Array 1 2689614-2688383 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI530624.1 Escherichia coli UMEA 3336-1 addSZ-supercont1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2689613 29 100.0 32 ............................. GTGCCAGCCGCGGCAACGGACGAGCCGGTCGC 2689552 29 100.0 32 ............................. GCACGCTTACGCGCTCAGTTGAAGTGGGGGCG 2689491 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 2689430 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 2689369 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 2689308 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 2689247 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 2689186 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 2689125 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 2689064 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 2689003 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 2688942 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 2688881 29 100.0 15 ............................. NNNNNNNNNNTCCGT Deletion [2688838] 2688837 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 2688776 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 2688715 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 2688655 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 2688594 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 2688533 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 2688472 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 2688411 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2716496-2715796 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI530624.1 Escherichia coli UMEA 3336-1 addSZ-supercont1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2716495 29 100.0 32 ............................. TTATTGGGCTTGTTCGGCGCGGGTTGTTAACT 2716434 29 100.0 32 ............................. TCAACCAGCCTGCTGCGCCTGCGGCACCTTGA 2716373 29 96.6 32 ............................T TTTTTTACGCTCCGGGTGGCGCATATTATCGA 2716312 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 2716251 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 2716190 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 2716129 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 2716068 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 2716007 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 2715946 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 2715885 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 2715824 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCTNNNNNNNNNNNNNNNNNNNNGTGAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCTCTTTCTCAGTCATCTGGCGCTCAACGCCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTCCCTGTCAGTTGTAATCGATAACGTTGATGTGTTCCCCGCGCCAGCGGGGATAAACCGATGTAGGGGCAATCGAACGATTCTCTGCCGACGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGAAGAAGAAAGGGAAATAATGCGAGGAACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTATTACGCGCCAGCAATGCTGACAGCGGCAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCGAGAGCCAGCAAAACGCCAGGGCACAAAAGAGTTCCCCGCGCCAGCGGGGATAAACCACCATATAACCCGTTATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //