Array 1 19383-20910 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLUN01000013.1 Pseudomonas aeruginosa strain WH-SGI-V-07290 WH-SGI-V-07290_contig20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19383 28 100.0 32 ............................ ATCGAGTTCGTCCGCCTCCGAACCCATCAGTT 19443 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 19503 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 19563 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 19623 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 19683 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 19743 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 19803 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 19863 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 19923 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 19983 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 20043 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 20103 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 20163 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 20223 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 20283 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 20343 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 20403 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 20463 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 20523 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 20583 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 20643 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 20703 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 20763 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 20823 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 20883 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30183-29435 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLUN01000013.1 Pseudomonas aeruginosa strain WH-SGI-V-07290 WH-SGI-V-07290_contig20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30182 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 30122 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 30062 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 30002 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 29942 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 29882 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 29822 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 29762 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 29702 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 29642 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 29582 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 29522 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 29462 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //