Array 1 130303-128141 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE978568.1 Peptoniphilus grossensis ph5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 130302 33 100.0 33 ................................. ACTGTACCGCTGCTTGACTTGCCGCCTGGTTTA 130236 33 97.0 33 ................................C ATGCCCTCGTAATAGACTCTGATATTATTATTG 130170 33 97.0 34 ................................A GTCTTTATTAAATCTTGGTTATGATTTAAAAGAT 130103 33 97.0 34 ................................G GATTTCTATCCATTTCAAATGGAACCTTAACTCC 130036 33 100.0 34 ................................. CTATAAAAAGAATTTTTATCAGCTTGTTTAGCAT 129969 33 100.0 37 ................................. GGACTTACTGGGACACCCTTGCCATACTTAAGGTCAA 129899 33 100.0 35 ................................. ACAGCTACCCCTGTAAGTTCTTGCAGTTTCTCTTT 129831 33 100.0 33 ................................. CAGATTGATAAAATGGAAAATCCTCTTTATAGG 129765 33 97.0 33 ................................A GATGGTTTTTGTGCTAAATGTAAAGTTGCAGCC 129699 33 97.0 33 ................................C TTGATTGACTCCCCTATTTGGATTGCCTTTTGT 129633 33 97.0 34 ................................A AAAAATCCCTGGCATAAATATAGTTGCAGTCCCC 129566 33 97.0 35 ................................C TACCAGCTTGTGGCAAAAAAGAAGATGCAGCCAAC 129498 33 97.0 34 ................................A AGGTTAACATATACTATGTTATGTGTTGGGTAAC 129431 33 97.0 33 ................................A TTATAGCTAAAAGCACCCTCGCCGATGGATGTA 129365 33 97.0 34 ................................C ACAGAAAGTGGCGGTGGAGATTACACATCAACAG 129298 33 100.0 33 ................................. CTTGTGCTTTTATGTTTGCCAAAGGTCTTTGTA 129232 33 93.9 34 .........T......................A GCAGAATAATAATTAATAGTAGTAAAGGTAAAAC 129165 33 93.9 33 .........T......................A AAGGTTGATTCTAATATTGCTTTTGAGGATATT 129099 33 93.9 35 .........T......................A AATCCTATTATTCCCGCCATTTTGGTTGTAGGACC 129031 33 93.9 33 .........T......................A GGTATTAACTCATTTAGTTCTTTTGAAAAACTA 128965 33 97.0 34 .........T....................... GTGTATTTGCTTTATTTATACTATTATTTATCTC 128898 33 97.0 36 .........T....................... GAGCCATGTACTAACAATTCTTGACATTTAACCACC 128829 33 100.0 33 ................................. AAACATATCCTTTTCTATGGCATCAGACCCTAA 128763 33 97.0 35 ................................G GTAATGTGATGGGTTATTGTACTCTGTCATCTAAG 128695 33 100.0 37 ................................. GAAATTCATTTAAAGAGGATTTCAACAAGTCACACAA 128625 33 100.0 33 ................................. AAACATATCCTTTTCTATGGCATCAGACCCTAA 128559 33 93.9 35 ..............A.................A TTAGAAAAAGCTATTGATGCAGTAACTTACAGAAC 128491 33 97.0 31 ................................A TCGAATTTAACATTGAATATATAAGTGTCTC 128427 33 100.0 37 ................................. AGGACTGCATCTCTCCAAATCTTTGGCACTTGTCTAA 128357 33 97.0 11 ..........C...................... ACACGGCGAAA Deletion [128314] 128313 32 78.8 33 TG..-..TG....A..................G AACCCAAGCCGCCCTTGTCCAGGCTCTCAAAGT AA,G [128300,128303] 128244 33 93.9 33 ..........C.....................C TATAACTTCTCCGTACTGGTCGTAAACTTCACC GCCCC [128228] 128173 33 87.9 0 .........T..AC.....A............. | ========== ====== ====== ====== ================================= ===================================== ================== 33 33 96.5 33 GTCGCACCCCTCGTGGGTGCGTGGATTGAAATT # Left flank : GCACCCCTCGTGGGTGCGTGGATTGAAATGCATTATCTAGGCATGTATAATTTTTCAAACCTCGTCGCACCCCTCGTGGGTGCGTGGATTGAAATAAATTGGACAATAAACAAATCAGAAAAGGAACAGGTCGCACCCCTCGTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGTGGATTGAAATGCTACGGCTCTTATTACTTTCAACTGACTGCAAA # Right flank : CTATTTTTAGCTAACTGCTCAGGGCTTGTTTTATATTTAGTTATTGCAATCACTCACTTTTTATGGTATAATTAGACAAAATAGTTGAGATGTGCAACTTAATGCACGCTCCCAAAGATTACTATTAATAACTGATATATTGTTATTATTATTGTTAGGATGTCGGCTAAAACACTAACAATTGTTATAACTGTATCAGTTATTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGTGGGTGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.60,-4.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 131074-130707 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE978568.1 Peptoniphilus grossensis ph5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 131073 33 97.0 34 ................................T CTTCTTCTGATGCTTCTTTTGTGACGCCTGCCGC 131006 33 100.0 33 ................................. ACTCTGGCATCGGAATTTATCTCGTATTTCTTG 130940 33 97.0 34 ................................G TATCGTCGAAGTTCGCTTACGAAACGGCACATTT 130873 33 100.0 35 ................................. TTGTAGGCATTTCTTATAGCCTCGTCAACTGTCTT 130805 33 97.0 33 ................................G CATTATCTAGGCATGTATAATTTTTCAAACCTC 130739 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= =================================== ================== 6 33 98.0 34 GTCGCACCCCTCGTGGGTGCGTGGATTGAAATC # Left flank : TTCTCTCACAAGTTTATGCATGGTTATAGAAGAGATTACAAAACTATAGGTTATATAGACATAGAAATGGAATCTTGGTTAAGTGACTGGTATCAATCAGAACCAGTAAACTACTGGGGAAACTTCGAAGAAATGGCCATTGATTATATGGTAGAAAAAGGATACGCTTGTATAGGAGTGTATGGAGGGATAGTATTAATAGATTAATAAAATGAAAAAAGAGCTGTGAAGATGCAGCTCTTTCTTTGACATATTAGCTATGTCTTTTTATATTTTCTTTTTCAATCCACTCAGTACAACTGATATTAATTTAATAATATCACTAATTAAATAATTTTCAAGAATAATAGATCTAATTATGGATCTATTATTTTTTTGCGTAAATTTCTGATTTTGTAGTTTTTAAAAATATTGTATTAAAATCACGCCTCTCCATTGTGTACGCGGGTGCGTGGATTGAAATTCTACATCATCAGCTAGGATGCAATCAGGTTTTTCTG # Right flank : AATTGGACAATAAACAAATCAGAAAAGGAACAGGTCGCACCCCTCGTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGTGGATTGAAATGCTACGGCTCTTATTACTTTCAACTGACTGCAAAGTCGCACCCCTCGTGGGTGCGTGGATTGAAATTACTGTACCGCTGCTTGACTTGCCGCCTGGTTTAGTCGCACCCCTCGTGGGTGCGTGGATTGAA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGTGGGTGCGTGGATTGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.60,-4.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 167651-166944 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE978568.1 Peptoniphilus grossensis ph5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 167650 33 97.0 35 ................................A CGACAATTTACAAGATGCAACAGTATACAGAAAAA 167582 33 100.0 33 ................................. ATATAATTAGTAACATCAGTTGGTTTGGAATCT 167516 33 97.0 35 ................................A TAAAGGACTTGAACTAGCTTTTTTGGAACTGAAAG 167448 33 97.0 34 ................................A ATGGAAAAATCTTTGTAAAAGCCTACATCGACTA 167381 33 100.0 34 ................................. ATATCCTCACTTTTTGCATAAGATGTAAGGTCAT 167314 33 97.0 35 ................................C ACCCTAGCATCAGAATTTATCTCGTATTTTTTAGC 167246 33 100.0 33 ................................. TTAGCTCGTCTAATCTTGCAGGAAGTTCCTCAA 167180 33 97.0 34 ................................A TGCCATGGAGTATGACGGAGAAGAAAAAGCAATC 167113 33 100.0 34 ................................. CTAATTAGACCCCTAAGCTTATTATAATTGTAAA 167046 33 97.0 35 ................................C ATGTTGATGTTGTAGCACTCTTTATACCATTCCAT 166978 33 81.8 0 .................G......T...G.GGG | G,T [166950,166954] ========== ====== ====== ====== ================================= =================================== ================== 11 33 96.7 34 GTCGCACCCCTCGTGGGTGCGTGGATTGAAATT # Left flank : GTTCAAGCCATGTTATTAAATTCGTATCTTAGAGGAGATATAGAATCCTATCCACCTTTTATGATGGGAGGCTAAAATGCAAGTACTAATAACCTATGATGTAGAAACAGTGTCAAGTGATGGCAAAAGACGATTAAGGCAGGTTGCAAAAGTCTGTTTAGATTACGGACAAAGAGTTCAAAATTCTGTTTTCGAACTAAATATTTATCCTGCAGATTTAGTTCTTATTAAAAACAAATTAGAAAAAATAATTGACCCTAAAAAAGACTCAATTAGAATTTACAATTTAGGGAAAAATTGGGAGAGGAGAGTGGAAACTCTTGGAAGAGATGACTCCTATAACCCAGAAAAAGACTTATTAATCTTATAAGATTATGAGATTTAGAGCTGGACATATAATTCTTGTAACTAACTCATAATAAAACAATGAAAAAGAGACAAAACTCTTAAAAAAATGATTAGCTGTATCTTTTAGTAGTAGAAAAAGGCTAAAAAATGCA # Right flank : GCGTGCAAATATGTTAAAAAAAATTTGCACTTCCTCCCTTGAAACTACAACCTTTCTAACCAATAACTGTATAAATTCTTTTTTGTTTAATTCTAAGTTATCATTTTTAATTTTATTGATCCAAATTCTAATTTCTTTTTTTATGTTTATTGGACCTCCAGTAGATGCTAATAAATTGTTAATTTCATTTCTTTCTTTATTCAATTCATCTATCTTAGATTTTATTTTGTCATTGGCACCAAAGGACATTACATATTCAACGCAGTTATTTTCTTCTTTATCAATTTCATCAAGCCTTTTTTTAAGTGCATTTTTGTCGGTATCTAGCGACTCTAATGCTTTTTTTGTTTCTTGCTCAATTCTGTCAACTAAAACATCAGCGTTATCTAAAATGTAATTTCTTGCTACTGACATAATATATTTTTCTAAGGCTTCTTTTTTTATAGCATTATTACATTTTTTACATCGATATCGGCTATTGCTAGGGTATCTTGTATCAG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGTGGGTGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.60,-4.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //