Array 1 425999-426636 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMLM01000002.1 Klebsiella pneumoniae strain KP131_H NODE_2_length_570379_cov_24.122804_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 425999 28 100.0 33 ............................ TTACGATGCGATCCCGCATCTTACCCGCTCTCA 426060 28 100.0 33 ............................ TCCGGCAGCGGACAGGGGCAAGCCGGGCGCCCA 426121 28 100.0 33 ............................ TGCCATTCGCGGGACTGACGGCGGCGCGCTGCG 426182 28 100.0 33 ............................ CCTGTTTAACCAGTGCCTGGCGGGAGTAAGAAA 426243 28 100.0 33 ............................ TCGCACAGGCGCAAATCGACTGGATTAAAGAAA 426304 28 100.0 33 ............................ TATCCCTGATTACCAGGAGAAAGAGGATGCATT 426365 28 96.4 33 .......................A.... TCAGGATGATTACCCTGGCCTGGGTGATTGGTG 426426 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 426487 28 96.4 33 ............C............... CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 426548 28 96.4 33 ..............T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 426609 28 92.9 0 ....................A......T | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTAACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTACGCGAAGCCACGGAAGGCAAGCGTCAAGACGTCGCGCTATATTCTGGGGATGACAAAAGCGTTTTGCGCCTGGCTGCGGGGCGGGCAGGCCAGTAGGGTAGACCGGCCCAGGTCAGCAGCAAGTCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGTAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTTTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTATTCTTCATATTAATTATCTATGGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 435390-437132 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMLM01000002.1 Klebsiella pneumoniae strain KP131_H NODE_2_length_570379_cov_24.122804_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 435390 28 100.0 33 ............................ CCGAGAAAGAGCAGAAGCAGGAAGGCGCGCCGG 435451 28 100.0 33 ............................ CTGGAGCAGAAGCGCAAAAGCCAGCTGATCGAC 435512 28 100.0 33 ............................ CCGCATTAACCAGTTGCGCTTCATAGCCCAGCG 435573 28 100.0 33 ............................ CACCGAGGTTGGCCGTCAACTTATCGCCGCCGA 435634 28 100.0 33 ............................ CGCCAGCCGATCCGCTCTTGATGTGCTGCATCA 435695 28 100.0 33 ............................ TAGCGGTAAATTCATTAGCGGGGTTGATATCCA 435756 28 100.0 33 ............................ CACGCCATTTGTTAACGTGTATTTTTTCCCGAT 435817 28 100.0 33 ............................ TGGGGTTCTGACGGCTACCGGACGTCGGATGCC 435878 28 100.0 33 ............................ CCATTTTTTGATGGAGTGTCAGAGCCTTGGTAT 435939 28 100.0 33 ............................ TTATTGCGCTGATTGTTTTGTATTTAATAATTT 436000 28 100.0 33 ............................ TCGCCGCCATGTCGGCATTGACGAAAAGCAAGA 436061 28 100.0 33 ............................ CTATGGTCCATCTGGTTGGCAGGCTTCGCAGTG 436122 28 100.0 33 ............................ TGAGGTATCGTTAAGGATGACAGCGCCACCAAA 436183 28 100.0 33 ............................ CCGAGATCCCCGTTTCATTCTGATCCCGAGGTA 436244 28 100.0 33 ............................ TTTATCCCGGGGATTAGTGCCCCCATTAACAGA 436305 28 100.0 33 ............................ CAATCAATCAGCAGGCTTTCTGGTATTGGGGCT 436366 28 100.0 33 ............................ TTGTGGGGCGCGTGGGTATATTCAGGACGACTG 436427 28 100.0 33 ............................ TATGTGCCGCCCCTCTCGCCCGAAGAGGAGCGA 436488 28 100.0 33 ............................ CTCGCACAGCATCGCCCGGACCCGCTTCCACGC 436549 28 100.0 33 ............................ CACCCGCGTTTTCGAAAGGGATGGCGGCTATGT 436610 28 100.0 33 ............................ CGACGGGGCAGGTTTACGTCTACCCGGGCAGGG 436671 28 96.4 33 .G.......................... CATACCAGTCTCCGCCGCGGTCGTACTCAATAT 436732 28 100.0 33 ............................ CCCCATTATAAGTCTGTGCATCAGCAATCGCTG 436793 28 100.0 33 ............................ TTCGTTACGGCGGCGGCACTGATTTTGCAAAAA 436854 28 96.4 33 ..............T............. CATCGCAGAAATGGCGCGCCTGCTGTCGAATAT 436915 28 100.0 33 ............................ TGACGAAATTCACCACCTGACCTGCGACGCTCT 436976 28 100.0 33 ............................ TCCGCCGTTTAATCGCGGTGATGATATCCGGCA 437037 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCGGGCATTCGTTCT 437106 27 85.7 0 ......A...T.T....-.......... | ========== ====== ====== ====== ============================ ========================================= ================== 29 28 99.3 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 108824-107637 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMLM01000010.1 Klebsiella pneumoniae strain KP131_H NODE_10_length_179333_cov_25.357894_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108823 29 100.0 30 ............................. CGTCCAGCAGGGCGCTTTTTATTTGTTAAT 108764 29 93.1 32 .C...T....................... GTGCCGGTTAAACCTACGAGGGAGATTCTCGA G [108760] 108702 29 100.0 32 ............................. GGCAAATCAAGTTGCACCGAGATCGCCGCGCG 108641 29 100.0 32 ............................. TGTTGCAGGGCTGGACCCCCACCCCGGCGAAT 108580 29 100.0 32 ............................. CGGCGCCTCAGCTTCTCGGTCGTTTGGCTAAA 108519 29 100.0 32 ............................. GAAAATTCGAGTAATTTTCGGGGGATTTCGTG 108458 29 100.0 32 ............................. CTGATCCCCTCCAACAACACGCCAGGCACAGC 108397 29 100.0 32 ............................. CAGGCAACTATTGAAAGTTACGGCATCTTACA 108336 29 100.0 32 ............................. CTATGTGCAGGACTTGTTTGGGATGGAAATGC 108275 29 100.0 32 ............................. GTGAGAAACATCTGTGCTGACCTGACAATCGC 108214 29 100.0 32 ............................. CTGCGCAGCGCATTAACCGTATTTTCAGTAAT 108153 29 96.6 32 ...........C................. CCTACGATTTCGGCTTTCAAGAGTTTTTTCTG 108092 29 96.6 32 ........T.................... TCCGTAAATAACGCCAGAATCGGTATCTTTTA 108031 29 100.0 32 ............................. ATGGTTTACGGGCTGTTCGTTTTCGAGCTTTC 107970 29 100.0 32 ............................. CTCAAACCCGTTATCGCGGCAATGATTAAAGA 107909 29 100.0 32 ............................. TTCATTGTTTTCTCCGTATTGAGTGCGGGTAG 107848 29 100.0 32 ............................. CTCCTCCATGGGCGAACTAATGACGACGCTCA 107787 29 100.0 32 ............................. CCAGGCGACCGTATCTGGGTGCGTGAAACGTG 107726 29 100.0 32 ............................. ACTGATATCACCGAACTGGCTCGGGCCATGAA 107665 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGAACCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTATTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGTTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCATCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGTGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //