCACCCTGCTGCACGTCATGTCGTACATCGTCGTAGCGCTGCTGCACGTCATGTCGTACATCGTCGTATCGCGCCTGCAGGGATGAGGTAAGTCTGCTGCTCAGCATGGTAGACCTCCATGGTCATGTTGATTGTTATTCCCTGCATTCGATCAACCTAGCCCAGCGTAGCGGCGTACGCCAGCAATACCATTGGCTGAGAGAGGGTGAGAAGGCACTATATTTGTGCGGTAGCACGCGTGATCATGGTGCAATTAACTGTCCATAACGTGAAACGCTTCTACAGGCCTCTTCAAATGCCGCTGTATCAGGCGCATGGGCAGCTTGGCACGCCACGTGCTAGGTTCACCATAATCACGCAATATGGGAGTGCGTCATGCCGTCCACCGCTTCACCGCCACGCCTGGTCTTCACCGACCTCGACGGCTCGCTGCTCGACCACGACACCTACAGCTGGGCGCCGGCCAGGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //