Array 1 95217-94578 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDTP010000016.1 Escherichia coli strain Y4-2 Scaffold16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95216 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 95155 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 95094 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 95033 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 94972 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 94911 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 94850 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 94789 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 94728 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 94667 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 94606 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 207956-209631 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDTP010000005.1 Escherichia coli strain Y4-2 Scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 207956 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 208017 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 208078 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 208139 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 208200 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 208261 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 208322 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 208383 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 208444 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 208505 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 208566 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 208627 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 208688 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 208749 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 208810 29 96.6 32 ...........A................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 208871 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 208932 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 208993 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 209054 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 209115 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 209176 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 209237 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 209298 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 209359 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 209420 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 209481 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 209542 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 209603 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAGATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //