Array 1 142355-142979 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTTL010000001.1 Francisella tularensis subsp. novicida strain F1125 novicida_2, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 142355 36 100.0 31 .................................... GAGAAGTCATTTAATAAGGCCACTGTTAAAA 142422 36 100.0 30 .................................... GCTACTATTCCTGTGCCTTCAGATAATTCA 142488 36 100.0 27 .................................... GTCTAGAGCCTTTTGTATTAGTAGCCG 142551 36 100.0 26 .................................... TAGCGATTTATGAAGGTCATTTTTTT 142613 36 100.0 29 .................................... AGATTAAAAGGTAATTCTATCTTGTTGAG 142678 36 100.0 29 .................................... TACCTAGTAGATACGCTTACTGATAACAA 142743 36 100.0 29 .................................... AAACTTTCATTTATGATATAAAGTTTTTT 142808 36 100.0 32 .................................... TCAAAAGGCAAGAGAGACGGAAATAAATGGAC 142876 36 100.0 29 .................................... TTGTTTGATTGCTTGCATTGAACCTTGAA 142941 35 91.7 0 ......................G.-.....T..... | A,A,TT [142970,142972,142976] ========== ====== ====== ====== ==================================== ================================ ================== 10 36 99.2 29 GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT # Left flank : GAATATGTAAGAGAATTTTATCGTGCCTTTATGCGAGGCAAAGAAATTGCAGAGTATCCAATATTTTGTTATGAAACTAGGAGGGTGTATGTTGATAGTCAGTTATGATTTTAGTAATAATAAAGTACGTGCAAAGTTTGCCAAATTTCTAGAAAGTTATGGTGTACGTTTACAATATTCGGTATTTGAGCTCAAATATAGCAAGAGAATGTTAGACTTGATTTTAGCTGAGATAGAAAATAACTATGTACCACTATTTACAAATGCTGATAGTGTTTTAATCTTTAATGCTCCAGATAAAGATGTGATAAAATATGGTTATGCGATTCATAGAGAACAAGAGGTTGTTTTTATAGACTAAAAATTGCAAACCTTAGTCTTTATGTTAAAATAACTACTAAGTTCTTAGAGATATTTAAAAATATGACTGTTGTTATATATCAAAATGCTAAAAAAATCATAGATTTTAGGTCTTTTTTTGCTGATTTAGGCAAAAACGG # Right flank : TTTCTAAATTAGAATTTTCTAATATATCACTACTTGAGAATTTATAGGCTTATAAAAATGGATTTAATGCAGATGAAAGATAATGCTAGTAAAGCTTCTTCATTATTAAAAGCAATATCCCATGAGTCGAGATTATTGATATTATGCTTGCTACTCCGAAGAGAGATGACAGTAGGAGAGCTAGCAGAGTACTCTAGTTTGAGCCAATCGGCATTTTCTCAGCATTTATCAGTGTTGAGAAATAATGGTCTGGTCAAATGTAGGAAAGAGGCGCAAAATGTATATTACAGTATCAACGATCCTTCGGTAACAAAAATATTGGAGGCTTTGTACAGCATCTATTGCGGTGATAAAAATTAAAAAATTTAAAGTTTATATTAGTAAAATCTAAATTAGATAAAGTTAAAATAAGGAGACTAAGATGAATAAAGTAGAAAAAATATCAGTAAAGCAATTTCTTGATCTACAAAAAAAAGAGAAGGTTAAGCTAATAGATATTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 138405-137152 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTTL010000004.1 Francisella tularensis subsp. novicida strain F1125 novicida_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 138404 36 73.0 34 T...T...AA..AG.C.....AA.......-...... AATTATCAAAGCAAATGAAAAAGATTAGCTGTAA A [138395] 138333 37 83.8 169 ..........T.AG...........T...TG...... TTTAAAGTAGCTAGAAAATTCACTTTTAGACCTACTTATTTTTATTATTTGAATGCTTTGGTAGTATGTTGAGATCAACATTTTGCTGTAAAACTGTTTTCGTGATTATATTATTTGATACAATGTGTCCAACTAGAAACTTTTAGGAATAATTTACAAAATTAATTAA TG [138306] 138125 37 100.0 34 ..................................... ACAATGGCAAGCTTGATTACTTTTATAGTGTGAT 138054 37 100.0 36 ..................................... AAGGATTTAATACCTTAAAATTATCCAAATTTATAT 137981 37 100.0 36 ..................................... TGCCTAATCCTCAGCAGCAACACTTAATTCAAGAAT 137908 37 100.0 34 ..................................... TTACACATTCAGCTGGTTCTTTAGCATTATTAAC 137837 37 100.0 36 ..................................... AGTAATAGCCAATGCTTTTAAACTACTGATATATAC 137764 37 100.0 36 ..................................... GCAATGACAGAAAACAGCACAGATAATAAAAAACTA 137691 37 100.0 37 ..................................... CTATAGGGTTACCTATCTTTTGAGTGTTGGCAAATAA 137617 37 100.0 34 ..................................... GTAATGGGCAGGTTTTGTATGGTCATATAGGAGT 137546 37 100.0 34 ..................................... ACTATTTAAGATAACTCGACCAATATTTGACAAA 137475 37 100.0 36 ..................................... ATCTGGTGAAGATGTAATCGAAATTGATCCGCTTAA 137402 37 100.0 34 ..................................... CAGTCTTCGCAATGACACAACCACAAGCCGCATA 137331 37 100.0 35 ..................................... AAGAGATATCTTAACTTTTGGTTTTTGGTTTTACC 137259 37 100.0 34 ..................................... GCGAGTGATTAGCAGTTGATATATACCAATCTTG 137188 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 16 37 97.3 44 GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Left flank : AACGACAATGAACACATTTGAGATTACAACGTCTAGTTGTTTCCCATGCCATCCATTTAAGTTGATGTTTCACTAAATTCTTAATCCAAAACGAAATATAATTTTGCTATAACTATTATAACAAATAATCATTAAACTAACTGTATAAAACTAATAAAAATAACTTTAAAAAAGATATTTTAAAGACCCTTTTAGCTTGGTTAGTTTGAGATTTTTATTTATACTTTATAAATACTGATAATCTCAATATTAGTTATGTTTACATTTTTGTTGTTAGCTATCGCGTTTATAGCAACCCTATATGCTTTATACTACTTTATTTTAGCTATTGTTAAGCTAATTGTAGCGATATATCATTTTAACTATTTTTTTTCTAAAAATGATTCAAAAAATTAATTAATTCATAAAATAAATTGCTTAAAGTCTATCAAAACTTTGTTTGTCTATTTCTGAAAGTAGTATTTAGATAAAATCTTATGAAAAATTATTTTTAAATGAGT # Right flank : AGCCAAAACAAACCTAGTGTTTGCAAGGCTTTGAGAGTTTTTTAAAATGGTATTTTTTCGCAAATACCCTAATTGTAAAAAAACGTAGACATTTTGCGAAAAAATATCTAAAATTATAAATGTACCAAATAATTAATGCTCTGTAATCATTTAAAAGTATTTTGAACGGACCTCTGTTTGACACGTCTGAATAACTAAAAAGCAAAAATTTGCCACCTAAGTGGCTTTTTTTGTTTGGCAATTAATATATCTTGTTCGCTTCTTAGCTCGATTACATCAAGATGGCTGAGAAATTTAATATGGAGATTTCTAAATATTTGCGAGATTTCCACCTTCAGTGGCAATTAGAGGTTTTACTATCAACGATCATTACAAAAGTTGTAATATTCACATTGTATACATTGATGATCCGATGCAGATGAGTCTGGCTTATTACCACTATCTAAAGTACTAAGAATATCGCTGATAGTTTTTATAAGTTTGTTGATTAACTCATCAGT # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.85, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: R [matched GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //