Array 1 39246-39888 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042327.1 Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 39246 36 100.0 40 .................................... CCGTAGGACAAGGGTTGAGGTATGTATAGGTTAGGATGGG 39322 36 100.0 45 .................................... CTGAATGTACATATTGGTCTCCTTTGATTATTAATGGTCAACTAG 39403 36 100.0 40 .................................... CCCCGTGCTAGAAGTCGGTTTAACTGGGACTCAGACAGGA 39479 36 100.0 38 .................................... TTGACTTTAGGTTTATCCCCTTGAAAGACGTTGATAAA 39553 36 100.0 37 .................................... AAATGTCAGACATAGTGTCCTCCGATTGAATTCATCA 39626 36 100.0 39 .................................... TTGTGCTTGCATTTTAAGTGACCTCGAATTCGTCACTTA 39701 36 100.0 39 .................................... TGGTAAATGGAAAGATAATAACACTTCTCTAAAGAAGAA 39776 36 100.0 42 .................................... TAGAGGGACACTACATAGGAGGAATTAAAACTTGAGAGAGTT 39854 35 91.7 0 .............................-AA.... | ========== ====== ====== ====== ==================================== ============================================= ================== 9 36 99.1 40 GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC # Left flank : ACCCCCTATGAGATTCAATAGTTGATGCAATTATACGTCGTTACTTACGATATCCCATGCGATAAACGGCGTAAGAAAGTTGCAGAGTTATTGGAGGGTTATGGTCAACGGGTACAATTATCGGTGTTTGAATGTTGTCTGGAAAAACAGAAGTACGAAGCCCTAAAAAAAAGATTGCAAAAACTGGTAAAACTTGATGAAGATAGTGTCCGCTTTTACCCTCTATCTGCTCATAGTTTGTCCCAAGTGGAAATTTGGGGTGGGGTTCCTCTTTCTCAACCGCCTGGGTCAACTATCATTTGATTATCATTCTCAGTTTAGGCGATCGCCTCTGGAAATTGCTGTAATACCGATCCTTTCGTTTACCCGCTCGGTCGCCCACTATTAGGAAGTTCTAGCGATTTAAACTATTTTTCTTTTATGGCAAATAAATTATTTCGCACCCCCCCCTCGGAAATGGCACTTGCAATCCAGTCAGAGTGGGGGCTAAAATTAGAGGG # Right flank : CCGCCCCTGTTAATTAGAGGCGGTTGCTTTACTCGAAAGCGATAAGTTGAAATTTAAGGAAGCAGTTTAATTGTCGGAAGCATCAGTCATCAGTAGCGCGATCGCGCTTTCTTTCGTATTAGAATAAATGTAATAATGGTTATTTTCTACAAACTCCTGACGATAATTGCGATTCAAAGCAACTAAAGGATTCTTCAGAATTTCCGTCAAAATGGGAATAATATCATCATAAGTACAGGCTTCTTGAGGTCGATCGCGATTAAAATCCTTAATACGCACCTGAGAAAGTCCTTCTGCATTATGGACTAAATCATTCCGTTTCTCAATCCAATAATCAAGGGCTTTGAAAAGTCCTAAAATGCCGTTAAAGGTTCTCCCACTAAACTGAAATTGATGCTGGTTCCAGTTATCTAAATCAGACTGTAAATTAGAGTTAGTTTGGGCGCGATGTTTAATTAGAATATCAAGATAGTTGCATTTACTATACCGACTAAACTTAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 52227-53166 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042327.1 Euhalothece natronophila Z-M001 plasmid pEu1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================= ================== 52227 36 100.0 35 .................................... TCCTTTCTCCAGTAATTGGAAGCCTTCTGTCTGAA 52298 36 100.0 35 .................................... TTCTAGAACAGTACCAAACTCATCATCGCTCCAAT 52369 36 100.0 35 .................................... ACATATCTGACGTTGTAGATTGATGCAGGGACTCG 52440 36 100.0 37 .................................... AAGAGGTCTTCTGTTCCAGCCTCTTTGTGAGCTTTTA 52513 36 100.0 37 .................................... TTCTTTGGGATTTAGACTTGTGTTCTTTTTCAGTCGC 52586 36 100.0 38 .................................... CTGAATTTGGCAATGAAGTCACCAGACCGCTCTGGCTT 52660 36 100.0 38 .................................... CTTAGAAGACCCTAAGGAGAATGGCTTAGCTCCCTTTA 52734 36 100.0 44 .................................... TTCTTAGCTTCCTGATTAACTTTATTTACATCAGCATTGTTGTA 52814 36 100.0 42 .................................... ATCCTTAGTCAACCCATCAGGGGCATTAATCCGACTACCGCT 52892 36 100.0 37 .................................... AGGTTTACGCGATTAGTTAGCTTGATGAAATCTTTCA 52965 36 97.2 37 ...............A.................... TACATCTGTGTGTTAGGCTTGCTAGACTTAATATAAT 53038 36 100.0 57 .................................... CCCCTAACGAGCACCAGACTCGATTTACAGGGGCGAGGACTACTTCCTCATCCTTCT 53131 36 86.1 0 .......T.......................CC.CT | ========== ====== ====== ====== ==================================== ========================================================= ================== 13 36 98.7 39 GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC # Left flank : AACTTTGTTTAGCTTGAAGACAACCAATGATCCCAATTTCCCTAATCGTTATCAAGTGAAATTGCCCTGTTGGTGTGTTGACGATTATGATTTTCATCGCTGGATTTTAGGTTTTGGTGGACAAGTTAAAGTAATGAGTCCAGACTCCCTGAAAACAATTATTCAAGAAAAAGGAACTGCGATTGCCCAACTTTATAACCAGGAATAACAAAACGTTTTCTCATTTCCTCGGTTTTCCAGAGTATGCCAAAACCCAAGTCGATCTCGCCCGTACTTTGGTCACAGTTTATGGGAGAGATGAAGTGGATTGCTTAACCCTTTTTCTGATCGCCTCGCCAAATCGCTGTAATACCGATTCTCTCGTTGACCCGCTCGGTTGCCCACTATCAAGGATTTCTAGCGATTTAAACCATTTTTATCTTATAGCAAAAAAATTATTTCGCACCCCCCTCGGAAATGGCACTTGCAATCCAGTCACAGTGGGGGCTAAAATTAGAGGG # Right flank : TCTGGGCATCTTCTCCCTTGTTCCCGTGCAACCTTGAATGCACGTCATACCGATTGCCTATTATCCCAATCAGGGGGATATGACAGTAAAATTCACGAATCGTTGCCATTCCCCGAAATGAGATCACGAACCGAAAAAAATGCTTTCAAGAGTACCTTCACATAGCCACCCCAACGATGCTTCTTAGTCGCCAATGGCTTGAATTTAGACTGTTGCATTGAGTTGAAATAATTATAATCTGCGGTTTTCCATCAAACCCATTAACTTGCGTTTGCGACCATGAGCTTTCACTAATTCTTCTCGATATCGAAGCCATTCCGATTCTTGGTTCATTGCCAAATAAGCAGCGTGGACTCGTTTTAACCACTGCACAGCCAACTCGTATAATTTAGCGTGAGAACGTTCAATAATGGATTCAGCACGGGCTTTGGCATCATCAATGACCCATTGGCTATGACTTTCGAGAACCTGATCCATTACTTTGAAAATGAGTTGCGTAT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCCCTACGGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 535190-534434 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042326.1 Euhalothece natronophila Z-M001 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 535189 36 100.0 37 .................................... CTACCATAAAGCGGTATTCCCGCTCCACGAACTGGTA 535116 36 100.0 34 .................................... TAGAGAGCCTCTACCAGCTCTGAATCAGCCTCTG 535046 36 100.0 34 .................................... TTCCTGAGAATTATCAAGAAGATGTTTTAGATAT 534976 36 100.0 36 .................................... CCAATGTTTCCAAGTTGTTTGGACTTATCATTACAT 534904 36 97.2 36 ................G................... TTATAAAAGACGGCGATCCAGTTGTAATCATCAATC 534832 36 97.2 35 ................A................... GGCTCAATGGCAAAGTCAACCACTTCGATTCGGAG 534761 36 94.4 36 T...............G................... ACTAACCATTCGGGTAACACATTTTTTTCTGTTATG 534689 36 94.4 36 T...............G................... GTACGCGATAGCACGGTATGCCCTAACAATTGCCGA 534617 36 97.2 34 ................A................... TGAGGGAGTGGGCTTGTTCCTGCATAGGCAGGCA 534547 36 97.2 42 ................A................... CGGACACGGTCAATGCCCTTATTACCTCCTTTATCGGAGAGG 534469 36 91.7 0 ...TT.........................A..... | ========== ====== ====== ====== ==================================== ========================================== ================== 11 36 97.2 36 GTCCCGGCGACTGGGTTAAGTCGCTTTGTTGGAAAC # Left flank : GAAAGTAACCGCCGTGTATCGAATTTCACTCATTGTCAAGTGCTAGCGTTCTGTTCTCACTTTAATTTACAAGCAATCTGTTAGAAAAACTAGGCTTGGGATGCGATTGACGACATTTATAATAGCCATCATTAATCATATATTTTAATTTAGCAGAAGGGCTGAGAATCCTACGACTACAATTTTAATTTAGTCGGTAGACGGGGCGTATAAACATCTGGGGAGACCCCAGATGACAGCCCCTCATGAATCAGCCTATTTGCGGTATAATCAAACAAGTAGGCTTAATAACCAAGTGCTCATCGCCACCTACTTACTTATACAGAATTAACTTCTGAAACCTTCGACCGATGGGCAAGCGGAAGAAGTAAAAGCAGCTCAGTTAACGTTGATTCGCTCAAGTCGCTGAGAAGCCCCAACTACATCGAAAGATTAGTTGAGGGTATGTCACCGCAAATCGCTCTTGAAATTCCCTCACAGTAAGGGTTATGATGAGTGGT # Right flank : GCTCAGGTGTGGAACAATTGACACTTGAGCGTTTTTCTGTGACATTTTCCTGACATAAAATCGAATAACTAATGCTACAGATGAGCAATCGCCTCCCCTTGTCTCCCCATCTCCCTCTCTCCCCATCTCCCTCTCTCCCTCACAGTAAGGGCTAACATAAAGACAGTCCCAGCAACTGGGTTAACCTGATAACCAATAACCGAAAACGCCCCATTTCGATTACGATTGATCAGGGGTTACTTATGTCAGGGATAAACCAAGAATGTACTCATTATTAGAACAACTGCGACAACACTTTTCTCAAGCCCTAGTCAACGCATTTGGCGAGGAATACGCCGATACTGATCCTTTAGTGACACTGGCGGCTAAACCCGAATTTGGGGATTATCAGTCTAATATTGCCCTTTCTCTTGCAAAACCCCTGAAACAAAAGCCCCGCGATACCGCCCAGCAAATTATTGATCACCTTGATCTATCTGAATTATGTGAACCCCCCGAAA # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGGCGACTGGGTTAAGTCGCTTTGTTGGAAAC # Alternate repeat : GTCCCGGCGACTGGGTAAAGTCGCTTTGTTGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 543091-543352 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042326.1 Euhalothece natronophila Z-M001 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 543091 36 100.0 46 .................................... GTTACTCAGATTGAGGTGTTCCTAGGGCGAGAGGAACAGCTCTATT 543173 36 100.0 35 .................................... AACGAGGCTTACAGCCGCCTCGGTTGTTCACTGAA 543244 36 100.0 37 .................................... TTGTTAAGTCCCGTAACTATTGGGCTGCCCGCGTCAG 543317 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 4 36 100.0 40 GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC # Left flank : AAGTTATTAAAAAGTAAGACTGATCCCAATGACATTATTGCTAAAAAATCAGCTCAATATTTTGAGTTGCTTACCTTTTTCCCCAGTGCTTCTCCTGATGACAAAGAGAAGGAGTTTCGCAAGTTTCTAGAATCGGAACAAGAAATGTTTAATAAGTTATGGGGAAATTAAAGTTTTTCTAAATGGTTATTGAGGGTTGATCCCCCCTAGCCCCCCTTAAAAAAGGGGGGAATTAGCGTTTTTCTAAATGGTTAAATCCTTTTTATTTGAGGGTTGATCCCCCCTAGCCCCCCTTAAAAAAGGGGGGAATTAGCGTTTTTCTAAACAGTTAAATCTTTTTTTTTGAGGGTTGATCCCCCCTAGCCCCCCCTTAAAAAAAGGGGGAAATTAGCGTTTTTCTAAACAGTTAAATCTTTTTTATTTGAGGGTGAAATATTGAAGTTTTGCCCTCTTTTTTGATGGAACAACGCTCAAGCAGTTTGCACTTGAGCATTTTTAGT # Right flank : CTGTCTTTATATTAGCCCCTGCTGTGAGGGAATTTCAAGAGCCATTTGCGAGGGGGTCTTTAATTTCATTTATTTGCCATGAGATGAAAACAAGAAAAATGGCTATAACCCTCTCCTAGAGGAGAGTCGAGGGGGTCAACGAAAGAATGAGGATTTCAGCGATTTGCCGACCCCCGCGCAATTACTTTGTACCAAAAGAAAAATAGGGAGATGGGGAGGTAGGGAGATGGGGTGATCGGCAGACAAAACCCTTTTCCAGCTTGCTTTTTGCTCATTCTAGACTTTAGAAAAGGAAAGCAATTTAAAGTCATCTGCAACTTTATTAATCATGGTATTTTTAGTAACTCGTAATTGATTGTGGTTGAGTTTAAGCAATGGCTACCCAACCAACAATGATGAATTATTGCAGAATTAACTGCTGACGATGAGCATGATTTAACTGTAAGTCTAACCCAGTTACTTGTTCCAACATATAGACAAAGTGTTCTGGGTTCAGAAGT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACAAAGCGACTTAACCCAGTCGCCGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 3 708332-708154 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042326.1 Euhalothece natronophila Z-M001 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 708331 37 100.0 34 ..................................... GAAAACCTATACTATCTTACGGATTATCCTCTTA 708260 37 100.0 33 ..................................... TGCATTTCATTAAAAATGGAAATAAAGATTGGG 708190 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 3 37 100.0 34 GTTGCAATAAGGTTTTGCCCTTAAGATTGATTGAAAG # Left flank : AATTATTAAAATCCTTGTTTTCTTCTGAACCTTGACAATACAATAAAATTATTAATCGCGCCGCAGGTCATGCTTAACTTTAAGCCTCTGAACTGCGAAAAATGTGGGTTAGTTTGCCTGCTAGAAGTAGGTGTGCTTTCTGACCCTAGTCGCCGTCCACCCTGATGCTGATTTCTACTTTTGAGTAGGGATGATTAACTGATCAATTTCGATCGGGTCGGTGCGCTCCCAGCAAAAAGGGCGCGGGCTAACTGCTGTGACAGCGACTGAACCACCTCCGAGCAAGGGGGAATCACCTTGAGGACTTGGTTTGAGGCTTTTTGAACCAAGAGAATTTTCTAGAGGGATTCGCGCACTTTCTTTATGTCTTCACTGACGGGCGTTTCAGCCTTTTTGATTAATAATCTCTAGTATTTCTTTGACCAGAGAATTCAGTTTTAGTTGAGACTCGCGCAAACTGCCTTTAGAACCCTTGTGTGACAGTGCTTTTGAAAGGCGCG # Right flank : ATAATCCTTCCTAAGGCATTTATATGAAATATAAATCTATATAAATCTATATAAATCTAATCGCGCCGTTGGTCATGCTCAAGTTTGAGCCTCTGAACTGTGAAAAATTTGGGTTAGTTTATCTACTAGAAGTAGGTGTGCTTTCTGACCCTAGTAGCGATTCACCCTGATGCTGATTTCTGCCAATTTTGTAGAAATGATTAACTCGTAAAAGAATAGGTCTTGTACTTTGATCTTACGAGGTAGGTGCGCTCCCAGCAATAGGGGGATGGGCTAATCATAGAATAGCTACTGAATCACCTTCGAGCAAGAAGGAATCCATCAATTAAAATTAGAGATGGATTGAAAGAGGTCACGAGTTCAAGTTTAGCTTTTAGGTTTCGACTAGCTATTGCAACGGGAGAGAGATTAAAAATTTCTTTGATAACCGGTTAAAATAGTCGAAACTCTATTGTAAAGCTAATTTTTCAAGACTAGCGATCTAACGACAATTTTAGTAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGGTTTTGCCCTTAAGATTGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 4 1789079-1788826 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042326.1 Euhalothece natronophila Z-M001 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 1789078 38 100.0 33 ...................................... ATAAGAATGCGCCCAAGGCACAGCCAAGACAAG 1789007 38 100.0 33 ...................................... TACTCCACAATTTGAGATAGCTTTTTTCAGTTT 1788936 38 100.0 35 ...................................... GAGCTAAACTGGAAAACGCACTCAATTCCAGCTTC 1788863 38 97.4 0 .....................................G | ========== ====== ====== ====== ====================================== =================================== ================== 4 38 99.3 34 GTTTCAATAACCAATAATCCCTATGAGGGATTGAAACA # Left flank : AATATTTGGATGCTGTCATAGGGGAGAATCTTCTCAGGAAGGAGTAATAATTCTTCAGGGCTGAGATTTTGCCATCCCATCCCTTGCAGAAAGTCGGCGGTTAAGTCTGGGGGATGAAACCCCGGGACAATTATGATCATGTATCAAAGATGCCTGAAAAGTTAAAATATAACGAATAAGTACAGATTAGGCAAAGTAAACTTCTCCCACTAACCTCACGTTTGACGCATAGAGGAAGTTTCCGTTTATCGGACATTTTTCTTTGCCTAGAGGATTGCGCGAATGGGTAGCTGTGTAATGTGAAGTCATTCCGCATTAGCTGAAACCCTTATTTAATCTTGGTTTGAGTCCTTAACTTCAAATAACCATTCGCGCACCAGTCACAGCAAGGATTTTGGCGATTTTGGGTTGCTTTTTATGATCAGTTTTGTTAGTATGAAAGGGCATTCGCGCAAACGCACCTTGAAAATCAAATATAGTAAGGGTTCTAAGTGCCTGCG # Right flank : AGCGCGATCGCGCCCCTCTGCTCTCTATACTTATTGAGAATTGAGCTCAAATAAGCAGAAACGAGTTAACGTCGTTCTTTTAACAAGGTGTGAGAGAGATAATCAAAAATTATCCAAGAAGTATATTTAGGAAGATACACAAAACGGATACGATGGCTTGGGTCGCTGAGAAAACAGTGAGAACAGTTAGGGCGGTTAAGATAGTTAAAGGCGATCGCTTTTGTCGAACGAACATAGCTAAATAAGCTATTGGTAGTAGTATTGTGACGGAACGCACTAACAGATCATCATGGAATCCCTCACTTTAAATGTACCTCCAGCAGTTGGTTTAACCGATGAGCAATTTTATCAACTCTGCATTGCTAATGAACCCTGGCAATTAGAACTTACGCAAGCTGGAGAATTAGTTATTATGTCTCCTACAGGCGGAGAAAGCGGAATCAGAAATTCTAATTTAACTACAGATTTAAACTTATGGAACCGTCAAGCCAAGTTAGGAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATAACCAATAATCCCTATGAGGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //