Array 1 833602-831066 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGJE01000002.1 Helicobacter muridarum strain NCTC12714, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 833601 36 100.0 30 .................................... TCTCCTCCCTCTACTACAATGCCCAATGAG 833535 36 100.0 30 .................................... AAAACCAAATAATGTTACAAATCCCTACGA 833469 36 100.0 30 .................................... TTAATCCTGCGATAGAGTTCAAAAAAGGGG 833403 36 100.0 31 .................................... TAACAATTTGATTTTATCAGCTAATAAAGAT 833336 36 100.0 30 .................................... GATTGAACGCTATAGTTATCACTAAACCAA 833270 36 100.0 30 .................................... TTTCCATCTAATTTTAATGCTGCGCTTAGT 833204 36 100.0 30 .................................... AGACTAGAAACCTTAGGAGCTGTAGAGATA 833138 36 100.0 30 .................................... TTAGGGATTAATGAAGCCGAAAAGGCACTA 833072 36 100.0 30 .................................... AGACTAGAAACCTTAGGAGCTGTAGAGATA 833006 36 100.0 29 .................................... AATATTACATATTCGAGTCGCGGTTCTGT 832941 36 100.0 30 .................................... AGACTAGAAACCTTAGGAGCTGTAGAGATA 832875 36 100.0 30 .................................... TTAGGGATTAATGAAGCCGAAAAGGCACTA 832809 36 100.0 30 .................................... TGATGAATTCGACAAACTATCGGATGCATT 832743 36 100.0 30 .................................... CATCAAATAGTGCTGCTAAAGATGAATATG 832677 36 100.0 30 .................................... TCTACAGCATCGCCTACTAAATGACGAGAT 832611 36 100.0 30 .................................... TCTTGATTGACGCGTAGCATTTGTTTTAAT 832545 36 100.0 30 .................................... ATCTAGTTTTCTTTTTTACGCAGAATGCAG 832479 36 100.0 29 .................................... TTTACCTGCCATAAGATTTATGGATTCTG 832414 36 100.0 30 .................................... TTAGGGATTAATGAAGCCGAAAAGGCACTA 832348 36 100.0 29 .................................... TATACTCACCGACAGTATAAGAAAGAGTC 832283 36 100.0 31 .................................... TATTATTTCGATGACTTCATTGACTACGAGT 832216 36 100.0 30 .................................... AAATTTAAACGCAGATTTTGTTTTGAATTT 832150 36 100.0 29 .................................... ACCAACAGGAAGTAATAAGTTCCCTATGC 832085 36 100.0 30 .................................... AATTCCGCGCTTTTTAGCTTCTGCTTCCAA 832019 36 100.0 30 .................................... TGCGAATTAATGAAGTCTTACAAACTGCTG 831953 36 100.0 29 .................................... GATCCGAAATAACTAAACCCGTGACTCCA 831888 36 100.0 30 .................................... TATGAAAGAATATAGTAATGTTGGTATGCA 831822 36 100.0 30 .................................... TGTTCAAAGGTTTCAGGTATGTGGGAGTCT 831756 36 100.0 29 .................................... TACGCAAAGAACAGTATTATTATGTGGAG 831691 36 100.0 30 .................................... TATCGTTTGCAGCTCCCCGAATATCTCGGT 831625 36 100.0 30 .................................... AAATTATTCCATATCATGTTGTAAGCACGG 831559 36 100.0 30 .................................... AATCCAATCGCAAACCAAGGAATATGAAGT 831493 36 100.0 29 .................................... TACGCAAAGAACAGTATTATTATGTGGAG 831428 36 100.0 30 .................................... TAAGAAGCGTAAGATGGAGACGAGACGCGA 831362 36 100.0 30 .................................... TGGCTCTTTACGGGGGAGACCACATTATCA 831296 36 100.0 29 .................................... CACCGCCGCCGATAAGTGCGCTTGTGATG 831231 36 100.0 29 .................................... TTCTCTTTATACCCTGCGTATACATAGTT 831166 36 100.0 29 .................................... TACTATATCTGCGGCGAATATGGTTCACT 831101 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 39 36 100.0 30 GTTTTAGCCACTTATTAAATCATTCTATGCTAAAAT # Left flank : ATAGTCAAAACCCCAATGATGTTTAAAATTGCTCAAGATGTAGCAAACGCGGCAGGAAAACCTTTTGAGTGGGGAATGGAGCAATATGCAAAACATATTACATTAAAGCGACTAAGTGAACCTGAAGATGTAGCAAACGTAGTAGCATTTCTAGCTAGTCCAGATTCAGATTATATTACAGGTCAAGCGATAGTAGTTGATGGAGGTATGTATTTCAATTAAGAAATTGATAAATTTATACTCTTAGTAGTAGATGATTAGGATAACGGATTTTTCTTTAAAATCTTGATATAGAAATTACATAAAACTGTTATAAGGTTGTTGCTAGCTTTTTACTAGCAATGGATTTATTAAGCTTCAAATAAAAACTCTTAATTTATTAAGAAATAAACTTAGCATCTTAGTTATGAAGAAGCTAAAAATGAATTAGTTACATTAACCTGATGATTATAATAAAGTTTTAAGATAATTAATTTAGATTAAATATATTAAAGTTAGCT # Right flank : ACACTACCTTGAAACTGCGTATTTTAGGATATTTGATAAGTTTTAATAACACTAAATACTATAAAATATTTAGTGTTATTGATAAAATTTGGGATATAATTCAAAAATGGTTTAATAAGTGGCTAAAATAAGGGAGTTCAGGATCTCCCGCAGGGTTACAATCCCTAACAAAATCCTATTTTTACTTTAAGCTTAAATATTGGTTTATATCATGCTAAGAGTAAATTCTACATAAAAATCATAATATCAATATTTTTTACTTTATTTAAGTCACGTTGATATATCTGCCTTTAATATATTTCTTAATCTATACAAAGATTCAAAAATATACGTAATTAATCACAAGTCATATTAAAAAAGCGTAAGCTCCTTTGGCTTATTTGCCTGTTCATTATTGCTTATCTTACCAAGCAAAAGTCTCATGTTATCAAATTGCTTCTCTGTGAGTATTAATGCCCTTACATGCCCTCTTGGCGGCAAGAATAAACTAACTCTATCAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCCACTTATTAAATCATTCTATGCTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //