Array 1 248892-251541 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGOJ01000003.1 Klebsiella pneumoniae strain CR5 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 248892 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 248953 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 249014 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 249075 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 249137 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 249198 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 249259 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 249320 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 249381 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 249442 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 249503 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 249564 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 249625 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 249686 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 249747 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 249808 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 249869 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 249930 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 249991 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 250052 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 250113 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 250174 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 250235 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 250296 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 250357 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 250418 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 250479 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 250540 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 250601 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 250662 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 250723 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 250784 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 250845 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 250906 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 250967 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 251028 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 251089 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 251150 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 251211 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 251272 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 251333 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 251394 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 251455 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 251513 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6834-5468 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGOJ01000001.1 Klebsiella pneumoniae strain CR5 map unlocalized plasmid unnamed1 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6833 29 100.0 32 ............................. GGGGCCAGCTCCCGGACGAGAAATGTGACGCC 6772 29 100.0 32 ............................. CGATTACGGAGTCGTTCACAAACCGACCACCG 6711 29 100.0 32 ............................. TCGGTTTCGAGCGCGGTGTATTCCTGCCAGGC 6650 28 89.7 32 .....-......TG............... CGATTACTGAGTCGTTCACGAACCGGCCACCA 6590 29 89.7 32 ........T...TG............... CAAAAATGCCAGGCACTGACTAAACCGCCGTC 6529 29 93.1 32 ............TG............... TGACTTTTGCGCAGCCTCAGGGCTCCGGTTTG 6468 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 6407 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAACT 6346 29 96.6 32 T............................ ATAACTATCAGGGTAGATTCATGAAAAGGGTA 6285 29 93.1 32 ....C.......................C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 6224 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 6163 29 100.0 32 ............................. CAGCGTCTGAACGGACGAAACATCCCTGTTGA 6102 28 89.7 32 ..........GT.-............... ATGGGCTGGCGCGACTCAAATGCCCGTTTGGC 6042 28 93.1 32 ..........-.T................ CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 5982 29 100.0 32 ............................. GCAGCGGCCTGACGATGATTGATATGAACGGC 5921 29 100.0 32 ............................. GAAAGTAGGGGCTACGCCGGAATTCCGAAGAG C [5910] 5859 29 93.1 32 ............TG............... TTACTTTTTGGCAGTTGGTAAAACACTTTTAC 5798 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 5737 29 96.6 32 .........................A... CACTACCAGATCCGAATGGACACCCGTAATGA 5676 29 96.6 32 .............C............... TGACTTTTAAAAAAAATCAGCTGAAACAGCCG 5615 28 89.7 32 ..........-.TG............... TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 5555 28 96.6 32 ..........-.................. CACTACCAGATCCGAATGGACACCCGTAATGA 5495 28 89.7 0 ..............C........-....A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 94.9 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTGCCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAATTCCAAAAGCTGGTGGATTTTAGTAGTGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCATATCTTGCAGGTTGCAATCAGAAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCACTAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGAACCAATTTATACTGTTTATATATACAGTGTTTTGGGCGGTCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCCAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCATCCA # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //